RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ADGRL1O94910 1474 aa25.67■■□□□ 1.7
PDLIM1-201ENST00000329399 GPATCH8Q9UKJ3 1502 aaKnown RBP25.66■■□□□ 1.7
PDLIM1-201ENST00000329399 RICTORQ6R327 1708 aa25.63■■□□□ 1.69
PDLIM1-201ENST00000329399 TIAM1Q13009 1591 aa25.63■■□□□ 1.69
PDLIM1-201ENST00000329399 CFAP74Q9C0B2 1584 aa25.63■■□□□ 1.69
PDLIM1-201ENST00000329399 AFAP1Q8N556 730 aa25.62■■□□□ 1.69
PDLIM1-201ENST00000329399 CDC42BPAQ5VT25 1732 aa25.62■■□□□ 1.69
PDLIM1-201ENST00000329399 ARHGEF12Q9NZN5 1544 aa25.61■■□□□ 1.69
PDLIM1-201ENST00000329399 ZNF777Q9ULD5 760 aaPredicted RBP25.6■■□□□ 1.69
PDLIM1-201ENST00000329399 PREX2Q70Z35 1606 aa25.6■■□□□ 1.69
PDLIM1-201ENST00000329399 CCNB3Q8WWL7 1395 aa25.59■■□□□ 1.69
PDLIM1-201ENST00000329399 POGZQ7Z3K3 1410 aa25.58■■□□□ 1.69
PDLIM1-201ENST00000329399 EHBP1L1Q8N3D4 1523 aa25.58■■□□□ 1.69
PDLIM1-201ENST00000329399 ZNF644Q9H582 1327 aaPredicted RBP25.57■■□□□ 1.68
PDLIM1-201ENST00000329399 YEATS2Q9ULM3 1422 aa25.57■■□□□ 1.68
PDLIM1-201ENST00000329399 LRRC9Q6ZRR7 1453 aa25.56■■□□□ 1.68
PDLIM1-201ENST00000329399 CFDP1Q9UEE9 299 aaPredicted RBP25.56■■□□□ 1.68
PDLIM1-201ENST00000329399 TRAPPC8Q9Y2L5 1435 aa25.55■■□□□ 1.68
PDLIM1-201ENST00000329399 NCOA2Q15596 1464 aa25.54■■□□□ 1.68
PDLIM1-201ENST00000329399 HNRNPMP52272 730 aaKnown RBP eCLIP25.53■■□□□ 1.681e-6■■■■□ 23
PDLIM1-201ENST00000329399 AEBP2Q6ZN18 517 aaPredicted RBP25.53■■□□□ 1.68
PDLIM1-201ENST00000329399 MAP3K1Q13233 1512 aa25.51■■□□□ 1.67
PDLIM1-201ENST00000329399 SAMD9LQ8IVG5 1584 aa25.51■■□□□ 1.67
PDLIM1-201ENST00000329399 ZMYM4Q5VZL5 1548 aa25.5■■□□□ 1.67
PDLIM1-201ENST00000329399 ABCC1P33527 1531 aa25.5■■□□□ 1.67
PDLIM1-201ENST00000329399 ZNF518AQ6AHZ1 1483 aa25.46■■□□□ 1.67
PDLIM1-201ENST00000329399 SUPT6HQ7KZ85 1726 aaKnown RBP25.45■■□□□ 1.66
PDLIM1-201ENST00000329399 ARHGEF40Q8TER5 1519 aa25.45■■□□□ 1.66
PDLIM1-201ENST00000329399 ZFYVE16Q7Z3T8 1539 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 SYCP2Q9BX26 1530 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 KDM5CP41229 1560 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 SIGLEC1Q9BZZ2 1709 aa25.44■■□□□ 1.66
PDLIM1-201ENST00000329399 MAGI2Q86UL8 1455 aa25.43■■□□□ 1.66
PDLIM1-201ENST00000329399 APLP2Q06481 763 aa25.43■■□□□ 1.66
PDLIM1-201ENST00000329399 ITSN2Q9NZM3 1697 aa25.42■■□□□ 1.66
PDLIM1-201ENST00000329399 ARID4BQ4LE39 1312 aaPredicted RBP25.42■■□□□ 1.66
PDLIM1-201ENST00000329399 KIAA1107Q9UPP5 1409 aa25.41■■□□□ 1.66
PDLIM1-201ENST00000329399 MYT1LQ9UL68 1186 aa25.4■■□□□ 1.66
PDLIM1-201ENST00000329399 MBD5Q9P267 1494 aa25.38■■□□□ 1.65
PDLIM1-201ENST00000329399 ATP10AO60312 1499 aa25.37■■□□□ 1.65
PDLIM1-201ENST00000329399 MLH3Q9UHC1 1453 aa25.37■■□□□ 1.65
PDLIM1-201ENST00000329399 PLEKHH2Q8IVE3 1493 aa25.34■■□□□ 1.65
PDLIM1-201ENST00000329399 SPAG9O60271 1321 aaKnown RBP25.34■■□□□ 1.65
PDLIM1-201ENST00000329399 TRIM26Q12899 539 aaPredicted RBP25.34■■□□□ 1.65
PDLIM1-201ENST00000329399 HECW2Q9P2P5 1572 aa25.33■■□□□ 1.65
PDLIM1-201ENST00000329399 MLECQ14165 292 aa25.33■■□□□ 1.65
PDLIM1-201ENST00000329399 KIDINS220Q9ULH0 1771 aa25.32■■□□□ 1.64
PDLIM1-201ENST00000329399 DIP2CQ9Y2E4 1556 aa25.32■■□□□ 1.64
PDLIM1-201ENST00000329399 CAMSAP2Q08AD1 1489 aa25.32■■□□□ 1.64
PDLIM1-201ENST00000329399 ABCA6Q8N139 1617 aa25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 PPARGC1BQ86YN6 1023 aaKnown RBP25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 MYOM3Q5VTT5 1437 aa25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 C9orf84Q5VXU9 1444 aa25.3■■□□□ 1.64
PDLIM1-201ENST00000329399 ADAMTSL3P82987 1691 aa25.29■■□□□ 1.64
PDLIM1-201ENST00000329399 BCORL1Q5H9F3 1711 aa25.28■■□□□ 1.64
PDLIM1-201ENST00000329399 ATP7AQ04656 1500 aa25.22■■□□□ 1.63
PDLIM1-201ENST00000329399 MIA2Q96PC5 1412 aa25.22■■□□□ 1.63
PDLIM1-201ENST00000329399 MADDQ8WXG6 1647 aa25.22■■□□□ 1.63
PDLIM1-201ENST00000329399 INO80Q9ULG1 1556 aaPredicted RBP25.21■■□□□ 1.63
PDLIM1-201ENST00000329399 PTPRMP28827 1452 aa25.2■■□□□ 1.62
PDLIM1-201ENST00000329399 CCDC141Q6ZP82 1450 aa25.19■■□□□ 1.62
PDLIM1-201ENST00000329399 RSPH4AQ5TD94 716 aa25.17■■□□□ 1.62
PDLIM1-201ENST00000329399 REREQ9P2R6 1566 aa25.17■■□□□ 1.62
PDLIM1-201ENST00000329399 FGD6Q6ZV73 1430 aa25.17■■□□□ 1.62
PDLIM1-201ENST00000329399 PLPPR3Q6T4P5 718 aa25.15■■□□□ 1.62
PDLIM1-201ENST00000329399 RTEL1-TNFRSF6BF6WH68 1400 aa25.15■■□□□ 1.62
PDLIM1-201ENST00000329399 ARHGEF5Q12774 1597 aa25.15■■□□□ 1.62
PDLIM1-201ENST00000329399 A2MP01023 1474 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 TSPY4P0CV99 314 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 TSPY10P0CW01 314 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 AGLP35573 1532 aa25.13■■□□□ 1.61
PDLIM1-201ENST00000329399 PTPN23Q9H3S7 1636 aa25.12■■□□□ 1.61
PDLIM1-201ENST00000329399 RIMS1Q86UR5 1692 aaKnown RBP25.12■■□□□ 1.61
PDLIM1-201ENST00000329399 CEBPAP49715 358 aaPredicted RBP25.11■■□□□ 1.61
PDLIM1-201ENST00000329399 PCGF6Q9BYE7 350 aa25.11■■□□□ 1.61
PDLIM1-201ENST00000329399 ABCC5O15440 1437 aa25.1■■□□□ 1.61
PDLIM1-201ENST00000329399 TCOF1Q13428 1488 aaKnown RBP25.09■■□□□ 1.61
PDLIM1-201ENST00000329399 DHX29Q7Z478 1369 aaKnown RBP25.08■■□□□ 1.61
PDLIM1-201ENST00000329399 PLXNC1O60486 1568 aa25.08■■□□□ 1.61
PDLIM1-201ENST00000329399 FAM50AQ14320 339 aaKnown RBP25.05■■□□□ 1.6
PDLIM1-201ENST00000329399 GGT6Q6P531 493 aa25.05■■□□□ 1.6
PDLIM1-201ENST00000329399 FER1L4A9Z1Z3 1794 aa25.05■■□□□ 1.6
PDLIM1-201ENST00000329399 CHIC2Q9UKJ5 165 aa25.03■■□□□ 1.6
PDLIM1-201ENST00000329399 ADGBQ8N7X0 1667 aa25.03■■□□□ 1.6
PDLIM1-201ENST00000329399 DAPK1P53355 1430 aa25.02■■□□□ 1.6
PDLIM1-201ENST00000329399 KIF3BO15066 747 aa25.02■■□□□ 1.6
PDLIM1-201ENST00000329399 MAST1Q9Y2H9 1570 aa25■■□□□ 1.59
PDLIM1-201ENST00000329399 RRP7BPQ9NSQ0 103 aa24.99■■□□□ 1.59
PDLIM1-201ENST00000329399 DNMT1P26358 1616 aaKnown RBP24.97■■□□□ 1.59
PDLIM1-201ENST00000329399 PTPRKQ15262 1439 aa24.95■■□□□ 1.58
PDLIM1-201ENST00000329399 ESF1Q9H501 851 aaKnown RBP24.94■■□□□ 1.58
PDLIM1-201ENST00000329399 SHANK2Q9UPX8 1470 aa24.93■■□□□ 1.58
PDLIM1-201ENST00000329399 CROCC2H7BZ55 1655 aa24.92■■□□□ 1.58
PDLIM1-201ENST00000329399 ZMYM3Q14202 1370 aa24.91■■□□□ 1.58
PDLIM1-201ENST00000329399 KIF15Q9NS87 1388 aa24.91■■□□□ 1.58
PDLIM1-201ENST00000329399 NCOA1Q15788 1441 aa24.89■■□□□ 1.57
PDLIM1-201ENST00000329399 C3P01024 1663 aa24.88■■□□□ 1.57
PDLIM1-201ENST00000329399 HSPA2P54652 639 aa24.88■■□□□ 1.57
PDLIM1-201ENST00000329399 LMTK3Q96Q04 1460 aa24.87■■□□□ 1.57
PDLIM1-201ENST00000329399 CNTLNQ9NXG0 1405 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms