RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 FRAT2O75474 233 aaPredicted RBP11.13□□□□□ -0.63
TDP1-201ENST00000335725 FOXD1Q16676 465 aa11.13□□□□□ -0.63
TDP1-201ENST00000335725 ZCCHC6Q5VYS8 1495 aaKnown RBP11.13□□□□□ -0.63
TDP1-201ENST00000335725 GOLGA6L3A6NEY3 463 aa11.13□□□□□ -0.63
TDP1-201ENST00000335725 PTMAP06454 111 aaKnown RBP11.13□□□□□ -0.63
TDP1-201ENST00000335725 KIAA1211Q6ZU35 1233 aa11.12□□□□□ -0.63
TDP1-201ENST00000335725 AXDND1Q5T1B0 1012 aaPredicted RBP11.11□□□□□ -0.63
TDP1-201ENST00000335725 WWC1Q8IX03 1113 aa11.1□□□□□ -0.63
TDP1-201ENST00000335725 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.09□□□□□ -0.63
TDP1-201ENST00000335725 ZNF622Q969S3 477 aaKnown RBP eCLIP11.09□□□□□ -0.63
TDP1-201ENST00000335725 FAM13BQ9NYF5 915 aa11.09□□□□□ -0.63
TDP1-201ENST00000335725 APPP05067 770 aa11.08□□□□□ -0.64
TDP1-201ENST00000335725 MMP14P50281 582 aa11.08□□□□□ -0.64
TDP1-201ENST00000335725 POLR3GLQ9BT43 218 aa11.08□□□□□ -0.64
TDP1-201ENST00000335725 MYH16Q9H6N6 1097 aa11.07□□□□□ -0.64
TDP1-201ENST00000335725 XRCC6P12956 609 aaKnown RBP eCLIP11.07□□□□□ -0.64
TDP1-201ENST00000335725 HDAC5Q9UQL6 1122 aa11.07□□□□□ -0.64
TDP1-201ENST00000335725 ZBED9Q6R2W3 1325 aa11.06□□□□□ -0.64
TDP1-201ENST00000335725 ZSCAN20P17040 1043 aaPredicted RBP11.06□□□□□ -0.64
TDP1-201ENST00000335725 MRE11P49959 708 aa11.06□□□□□ -0.64
TDP1-201ENST00000335725 FAM193AP78312 1265 aa11.06□□□□□ -0.64
TDP1-201ENST00000335725 SLC20A2Q08357 652 aa11.06□□□□□ -0.64
TDP1-201ENST00000335725 DNAJC2Q99543 621 aaKnown RBP11.06□□□□□ -0.64
TDP1-201ENST00000335725 ISY1Q9ULR0 285 aaKnown RBP11.06□□□□□ -0.64
TDP1-201ENST00000335725 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.05□□□□□ -0.64
TDP1-201ENST00000335725 PRDM10Q9NQV6 1147 aa11.05□□□□□ -0.64
TDP1-201ENST00000335725 POGKQ9P215 609 aa11.05□□□□□ -0.64
TDP1-201ENST00000335725 BAZ1BQ9UIG0 1483 aaKnown RBP11.05□□□□□ -0.64
TDP1-201ENST00000335725 CCDC94Q9BW85 323 aaPredicted RBP11.05□□□□□ -0.64
TDP1-201ENST00000335725 OFD1O75665 1012 aa11.03□□□□□ -0.64
TDP1-201ENST00000335725 RIPK4P57078 832 aa11.03□□□□□ -0.64
TDP1-201ENST00000335725 FSD2A1L4K1 749 aa11.03□□□□□ -0.64
TDP1-201ENST00000335725 TNIKQ9UKE5 1360 aa11.03□□□□□ -0.64
TDP1-201ENST00000335725 DYNC1I1O14576 645 aa11.02□□□□□ -0.65
TDP1-201ENST00000335725 ARID3AQ99856 593 aa11.02□□□□□ -0.65
TDP1-201ENST00000335725 TAOK2Q9UL54 1235 aa11.02□□□□□ -0.65
TDP1-201ENST00000335725 CCDC9Q9Y3X0 531 aaKnown RBP11.01□□□□□ -0.65
TDP1-201ENST00000335725 KCNG1Q9UIX4 513 aa11.01□□□□□ -0.65
TDP1-201ENST00000335725 PATL2C9JE40 543 aaKnown RBP11□□□□□ -0.65
TDP1-201ENST00000335725 SIN3AQ96ST3 1273 aa11□□□□□ -0.65
TDP1-201ENST00000335725 RNF123Q5XPI4 1314 aa11□□□□□ -0.65
TDP1-201ENST00000335725 GRIPAP1Q4V328 841 aa10.99□□□□□ -0.65
TDP1-201ENST00000335725 TICAM2Q86XR7 235 aa10.99□□□□□ -0.65
TDP1-201ENST00000335725 PEG3Q9GZU2 1588 aa10.99□□□□□ -0.65
TDP1-201ENST00000335725 SMG6Q86US8 1419 aaKnown RBP10.98□□□□□ -0.65
TDP1-201ENST00000335725 SLC4A3P48751 1232 aa10.97□□□□□ -0.65
TDP1-201ENST00000335725 YY1AP1Q9H869 796 aa10.97□□□□□ -0.65
TDP1-201ENST00000335725 HMGB1P09429 215 aaKnown RBP10.97□□□□□ -0.65
TDP1-201ENST00000335725 MCCP23508 829 aa10.97□□□□□ -0.65
TDP1-201ENST00000335725 CC2D1BQ5T0F9 858 aaKnown RBP10.96□□□□□ -0.65
TDP1-201ENST00000335725 MSNP26038 577 aaKnown RBP10.96□□□□□ -0.65
TDP1-201ENST00000335725 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.96□□□□□ -0.65
TDP1-201ENST00000335725 E9PSI1 815 aa10.96□□□□□ -0.66
TDP1-201ENST00000335725 PHF14O94880 888 aa10.96□□□□□ -0.66
TDP1-201ENST00000335725 TSPYL1Q9H0U9 437 aa10.95□□□□□ -0.66
TDP1-201ENST00000335725 PANK2Q9BZ23 570 aa10.95□□□□□ -0.66
TDP1-201ENST00000335725 CGNQ9P2M7 1197 aaKnown RBP10.95□□□□□ -0.66
TDP1-201ENST00000335725 MAPK8IP2Q13387 824 aaPredicted RBP10.95□□□□□ -0.66
TDP1-201ENST00000335725 RALBP1Q15311 655 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 ERBB4Q15303 1308 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 UQCRHLA0A096LP55 91 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 UQCRHP07919 91 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 PSEN1P49768 467 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 BECN1Q14457 450 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 GEMIN8Q9NWZ8 242 aaKnown RBP10.94□□□□□ -0.66
TDP1-201ENST00000335725 ZSCAN30Q86W11 494 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 NUDCQ9Y266 331 aa10.94□□□□□ -0.66
TDP1-201ENST00000335725 CLSTN1O94985 981 aa10.93□□□□□ -0.66
TDP1-201ENST00000335725 PLCD4Q9BRC7 762 aa10.93□□□□□ -0.66
TDP1-201ENST00000335725 GRPEL1Q9HAV7 217 aa10.93□□□□□ -0.66
TDP1-201ENST00000335725 R3HCC1Q9Y3T6 440 aaKnown RBP10.92□□□□□ -0.66
TDP1-201ENST00000335725 CSPP1Q1MSJ5 1256 aa10.92□□□□□ -0.66
TDP1-201ENST00000335725 PHLDB1Q86UU1 1377 aa10.92□□□□□ -0.66
TDP1-201ENST00000335725 CCDC66A2RUB6 948 aa10.91□□□□□ -0.66
TDP1-201ENST00000335725 IRX5P78411 483 aaPredicted RBP10.91□□□□□ -0.66
TDP1-201ENST00000335725 MYCNP04198 464 aaPredicted RBP10.91□□□□□ -0.66
TDP1-201ENST00000335725 SLC52A1Q9NWF4 448 aa10.9□□□□□ -0.66
TDP1-201ENST00000335725 CEP120Q8N960 986 aa10.89□□□□□ -0.67
TDP1-201ENST00000335725 AEBP1Q8IUX7 1158 aa10.89□□□□□ -0.67
TDP1-201ENST00000335725 SMARCA2P51531 1590 aa10.89□□□□□ -0.67
TDP1-201ENST00000335725 CCDC173Q0VFZ6 552 aa10.88□□□□□ -0.67
TDP1-201ENST00000335725 AKNAQ7Z591 1439 aa10.88□□□□□ -0.67
TDP1-201ENST00000335725 TMC1Q8TDI8 760 aa10.88□□□□□ -0.67
TDP1-201ENST00000335725 KCNJ4P48050 445 aa10.87□□□□□ -0.67
TDP1-201ENST00000335725 ZNF771Q7L3S4 317 aaPredicted RBP10.86□□□□□ -0.67
TDP1-201ENST00000335725 WDR97A6NE52 1622 aa10.86□□□□□ -0.67
TDP1-201ENST00000335725 SASS6Q6UVJ0 657 aa10.86□□□□□ -0.67
TDP1-201ENST00000335725 NBPF1Q3BBV0 1214 aa10.86□□□□□ -0.67
TDP1-201ENST00000335725 ZBTB22O15209 634 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 CUX2O14529 1486 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 FAM161AQ3B820 660 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 HS1BP3Q53T59 392 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 FAM9BQ8IZU0 186 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 SOX12O15370 315 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 TIGD1Q96MW7 591 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 EFCC1Q9HA90 598 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 KIF3AQ9Y496 699 aa10.85□□□□□ -0.67
TDP1-201ENST00000335725 CBX1P83916 185 aa10.84□□□□□ -0.67
TDP1-201ENST00000335725 TPRNQ4KMQ1 711 aa10.84□□□□□ -0.67
TDP1-201ENST00000335725 CERS3Q8IU89 383 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms