RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CDK11AQ9UQ88 783 aaPredicted RBP14.71□□□□□ -0.05
LIMA1-201ENST00000341247 GCC2Q8IWJ2 1684 aa14.71□□□□□ -0.06
LIMA1-201ENST00000341247 MIA2Q96PC5 1412 aa14.7□□□□□ -0.06
LIMA1-201ENST00000341247 TIMELESSQ9UNS1 1208 aa14.7□□□□□ -0.06
LIMA1-201ENST00000341247 DAPK1P53355 1430 aa14.69□□□□□ -0.06
LIMA1-201ENST00000341247 ABCA8O94911 1581 aa14.69□□□□□ -0.06
LIMA1-201ENST00000341247 ATP10BO94823 1461 aa14.68□□□□□ -0.06
LIMA1-201ENST00000341247 GPATCH8Q9UKJ3 1502 aaKnown RBP14.68□□□□□ -0.06
LIMA1-201ENST00000341247 MPHOSPH9Q99550 1183 aa14.68□□□□□ -0.06
LIMA1-201ENST00000341247 TROQ12816 1431 aaPredicted RBP14.68□□□□□ -0.06
LIMA1-201ENST00000341247 CFDP1Q9UEE9 299 aaPredicted RBP14.67□□□□□ -0.06
LIMA1-201ENST00000341247 DNMT1P26358 1616 aaKnown RBP14.66□□□□□ -0.06
LIMA1-201ENST00000341247 CAMSAP2Q08AD1 1489 aa14.65□□□□□ -0.06
LIMA1-201ENST00000341247 CARMIL2Q6F5E8 1435 aa14.64□□□□□ -0.07
LIMA1-201ENST00000341247 SLC4A1APQ9BWU0 796 aaKnown RBP14.63□□□□□ -0.07
LIMA1-201ENST00000341247 CDC42BPAQ5VT25 1732 aa14.62□□□□□ -0.07
LIMA1-201ENST00000341247 ADCY10Q96PN6 1610 aa14.62□□□□□ -0.07
LIMA1-201ENST00000341247 ABCC10Q5T3U5 1492 aa14.61□□□□□ -0.07
LIMA1-201ENST00000341247 L3MBTL2Q969R5 705 aa14.61□□□□□ -0.07
LIMA1-201ENST00000341247 ANP32CO43423 234 aa14.6□□□□□ -0.07
LIMA1-201ENST00000341247 AKNAQ7Z591 1439 aa14.6□□□□□ -0.07
LIMA1-201ENST00000341247 PLEKHD1A6NEE1 506 aa14.59□□□□□ -0.07
LIMA1-201ENST00000341247 HSPA5P11021 654 aaKnown RBP14.58□□□□□ -0.08
LIMA1-201ENST00000341247 PTPRGP23470 1445 aa14.58□□□□□ -0.08
LIMA1-201ENST00000341247 NCOA1Q15788 1441 aa14.57□□□□□ -0.08
LIMA1-201ENST00000341247 ZNF326Q5BKZ1 582 aaKnown RBP14.56□□□□□ -0.08
LIMA1-201ENST00000341247 SHROOM2Q13796 1616 aa14.56□□□□□ -0.08
LIMA1-201ENST00000341247 ROCK1Q13464 1354 aa14.56□□□□□ -0.08
LIMA1-201ENST00000341247 CROCC2H7BZ55 1655 aa14.55□□□□□ -0.08
LIMA1-201ENST00000341247 PZPP20742 1482 aa14.54□□□□□ -0.08
LIMA1-201ENST00000341247 ITSN2Q9NZM3 1697 aa14.54□□□□□ -0.08
LIMA1-201ENST00000341247 HNRNPMP52272 730 aaKnown RBP eCLIP14.53□□□□□ -0.08
LIMA1-201ENST00000341247 CNGB1Q14028 1251 aaPredicted RBP14.53□□□□□ -0.08
LIMA1-201ENST00000341247 ANKRD30BQ9BXX2 1392 aa14.52□□□□□ -0.08
LIMA1-201ENST00000341247 CDC42BPBQ9Y5S2 1711 aa14.52□□□□□ -0.08
LIMA1-201ENST00000341247 EIF4G2P78344 907 aaKnown RBP eCLIP14.52□□□□□ -0.09
LIMA1-201ENST00000341247 NBPF8Q3BBV2 869 aa14.51□□□□□ -0.09
LIMA1-201ENST00000341247 SUPT16HQ9Y5B9 1047 aaKnown RBP14.51□□□□□ -0.09
LIMA1-201ENST00000341247 BCANQ96GW7 911 aa14.51□□□□□ -0.09
LIMA1-201ENST00000341247 TTC37Q6PGP7 1564 aa14.51□□□□□ -0.09
LIMA1-201ENST00000341247 PELP1Q8IZL8 1130 aaKnown RBP14.5□□□□□ -0.09
LIMA1-201ENST00000341247 POLR3GLQ9BT43 218 aa14.5□□□□□ -0.09
LIMA1-201ENST00000341247 WASHC2AQ641Q2 1341 aa14.5□□□□□ -0.09
LIMA1-201ENST00000341247 SAMD9LQ8IVG5 1584 aa14.49□□□□□ -0.09
LIMA1-201ENST00000341247 PKD2Q13563 968 aa14.49□□□□□ -0.09
LIMA1-201ENST00000341247 MBD5Q9P267 1494 aa14.49□□□□□ -0.09
LIMA1-201ENST00000341247 ADGBQ8N7X0 1667 aa14.48□□□□□ -0.09
LIMA1-201ENST00000341247 C11orf95C9JLR9 678 aaPredicted RBP14.48□□□□□ -0.09
LIMA1-201ENST00000341247 ADGRL2O95490 1459 aa14.47□□□□□ -0.09
LIMA1-201ENST00000341247 TEX14Q8IWB6 1497 aa14.47□□□□□ -0.09
LIMA1-201ENST00000341247 CLASP1Q7Z460 1538 aa14.47□□□□□ -0.09
LIMA1-201ENST00000341247 TSPY4P0CV99 314 aa14.46□□□□□ -0.09
LIMA1-201ENST00000341247 TSPY10P0CW01 314 aa14.46□□□□□ -0.09
LIMA1-201ENST00000341247 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIMA1-201ENST00000341247 RPRD2Q5VT52 1461 aaKnown RBP14.45□□□□□ -0.1
LIMA1-201ENST00000341247 C9orf84Q5VXU9 1444 aa14.45□□□□□ -0.1
LIMA1-201ENST00000341247 ANKRD30AQ9BXX3 1397 aa14.44□□□□□ -0.1
LIMA1-201ENST00000341247 CCER2I3L3R5 266 aa14.43□□□□□ -0.1
LIMA1-201ENST00000341247 ANKRD50Q9ULJ7 1429 aa14.43□□□□□ -0.1
LIMA1-201ENST00000341247 PREX2Q70Z35 1606 aa14.43□□□□□ -0.1
LIMA1-201ENST00000341247 NUP155O75694 1391 aa14.43□□□□□ -0.1
LIMA1-201ENST00000341247 ABCC2Q92887 1545 aa14.42□□□□□ -0.1
LIMA1-201ENST00000341247 ARHGEF12Q9NZN5 1544 aa14.42□□□□□ -0.1
LIMA1-201ENST00000341247 KDM2AQ9Y2K7 1162 aa14.42□□□□□ -0.1
LIMA1-201ENST00000341247 SYCP2Q9BX26 1530 aa14.41□□□□□ -0.1
LIMA1-201ENST00000341247 FKBP8Q14318 412 aa14.41□□□□□ -0.1
LIMA1-201ENST00000341247 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.4□□□□□ -0.18e-10■■■□□ 17.1
LIMA1-201ENST00000341247 ZCCHC11Q5TAX3 1644 aaKnown RBP14.39□□□□□ -0.11
LIMA1-201ENST00000341247 HNRNPUQ00839 825 aaKnown RBP eCLIP14.39□□□□□ -0.11
LIMA1-201ENST00000341247 CCDC184Q52MB2 194 aa14.39□□□□□ -0.11
LIMA1-201ENST00000341247 KIF15Q9NS87 1388 aa14.38□□□□□ -0.11
LIMA1-201ENST00000341247 SHANK2Q9UPX8 1470 aa14.37□□□□□ -0.11
LIMA1-201ENST00000341247 KIAA1107Q9UPP5 1409 aa14.36□□□□□ -0.11
LIMA1-201ENST00000341247 ARHGAP5Q13017 1502 aa14.36□□□□□ -0.11
LIMA1-201ENST00000341247 ARHGEF5Q12774 1597 aa14.36□□□□□ -0.11
LIMA1-201ENST00000341247 FAM9BQ8IZU0 186 aa14.35□□□□□ -0.11
LIMA1-201ENST00000341247 CCDC7Q96M83 1385 aa14.35□□□□□ -0.11
LIMA1-201ENST00000341247 KIF7Q2M1P5 1343 aa14.34□□□□□ -0.11
LIMA1-201ENST00000341247 CCDC141Q6ZP82 1450 aa14.34□□□□□ -0.11
LIMA1-201ENST00000341247 SPATA31E1Q6ZUB1 1445 aa14.34□□□□□ -0.11
LIMA1-201ENST00000341247 RGL3Q3MIN7 710 aa14.33□□□□□ -0.12
LIMA1-201ENST00000341247 SENP3-EIF4A1A0A087X0R7 540 aa14.33□□□□□ -0.12
LIMA1-201ENST00000341247 DCAF11Q8TEB1 546 aa14.32□□□□□ -0.12
LIMA1-201ENST00000341247 MYO5CQ9NQX4 1742 aa14.32□□□□□ -0.12
LIMA1-201ENST00000341247 NEFLP07196 543 aa14.31□□□□□ -0.12
LIMA1-201ENST00000341247 CNTLNQ9NXG0 1405 aa14.31□□□□□ -0.12
LIMA1-201ENST00000341247 MRS2Q9HD23 443 aa14.31□□□□□ -0.12
LIMA1-201ENST00000341247 IRX6P78412 446 aaPredicted RBP14.3□□□□□ -0.12
LIMA1-201ENST00000341247 TRAPPC8Q9Y2L5 1435 aa14.3□□□□□ -0.12
LIMA1-201ENST00000341247 PRKRIP1Q9H875 184 aaPredicted RBP14.3□□□□□ -0.12
LIMA1-201ENST00000341247 PLEKHH2Q8IVE3 1493 aa14.3□□□□□ -0.12
LIMA1-201ENST00000341247 BCORL1Q5H9F3 1711 aa14.29□□□□□ -0.12
LIMA1-201ENST00000341247 CARD11Q9BXL7 1154 aa14.29□□□□□ -0.12
LIMA1-201ENST00000341247 KDM5DQ9BY66 1539 aa14.29□□□□□ -0.12
LIMA1-201ENST00000341247 USP47Q96K76 1375 aa14.29□□□□□ -0.12
LIMA1-201ENST00000341247 FAM135AQ9P2D6 1515 aa14.29□□□□□ -0.12
LIMA1-201ENST00000341247 PLA2R1Q13018 1463 aa14.28□□□□□ -0.12
LIMA1-201ENST00000341247 UHRF1BP1LA0JNW5 1464 aa14.27□□□□□ -0.13
LIMA1-201ENST00000341247 PLCH2O75038 1416 aa14.27□□□□□ -0.13
LIMA1-201ENST00000341247 AFAP1Q8N556 730 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms