RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 PELP1Q8IZL8 1130 aaKnown RBP15.71■□□□□ 0.11
TDP1-201ENST00000335725 MYT1Q01538 1121 aa15.54■□□□□ 0.08
TDP1-201ENST00000335725 TTBK1Q5TCY1 1321 aaPredicted RBP14.91□□□□□ -0.02
TDP1-201ENST00000335725 HRCP23327 699 aa14.46□□□□□ -0.09
TDP1-201ENST00000335725 ERICH6Q7L0X2 663 aa14.18□□□□□ -0.14
TDP1-201ENST00000335725 PRKCSHP14314 528 aaPredicted RBP14.14□□□□□ -0.15
TDP1-201ENST00000335725 SCAF1Q9H7N4 1312 aaKnown RBP14.07□□□□□ -0.16
TDP1-201ENST00000335725 BCL11AQ9H165 835 aa13.94□□□□□ -0.18
TDP1-201ENST00000335725 APLP2Q06481 763 aa13.92□□□□□ -0.18
TDP1-201ENST00000335725 PPARGC1BQ86YN6 1023 aaKnown RBP13.83□□□□□ -0.2
TDP1-201ENST00000335725 CENPBP07199 599 aaPredicted RBP13.78□□□□□ -0.2
TDP1-201ENST00000335725 SLC24A1O60721 1099 aa13.77□□□□□ -0.21
TDP1-201ENST00000335725 FAM9AQ8IZU1 332 aaPredicted RBP13.69□□□□□ -0.22
TDP1-201ENST00000335725 ACIN1Q9UKV3 1341 aaKnown RBP13.58□□□□□ -0.24
TDP1-201ENST00000335725 PCGF6Q9BYE7 350 aa13.57□□□□□ -0.24
TDP1-201ENST00000335725 ZEB1P37275 1124 aaPredicted RBP13.51□□□□□ -0.25
TDP1-201ENST00000335725 GTF3C3Q9Y5Q9 886 aa13.44□□□□□ -0.26
TDP1-201ENST00000335725 ANP32EQ9BTT0 268 aa13.39□□□□□ -0.27
TDP1-201ENST00000335725 NEUROD1Q13562 356 aa13.36□□□□□ -0.27
TDP1-201ENST00000335725 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
TDP1-201ENST00000335725 EIF5BO60841 1220 aaKnown RBP13.17□□□□□ -0.3
TDP1-201ENST00000335725 CSRNP3Q8WYN3 585 aa13.13□□□□□ -0.31
TDP1-201ENST00000335725 TRIM26Q12899 539 aaPredicted RBP13.07□□□□□ -0.32
TDP1-201ENST00000335725 DCAF1Q9Y4B6 1507 aa13.07□□□□□ -0.32
TDP1-201ENST00000335725 CCDC180Q9P1Z9 1646 aa13.04□□□□□ -0.32
TDP1-201ENST00000335725 UBE2Q2Q8WVN8 375 aa13□□□□□ -0.33
TDP1-201ENST00000335725 MYO15BQ96JP2 1530 aa13□□□□□ -0.33
TDP1-201ENST00000335725 CLSPNQ9HAW4 1339 aa12.9□□□□□ -0.34
TDP1-201ENST00000335725 NISCHQ9Y2I1 1504 aa12.89□□□□□ -0.35
TDP1-201ENST00000335725 ANO8Q9HCE9 1232 aaPredicted RBP12.87□□□□□ -0.35
TDP1-201ENST00000335725 MYT1LQ9UL68 1186 aa12.85□□□□□ -0.35
TDP1-201ENST00000335725 DIEXFQ68CQ4 756 aaKnown RBP12.83□□□□□ -0.36
TDP1-201ENST00000335725 ERICH6BQ5W0A0 696 aa12.79□□□□□ -0.36
TDP1-201ENST00000335725 TSHZ2Q9NRE2 1034 aa12.78□□□□□ -0.36
TDP1-201ENST00000335725 PKNOX2Q96KN3 472 aa12.7□□□□□ -0.38
TDP1-201ENST00000335725 PODXL2Q9NZ53 605 aa12.69□□□□□ -0.38
TDP1-201ENST00000335725 PLEKHG5O94827 1062 aa12.65□□□□□ -0.38
TDP1-201ENST00000335725 CHIC1Q5VXU3 224 aa12.62□□□□□ -0.39
TDP1-201ENST00000335725 SALL2Q9Y467 1007 aaPredicted RBP12.61□□□□□ -0.39
TDP1-201ENST00000335725 SUPT16HQ9Y5B9 1047 aaKnown RBP12.59□□□□□ -0.39
TDP1-201ENST00000335725 YTHDC1Q96MU7 727 aaKnown RBP12.59□□□□□ -0.39
TDP1-201ENST00000335725 DEKP35659 375 aaKnown RBP12.5□□□□□ -0.41
TDP1-201ENST00000335725 CCDC136Q96JN2 1154 aa12.5□□□□□ -0.41
TDP1-201ENST00000335725 TRIM41Q8WV44 630 aa12.49□□□□□ -0.41
TDP1-201ENST00000335725 NEFLP07196 543 aa12.47□□□□□ -0.41
TDP1-201ENST00000335725 SUPT5HO00267 1087 aaKnown RBP12.43□□□□□ -0.42
TDP1-201ENST00000335725 RBM19Q9Y4C8 960 aaKnown RBP12.42□□□□□ -0.42
TDP1-201ENST00000335725 GLIPR1L2Q4G1C9 344 aa12.41□□□□□ -0.42
TDP1-201ENST00000335725 ZNF316A6NFI3 1004 aaPredicted RBP12.39□□□□□ -0.43
TDP1-201ENST00000335725 CCER1Q8TC90 406 aaPredicted RBP12.39□□□□□ -0.43
TDP1-201ENST00000335725 FANCIQ9NVI1 1328 aa12.34□□□□□ -0.43
TDP1-201ENST00000335725 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.33□□□□□ -0.44
TDP1-201ENST00000335725 RANGAP1P46060 587 aaPredicted RBP12.3□□□□□ -0.44
TDP1-201ENST00000335725 MIER1Q8N108 512 aa12.3□□□□□ -0.44
TDP1-201ENST00000335725 LOC105371045A0A1W2PR82 267 aa12.29□□□□□ -0.44
TDP1-201ENST00000335725 MSH5O43196 834 aa12.29□□□□□ -0.44
TDP1-201ENST00000335725 PDE4CQ08493 712 aa12.22□□□□□ -0.45
TDP1-201ENST00000335725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.21□□□□□ -0.45
TDP1-201ENST00000335725 PDIA4P13667 645 aaKnown RBP12.19□□□□□ -0.46
TDP1-201ENST00000335725 NCBP3Q53F19 620 aaKnown RBP12.18□□□□□ -0.46
TDP1-201ENST00000335725 ZMYND15Q9H091 742 aa12.15□□□□□ -0.46
TDP1-201ENST00000335725 IL27Q8NEV9 243 aa12.14□□□□□ -0.47
TDP1-201ENST00000335725 RTL5Q5HYW3 569 aaPredicted RBP12.13□□□□□ -0.47
TDP1-201ENST00000335725 RSPH6AQ9H0K4 717 aa12.12□□□□□ -0.47
TDP1-201ENST00000335725 FGD1P98174 961 aa12.12□□□□□ -0.47
TDP1-201ENST00000335725 RTN4Q9NQC3 1192 aaKnown RBP12.12□□□□□ -0.47
TDP1-201ENST00000335725 ARXQ96QS3 562 aa12.11□□□□□ -0.47
TDP1-201ENST00000335725 VSIG10Q8N0Z9 540 aa12.09□□□□□ -0.47
TDP1-201ENST00000335725 BCANQ96GW7 911 aa12.08□□□□□ -0.48
TDP1-201ENST00000335725 FKBP8Q14318 412 aa12.06□□□□□ -0.48
TDP1-201ENST00000335725 CDK11AQ9UQ88 783 aaPredicted RBP12.04□□□□□ -0.48
TDP1-201ENST00000335725 AAMPQ13685 434 aa12.02□□□□□ -0.49
TDP1-201ENST00000335725 A0A0U1RQG5 324 aaPredicted RBP12.01□□□□□ -0.49
TDP1-201ENST00000335725 C11orf95C9JLR9 678 aaPredicted RBP12.01□□□□□ -0.49
TDP1-201ENST00000335725 NBR1Q14596 966 aa12□□□□□ -0.49
TDP1-201ENST00000335725 SHROOM4Q9ULL8 1493 aa12□□□□□ -0.49
TDP1-201ENST00000335725 TAF7LQ5H9L4 462 aa12□□□□□ -0.49
TDP1-201ENST00000335725 NOP58Q9Y2X3 529 aaKnown RBP12□□□□□ -0.49
TDP1-201ENST00000335725 RBM10P98175 930 aaKnown RBP11.99□□□□□ -0.49
TDP1-201ENST00000335725 KLHL34Q8N239 644 aa11.98□□□□□ -0.49
TDP1-201ENST00000335725 BCL11BQ9C0K0 894 aaPredicted RBP11.95□□□□□ -0.5
TDP1-201ENST00000335725 TIMELESSQ9UNS1 1208 aa11.93□□□□□ -0.5
TDP1-201ENST00000335725 USP35Q9P2H5 1018 aa11.87□□□□□ -0.51
TDP1-201ENST00000335725 ITGAEP38570 1179 aa11.87□□□□□ -0.51
TDP1-201ENST00000335725 ZNF326Q5BKZ1 582 aaKnown RBP11.87□□□□□ -0.51
TDP1-201ENST00000335725 WASHC2CQ9Y4E1 1318 aa11.85□□□□□ -0.51
TDP1-201ENST00000335725 RRP9O43818 475 aaKnown RBP11.85□□□□□ -0.51
TDP1-201ENST00000335725 WASHC2AQ641Q2 1341 aa11.83□□□□□ -0.51
TDP1-201ENST00000335725 HSP90AA2PQ14568 343 aaPredicted RBP11.83□□□□□ -0.52
TDP1-201ENST00000335725 FAM43AQ8N2R8 423 aa11.81□□□□□ -0.52
TDP1-201ENST00000335725 NEFMP07197 916 aa11.77□□□□□ -0.53
TDP1-201ENST00000335725 ZBTB47Q9UFB7 747 aaPredicted RBP11.77□□□□□ -0.53
TDP1-201ENST00000335725 ANP32AP39687 249 aaKnown RBP11.76□□□□□ -0.53
TDP1-201ENST00000335725 PAK3O75914 559 aaPredicted RBP11.75□□□□□ -0.53
TDP1-201ENST00000335725 IPO9Q96P70 1041 aaKnown RBP11.73□□□□□ -0.53
TDP1-201ENST00000335725 BRPF3Q9ULD4 1205 aa11.73□□□□□ -0.53
TDP1-201ENST00000335725 HSP90AA1P07900 732 aaKnown RBP11.72□□□□□ -0.53
TDP1-201ENST00000335725 RSPH4AQ5TD94 716 aa11.7□□□□□ -0.54
TDP1-201ENST00000335725 AEBP2Q6ZN18 517 aaPredicted RBP11.7□□□□□ -0.54
TDP1-201ENST00000335725 NAP1L5Q96NT1 182 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms