RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 NUP153P49790 1475 aaKnown RBP17.26■□□□□ 0.35
VPS33B-201ENST00000333371 HSPA5P11021 654 aaKnown RBP17.26■□□□□ 0.35
VPS33B-201ENST00000333371 JPH4Q96JJ6 628 aa17.26■□□□□ 0.35
VPS33B-201ENST00000333371 CDK11AQ9UQ88 783 aaPredicted RBP17.26■□□□□ 0.35
VPS33B-201ENST00000333371 WASHC2AQ641Q2 1341 aa17.24■□□□□ 0.35
VPS33B-201ENST00000333371 TCOF1Q13428 1488 aaKnown RBP17.23■□□□□ 0.35
VPS33B-201ENST00000333371 HNRNPUQ00839 825 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS33B-201ENST00000333371 MIA2Q96PC5 1412 aa17.22■□□□□ 0.35
VPS33B-201ENST00000333371 IRX6P78412 446 aaPredicted RBP17.22■□□□□ 0.35
VPS33B-201ENST00000333371 GCC2Q8IWJ2 1684 aa17.22■□□□□ 0.35
VPS33B-201ENST00000333371 PLB1Q6P1J6 1458 aa17.2■□□□□ 0.34
VPS33B-201ENST00000333371 CCDC184Q52MB2 194 aa17.19■□□□□ 0.34
VPS33B-201ENST00000333371 MPHOSPH9Q99550 1183 aa17.19■□□□□ 0.34
VPS33B-201ENST00000333371 L3MBTL2Q969R5 705 aa17.18■□□□□ 0.34
VPS33B-201ENST00000333371 C11orf95C9JLR9 678 aaPredicted RBP17.17■□□□□ 0.34
VPS33B-201ENST00000333371 ZNF644Q9H582 1327 aaPredicted RBP17.15■□□□□ 0.34
VPS33B-201ENST00000333371 EIF4G2P78344 907 aaKnown RBP eCLIP17.15■□□□□ 0.34
VPS33B-201ENST00000333371 TROQ12816 1431 aaPredicted RBP17.14■□□□□ 0.33
VPS33B-201ENST00000333371 RBM19Q9Y4C8 960 aaKnown RBP17.14■□□□□ 0.33
VPS33B-201ENST00000333371 PRG4Q92954 1404 aaPredicted RBP17.14■□□□□ 0.33
VPS33B-201ENST00000333371 ANP32EQ9BTT0 268 aa17.13■□□□□ 0.33
VPS33B-201ENST00000333371 CHD1O14646 1710 aa17.12■□□□□ 0.33
VPS33B-201ENST00000333371 NBPF8Q3BBV2 869 aa17.12■□□□□ 0.33
VPS33B-201ENST00000333371 AKNAQ7Z591 1439 aa17.11■□□□□ 0.33
VPS33B-201ENST00000333371 ITSN2Q9NZM3 1697 aa17.1■□□□□ 0.33
VPS33B-201ENST00000333371 DAPK1P53355 1430 aa17.09■□□□□ 0.33
VPS33B-201ENST00000333371 ABCA8O94911 1581 aa17.08■□□□□ 0.33
VPS33B-201ENST00000333371 CFDP1Q9UEE9 299 aaPredicted RBP17.08■□□□□ 0.32
VPS33B-201ENST00000333371 CNTLNQ9NXG0 1405 aa17.08■□□□□ 0.32
VPS33B-201ENST00000333371 DNMT1P26358 1616 aaKnown RBP17.08■□□□□ 0.32
VPS33B-201ENST00000333371 CNGB1Q14028 1251 aaPredicted RBP17.07■□□□□ 0.32
VPS33B-201ENST00000333371 FAM9BQ8IZU0 186 aa17.07■□□□□ 0.32
VPS33B-201ENST00000333371 KIF14Q15058 1648 aa17.07■□□□□ 0.32
VPS33B-201ENST00000333371 ADCY10Q96PN6 1610 aa17.07■□□□□ 0.32
VPS33B-201ENST00000333371 PLEKHD1A6NEE1 506 aa17.07■□□□□ 0.32
VPS33B-201ENST00000333371 CCDC7Q96M83 1385 aa17.05■□□□□ 0.32
VPS33B-201ENST00000333371 ABCC5O15440 1437 aa17.05■□□□□ 0.32
VPS33B-201ENST00000333371 ZNF777Q9ULD5 760 aaPredicted RBP17.05■□□□□ 0.32
VPS33B-201ENST00000333371 ANKRD30BQ9BXX2 1392 aa17.05■□□□□ 0.32
VPS33B-201ENST00000333371 PTPRGP23470 1445 aa17.05■□□□□ 0.32
VPS33B-201ENST00000333371 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
VPS33B-201ENST00000333371 CAMSAP2Q08AD1 1489 aa17.04■□□□□ 0.32
VPS33B-201ENST00000333371 PRKRIP1Q9H875 184 aaPredicted RBP17.04■□□□□ 0.32
VPS33B-201ENST00000333371 ROCK1Q13464 1354 aa17.03■□□□□ 0.32
VPS33B-201ENST00000333371 NCOA1Q15788 1441 aa17.03■□□□□ 0.32
VPS33B-201ENST00000333371 GPATCH8Q9UKJ3 1502 aaKnown RBP17.03■□□□□ 0.32
VPS33B-201ENST00000333371 ATP10BO94823 1461 aa17.03■□□□□ 0.32
VPS33B-201ENST00000333371 RPRD2Q5VT52 1461 aaKnown RBP17.02■□□□□ 0.31
VPS33B-201ENST00000333371 TEX14Q8IWB6 1497 aa17.01■□□□□ 0.31
VPS33B-201ENST00000333371 MRS2Q9HD23 443 aa17.01■□□□□ 0.31
VPS33B-201ENST00000333371 KIF7Q2M1P5 1343 aa17■□□□□ 0.31
VPS33B-201ENST00000333371 ZNF326Q5BKZ1 582 aaKnown RBP16.99■□□□□ 0.31
VPS33B-201ENST00000333371 POLR3GLQ9BT43 218 aa16.98■□□□□ 0.31
VPS33B-201ENST00000333371 SENP3-EIF4A1A0A087X0R7 540 aa16.98■□□□□ 0.31
VPS33B-201ENST00000333371 CDC42BPAQ5VT25 1732 aa16.97■□□□□ 0.31
VPS33B-201ENST00000333371 ADGBQ8N7X0 1667 aa16.96■□□□□ 0.31
VPS33B-201ENST00000333371 MSH5O43196 834 aa16.96■□□□□ 0.31
VPS33B-201ENST00000333371 SHROOM2Q13796 1616 aa16.96■□□□□ 0.31
VPS33B-201ENST00000333371 SPATA31E1Q6ZUB1 1445 aa16.95■□□□□ 0.3
VPS33B-201ENST00000333371 PZPP20742 1482 aa16.94■□□□□ 0.3
VPS33B-201ENST00000333371 CROCC2H7BZ55 1655 aa16.94■□□□□ 0.3
VPS33B-201ENST00000333371 ABCC10Q5T3U5 1492 aa16.93■□□□□ 0.3
VPS33B-201ENST00000333371 POLR1AO95602 1720 aaPredicted RBP16.91■□□□□ 0.3
VPS33B-201ENST00000333371 B4GALNT3Q6L9W6 998 aa16.91■□□□□ 0.3
VPS33B-201ENST00000333371 ANKRD30AQ9BXX3 1397 aa16.91■□□□□ 0.3
VPS33B-201ENST00000333371 BCORL1Q5H9F3 1711 aa16.9■□□□□ 0.3
VPS33B-201ENST00000333371 ERCC6L2Q5T890 1561 aa16.89■□□□□ 0.29
VPS33B-201ENST00000333371 PKD2Q13563 968 aa16.89■□□□□ 0.29
VPS33B-201ENST00000333371 ADGRL2O95490 1459 aa16.88■□□□□ 0.29
VPS33B-201ENST00000333371 ZBED9Q6R2W3 1325 aa16.88■□□□□ 0.29
VPS33B-201ENST00000333371 PPP4R2Q9NY27 417 aa16.87■□□□□ 0.29
VPS33B-201ENST00000333371 TSPY4P0CV99 314 aa16.86■□□□□ 0.29
VPS33B-201ENST00000333371 TSPY10P0CW01 314 aa16.86■□□□□ 0.29
VPS33B-201ENST00000333371 USP47Q96K76 1375 aa16.85■□□□□ 0.29
VPS33B-201ENST00000333371 ABCC2Q92887 1545 aa16.85■□□□□ 0.29
VPS33B-201ENST00000333371 C9orf84Q5VXU9 1444 aa16.85■□□□□ 0.29
VPS33B-201ENST00000333371 DHX29Q7Z478 1369 aaKnown RBP16.84■□□□□ 0.29
VPS33B-201ENST00000333371 SHANK2Q9UPX8 1470 aa16.84■□□□□ 0.29
VPS33B-201ENST00000333371 PREX2Q70Z35 1606 aa16.83■□□□□ 0.29
VPS33B-201ENST00000333371 KIAA1107Q9UPP5 1409 aa16.83■□□□□ 0.28
VPS33B-201ENST00000333371 HNRNPMP52272 730 aaKnown RBP eCLIP16.83■□□□□ 0.28
VPS33B-201ENST00000333371 CLASP1Q7Z460 1538 aa16.83■□□□□ 0.28
VPS33B-201ENST00000333371 MBD5Q9P267 1494 aa16.83■□□□□ 0.28
VPS33B-201ENST00000333371 ANKRD50Q9ULJ7 1429 aa16.83■□□□□ 0.28
VPS33B-201ENST00000333371 CDC42BPBQ9Y5S2 1711 aa16.82■□□□□ 0.28
VPS33B-201ENST00000333371 KDM2AQ9Y2K7 1162 aa16.8■□□□□ 0.28
VPS33B-201ENST00000333371 ARHGEF5Q12774 1597 aa16.8■□□□□ 0.28
VPS33B-201ENST00000333371 ARHGAP5Q13017 1502 aa16.79■□□□□ 0.28
VPS33B-201ENST00000333371 SAMD9LQ8IVG5 1584 aa16.79■□□□□ 0.28
VPS33B-201ENST00000333371 TTC37Q6PGP7 1564 aa16.79■□□□□ 0.28
VPS33B-201ENST00000333371 KDM5CP41229 1560 aa16.78■□□□□ 0.28
VPS33B-201ENST00000333371 CCDC141Q6ZP82 1450 aa16.78■□□□□ 0.28
VPS33B-201ENST00000333371 ERICH6BQ5W0A0 696 aa16.77■□□□□ 0.28
VPS33B-201ENST00000333371 NUP155O75694 1391 aa16.77■□□□□ 0.28
VPS33B-201ENST00000333371 FANCIQ9NVI1 1328 aa16.77■□□□□ 0.28
VPS33B-201ENST00000333371 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.77■□□□□ 0.27
VPS33B-201ENST00000333371 KIF15Q9NS87 1388 aa16.76■□□□□ 0.27
VPS33B-201ENST00000333371 MYO5CQ9NQX4 1742 aa16.76■□□□□ 0.27
VPS33B-201ENST00000333371 RSPH4AQ5TD94 716 aa16.76■□□□□ 0.27
VPS33B-201ENST00000333371 ZCCHC11Q5TAX3 1644 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms