RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 GRIN2AQ12879 1464 aa30.87■■■□□ 2.53
TRIM28-202ENST00000341753 CHMP7Q8WUX9 453 aaPredicted RBP30.87■■■□□ 2.53
TRIM28-202ENST00000341753 KIAA0586Q9BVV6 1533 aa30.87■■■□□ 2.53
TRIM28-202ENST00000341753 ZNF644Q9H582 1327 aaPredicted RBP30.85■■■□□ 2.53
TRIM28-202ENST00000341753 B4GALNT3Q6L9W6 998 aa30.83■■■□□ 2.53
TRIM28-202ENST00000341753 KIAA0556O60303 1618 aa30.83■■■□□ 2.53
TRIM28-202ENST00000341753 EIF4G2P78344 907 aaKnown RBP eCLIP30.82■■■□□ 2.53
TRIM28-202ENST00000341753 PPP4R2Q9NY27 417 aa30.82■■■□□ 2.52
TRIM28-202ENST00000341753 KDM6BO15054 1643 aa30.82■■■□□ 2.52
TRIM28-202ENST00000341753 C11orf95C9JLR9 678 aaPredicted RBP30.82■■■□□ 2.52
TRIM28-202ENST00000341753 FOXD1Q16676 465 aa30.81■■■□□ 2.52
TRIM28-202ENST00000341753 TCOF1Q13428 1488 aaKnown RBP30.8■■■□□ 2.52
TRIM28-202ENST00000341753 NUP153P49790 1475 aaKnown RBP30.78■■■□□ 2.52
TRIM28-202ENST00000341753 MRS2Q9HD23 443 aa30.76■■■□□ 2.51
TRIM28-202ENST00000341753 CNTLNQ9NXG0 1405 aa30.75■■■□□ 2.51
TRIM28-202ENST00000341753 DENND4BO75064 1496 aaPredicted RBP30.73■■■□□ 2.51
TRIM28-202ENST00000341753 L3MBTL2Q969R5 705 aa30.73■■■□□ 2.51
TRIM28-202ENST00000341753 PRKRIP1Q9H875 184 aaPredicted RBP30.73■■■□□ 2.51
TRIM28-202ENST00000341753 CNGB1Q14028 1251 aaPredicted RBP30.7■■■□□ 2.51
TRIM28-202ENST00000341753 CEP170Q5SW79 1584 aa30.7■■■□□ 2.51
TRIM28-202ENST00000341753 PLB1Q6P1J6 1458 aa30.7■■■□□ 2.51
TRIM28-202ENST00000341753 PRG4Q92954 1404 aaPredicted RBP30.69■■■□□ 2.5
TRIM28-202ENST00000341753 MIA2Q96PC5 1412 aa30.69■■■□□ 2.5
TRIM28-202ENST00000341753 RAPGEF6Q8TEU7 1601 aa30.67■■■□□ 2.5
TRIM28-202ENST00000341753 ERICH6BQ5W0A0 696 aa30.67■■■□□ 2.5
TRIM28-202ENST00000341753 MPHOSPH9Q99550 1183 aa30.66■■■□□ 2.5
TRIM28-202ENST00000341753 CCDC7Q96M83 1385 aa30.65■■■□□ 2.5
TRIM28-202ENST00000341753 ZNF777Q9ULD5 760 aaPredicted RBP30.64■■■□□ 2.5
TRIM28-202ENST00000341753 JPH4Q96JJ6 628 aa30.64■■■□□ 2.5
TRIM28-202ENST00000341753 SYNJ2O15056 1496 aa30.63■■■□□ 2.49
TRIM28-202ENST00000341753 MAGI1Q96QZ7 1491 aaPredicted RBP30.63■■■□□ 2.49
TRIM28-202ENST00000341753 GCC2Q8IWJ2 1684 aa30.63■■■□□ 2.49
TRIM28-202ENST00000341753 DAPK1P53355 1430 aa30.62■■■□□ 2.49
TRIM28-202ENST00000341753 ABCC5O15440 1437 aa30.6■■■□□ 2.49
TRIM28-202ENST00000341753 ZBED9Q6R2W3 1325 aa30.6■■■□□ 2.49
TRIM28-202ENST00000341753 NBPF8Q3BBV2 869 aa30.6■■■□□ 2.49
TRIM28-202ENST00000341753 SENP3-EIF4A1A0A087X0R7 540 aa30.59■■■□□ 2.49
TRIM28-202ENST00000341753 NCOA1Q15788 1441 aa30.59■■■□□ 2.49
TRIM28-202ENST00000341753 CFDP1Q9UEE9 299 aaPredicted RBP30.55■■■□□ 2.48
TRIM28-202ENST00000341753 AKNAQ7Z591 1439 aa30.53■■■□□ 2.48
TRIM28-202ENST00000341753 KIF7Q2M1P5 1343 aa30.52■■■□□ 2.48
TRIM28-202ENST00000341753 TROQ12816 1431 aaPredicted RBP30.5■■■□□ 2.47
TRIM28-202ENST00000341753 KIF14Q15058 1648 aa30.49■■■□□ 2.47
TRIM28-202ENST00000341753 DEKP35659 375 aaKnown RBP30.48■■■□□ 2.47
TRIM28-202ENST00000341753 NBR1Q14596 966 aa30.48■■■□□ 2.47
TRIM28-202ENST00000341753 POLR3GLQ9BT43 218 aa30.48■■■□□ 2.47
TRIM28-202ENST00000341753 NUP160Q12769 1436 aa30.46■■■□□ 2.47
TRIM28-202ENST00000341753 SLC4A1APQ9BWU0 796 aaKnown RBP30.46■■■□□ 2.47
TRIM28-202ENST00000341753 DNMT1P26358 1616 aaKnown RBP30.46■■■□□ 2.47
TRIM28-202ENST00000341753 PAK3O75914 559 aaPredicted RBP30.46■■■□□ 2.47
TRIM28-202ENST00000341753 CARMIL2Q6F5E8 1435 aa30.46■■■□□ 2.47
TRIM28-202ENST00000341753 CAMSAP2Q08AD1 1489 aa30.43■■■□□ 2.46
TRIM28-202ENST00000341753 NOP58Q9Y2X3 529 aaKnown RBP30.43■■■□□ 2.46
TRIM28-202ENST00000341753 GPATCH8Q9UKJ3 1502 aaKnown RBP30.42■■■□□ 2.46
TRIM28-202ENST00000341753 ROCK1Q13464 1354 aa30.42■■■□□ 2.46
TRIM28-202ENST00000341753 ANKRD30BQ9BXX2 1392 aa30.39■■■□□ 2.46
TRIM28-202ENST00000341753 PLEKHD1A6NEE1 506 aa30.35■■■□□ 2.45
TRIM28-202ENST00000341753 RPRD2Q5VT52 1461 aaKnown RBP30.35■■■□□ 2.45
TRIM28-202ENST00000341753 ZNF326Q5BKZ1 582 aaKnown RBP30.35■■■□□ 2.45
TRIM28-202ENST00000341753 TEX14Q8IWB6 1497 aa30.34■■■□□ 2.45
TRIM28-202ENST00000341753 SPATA31E1Q6ZUB1 1445 aa30.33■■■□□ 2.45
TRIM28-202ENST00000341753 CCDC136Q96JN2 1154 aa30.33■■■□□ 2.45
TRIM28-202ENST00000341753 ATP10BO94823 1461 aa30.3■■■□□ 2.44
TRIM28-202ENST00000341753 SMG6Q86US8 1419 aaKnown RBP30.29■■■□□ 2.44
TRIM28-202ENST00000341753 MYT1LQ9UL68 1186 aa30.29■■■□□ 2.44
TRIM28-202ENST00000341753 NUDCQ9Y266 331 aa30.29■■■□□ 2.44
TRIM28-202ENST00000341753 PZPP20742 1482 aa30.25■■■□□ 2.43
TRIM28-202ENST00000341753 DHX29Q7Z478 1369 aaKnown RBP30.24■■■□□ 2.43
TRIM28-202ENST00000341753 ABCA8O94911 1581 aa30.24■■■□□ 2.43
TRIM28-202ENST00000341753 ITSN2Q9NZM3 1697 aa30.24■■■□□ 2.43
TRIM28-202ENST00000341753 HNRNPMP52272 730 aaKnown RBP eCLIP30.22■■■□□ 2.433e-7■■■□□ 14.9
TRIM28-202ENST00000341753 PKD2Q13563 968 aa30.21■■■□□ 2.43
TRIM28-202ENST00000341753 ADCY10Q96PN6 1610 aa30.21■■■□□ 2.43
TRIM28-202ENST00000341753 ANP32AP39687 249 aaKnown RBP30.19■■■□□ 2.42
TRIM28-202ENST00000341753 PTPRGP23470 1445 aa30.19■■■□□ 2.42
TRIM28-202ENST00000341753 ANKRD30AQ9BXX3 1397 aa30.17■■■□□ 2.42
TRIM28-202ENST00000341753 ABCC10Q5T3U5 1492 aa30.16■■■□□ 2.42
TRIM28-202ENST00000341753 CDC42BPAQ5VT25 1732 aa30.16■■■□□ 2.42
TRIM28-202ENST00000341753 USP47Q96K76 1375 aa30.16■■■□□ 2.42
TRIM28-202ENST00000341753 RNF123Q5XPI4 1314 aa30.15■■■□□ 2.42
TRIM28-202ENST00000341753 IPO9Q96P70 1041 aaKnown RBP30.15■■■□□ 2.42
TRIM28-202ENST00000341753 ANKRD50Q9ULJ7 1429 aa30.14■■■□□ 2.42
TRIM28-202ENST00000341753 ADGBQ8N7X0 1667 aa30.12■■■□□ 2.41
TRIM28-202ENST00000341753 TMC1Q8TDI8 760 aa30.12■■■□□ 2.41
TRIM28-202ENST00000341753 POLR1AO95602 1720 aaPredicted RBP30.12■■■□□ 2.41
TRIM28-202ENST00000341753 BCORL1Q5H9F3 1711 aa30.11■■■□□ 2.41
TRIM28-202ENST00000341753 ADGRL2O95490 1459 aa30.1■■■□□ 2.41
TRIM28-202ENST00000341753 CROCC2H7BZ55 1655 aa30.1■■■□□ 2.41
TRIM28-202ENST00000341753 C9orf84Q5VXU9 1444 aa30.1■■■□□ 2.41
TRIM28-202ENST00000341753 PNISRQ8TF01 805 aaKnown RBP30.1■■■□□ 2.41
TRIM28-202ENST00000341753 ZBTB47Q9UFB7 747 aaPredicted RBP30.1■■■□□ 2.41
TRIM28-202ENST00000341753 NUP155O75694 1391 aa30.08■■■□□ 2.41
TRIM28-202ENST00000341753 TSPY4P0CV99 314 aa30.08■■■□□ 2.41
TRIM28-202ENST00000341753 TSPY10P0CW01 314 aa30.08■■■□□ 2.41
TRIM28-202ENST00000341753 KIAA1107Q9UPP5 1409 aa30.08■■■□□ 2.41
TRIM28-202ENST00000341753 NPM2Q86SE8 214 aaKnown RBP30.07■■■□□ 2.4
TRIM28-202ENST00000341753 SALL2Q9Y467 1007 aaPredicted RBP30.06■■■□□ 2.4
TRIM28-202ENST00000341753 CHD1O14646 1710 aa30.04■■■□□ 2.4
TRIM28-202ENST00000341753 RTL5Q5HYW3 569 aaPredicted RBP30.02■■■□□ 2.4
TRIM28-202ENST00000341753 ERCC6L2Q5T890 1561 aa30.01■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms