RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 NISCHQ9Y2I1 1504 aa39.45■■■■□ 3.91
PDLIM1-201ENST00000329399 CCDC180Q9P1Z9 1646 aa34.91■■■■□ 3.18
PDLIM1-201ENST00000329399 ABCC9O60706 1549 aa34.46■■■■□ 3.11
PDLIM1-201ENST00000329399 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
PDLIM1-201ENST00000329399 RB1CC1Q8TDY2 1594 aa32.94■■■□□ 2.86
PDLIM1-201ENST00000329399 NACADO15069 1562 aa32.9■■■□□ 2.86
PDLIM1-201ENST00000329399 ZCCHC6Q5VYS8 1495 aaKnown RBP32.82■■■□□ 2.85
PDLIM1-201ENST00000329399 MYO15BQ96JP2 1530 aa32.66■■■□□ 2.82
PDLIM1-201ENST00000329399 DCAF1Q9Y4B6 1507 aa32.53■■■□□ 2.8
PDLIM1-201ENST00000329399 PABPN1Q86U42 306 aaKnown RBP eCLIP32.31■■■□□ 2.76
PDLIM1-201ENST00000329399 UNC13AQ9UPW8 1703 aa32.26■■■□□ 2.76
PDLIM1-201ENST00000329399 BICRAQ9NZM4 1560 aa32.1■■■□□ 2.73
PDLIM1-201ENST00000329399 SCRIBQ14160 1630 aa32.02■■■□□ 2.72
PDLIM1-201ENST00000329399 DNAJC5BQ9UF47 199 aa31.89■■■□□ 2.7
PDLIM1-201ENST00000329399 SHROOM4Q9ULL8 1493 aa31.5■■■□□ 2.63
PDLIM1-201ENST00000329399 EIF4G1Q04637 1599 aaKnown RBP31.19■■■□□ 2.58
PDLIM1-201ENST00000329399 CC2D2AQ9P2K1 1620 aa31.09■■■□□ 2.57
PDLIM1-201ENST00000329399 CECR2Q9BXF3 1484 aa30.91■■■□□ 2.54
PDLIM1-201ENST00000329399 SMARCA4P51532 1647 aa30.57■■■□□ 2.49
PDLIM1-201ENST00000329399 ATAD2BQ9ULI0 1458 aa30.49■■■□□ 2.47
PDLIM1-201ENST00000329399 BAZ1AQ9NRL2 1556 aaPredicted RBP30.49■■■□□ 2.47
PDLIM1-201ENST00000329399 MROH2BQ7Z745 1585 aa30.47■■■□□ 2.47
PDLIM1-201ENST00000329399 NCAPD3P42695 1498 aa30.45■■■□□ 2.46
PDLIM1-201ENST00000329399 SMARCA2P51531 1590 aa30.32■■■□□ 2.44
PDLIM1-201ENST00000329399 PEG3Q9GZU2 1588 aa30.24■■■□□ 2.43
PDLIM1-201ENST00000329399 HMGXB3Q12766 1538 aa30.2■■■□□ 2.43
PDLIM1-201ENST00000329399 BAZ1BQ9UIG0 1483 aaKnown RBP30.17■■■□□ 2.42
PDLIM1-201ENST00000329399 RSF1Q96T23 1441 aaPredicted RBP30.12■■■□□ 2.41
PDLIM1-201ENST00000329399 WIZO95785 1651 aa30.11■■■□□ 2.41
PDLIM1-201ENST00000329399 NESP48681 1621 aa29.86■■■□□ 2.37
PDLIM1-201ENST00000329399 TOP2AP11388 1531 aaKnown RBP29.7■■■□□ 2.34
PDLIM1-201ENST00000329399 ERCC6Q03468 1493 aa29.59■■■□□ 2.33
PDLIM1-201ENST00000329399 CADPSQ9ULU8 1353 aa29.58■■■□□ 2.33
PDLIM1-201ENST00000329399 LAMC3Q9Y6N6 1575 aa29.55■■■□□ 2.32
PDLIM1-201ENST00000329399 CCDC88BA6NC98 1476 aa29.47■■■□□ 2.31
PDLIM1-201ENST00000329399 SUPT5HO00267 1087 aaKnown RBP29.41■■■□□ 2.3
PDLIM1-201ENST00000329399 PDS5BQ9NTI5 1447 aa29.41■■■□□ 2.3
PDLIM1-201ENST00000329399 CFTRP13569 1480 aa29.38■■■□□ 2.29
PDLIM1-201ENST00000329399 KIF21AQ7Z4S6 1674 aa29.35■■■□□ 2.29
PDLIM1-201ENST00000329399 THOC2Q8NI27 1593 aaKnown RBP29.26■■■□□ 2.27
PDLIM1-201ENST00000329399 CUX2O14529 1486 aa29.25■■■□□ 2.27
PDLIM1-201ENST00000329399 FANCD2Q9BXW9 1451 aa29.23■■■□□ 2.27
PDLIM1-201ENST00000329399 CEP164Q9UPV0 1460 aa29.13■■■□□ 2.25
PDLIM1-201ENST00000329399 MRC2Q9UBG0 1479 aa29.12■■■□□ 2.25
PDLIM1-201ENST00000329399 WDR62O43379 1518 aa29.01■■■□□ 2.23
PDLIM1-201ENST00000329399 URB2Q14146 1524 aaKnown RBP28.99■■■□□ 2.23
PDLIM1-201ENST00000329399 PRDM2Q13029 1718 aa28.97■■■□□ 2.23
PDLIM1-201ENST00000329399 TOPBP1Q92547 1522 aa28.76■■■□□ 2.2
PDLIM1-201ENST00000329399 DNMBPQ6XZF7 1577 aa28.65■■■□□ 2.18
PDLIM1-201ENST00000329399 ABCC8Q09428 1581 aa28.62■■■□□ 2.17
PDLIM1-201ENST00000329399 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
PDLIM1-201ENST00000329399 CUX1P39880 1505 aa28.57■■■□□ 2.16
PDLIM1-201ENST00000329399 ZNF608Q9ULD9 1512 aaPredicted RBP28.55■■■□□ 2.16
PDLIM1-201ENST00000329399 POLA1P09884 1462 aaPredicted RBP28.53■■■□□ 2.16
PDLIM1-201ENST00000329399 IFT140Q96RY7 1462 aa28.53■■■□□ 2.16
PDLIM1-201ENST00000329399 RAD54L2Q9Y4B4 1467 aa28.48■■■□□ 2.15
PDLIM1-201ENST00000329399 FGD5Q6ZNL6 1462 aa28.45■■■□□ 2.14
PDLIM1-201ENST00000329399 TARBP1Q13395 1621 aaKnown RBP28.44■■■□□ 2.14
PDLIM1-201ENST00000329399 SOGA1O94964 1423 aa28.42■■■□□ 2.14
PDLIM1-201ENST00000329399 AQRO60306 1485 aaKnown RBP eCLIP28.39■■■□□ 2.148e-7■■■■□ 21.5
PDLIM1-201ENST00000329399 TDRD9Q8NDG6 1382 aaKnown RBP28.35■■■□□ 2.13
PDLIM1-201ENST00000329399 WRNQ14191 1432 aaPredicted RBP eCLIP28.31■■■□□ 2.12
PDLIM1-201ENST00000329399 EIF4G3O43432 1585 aaKnown RBP28.3■■■□□ 2.12
PDLIM1-201ENST00000329399 SYNJ1O43426 1573 aa28.28■■■□□ 2.12
PDLIM1-201ENST00000329399 TOP2BQ02880 1626 aa28.22■■■□□ 2.11
PDLIM1-201ENST00000329399 BIVM-ERCC5R4GMW8 1640 aa28.18■■■□□ 2.1
PDLIM1-201ENST00000329399 OSCARQ8IYS5 282 aa28.15■■■□□ 2.1
PDLIM1-201ENST00000329399 ABCA10Q8WWZ4 1543 aa28.13■■■□□ 2.09
PDLIM1-201ENST00000329399 WDR97A6NE52 1622 aa28.12■■■□□ 2.09
PDLIM1-201ENST00000329399 FBLN2P98095 1184 aa28.06■■■□□ 2.08
PDLIM1-201ENST00000329399 GAPVD1Q14C86 1478 aa28.06■■■□□ 2.08
PDLIM1-201ENST00000329399 SNAPC4Q5SXM2 1469 aa28.04■■■□□ 2.08
PDLIM1-201ENST00000329399 GRIN2BQ13224 1484 aa28.03■■■□□ 2.08
PDLIM1-201ENST00000329399 ABCA5Q8WWZ7 1642 aa28■■■□□ 2.07
PDLIM1-201ENST00000329399 CHD1O14646 1710 aa27.95■■■□□ 2.06
PDLIM1-201ENST00000329399 CHMP7Q8WUX9 453 aaPredicted RBP27.92■■■□□ 2.06
PDLIM1-201ENST00000329399 MAGI1Q96QZ7 1491 aaPredicted RBP27.92■■■□□ 2.06
PDLIM1-201ENST00000329399 PBRM1Q86U86 1689 aa27.91■■■□□ 2.06
PDLIM1-201ENST00000329399 SYNJ2O15056 1496 aa27.85■■■□□ 2.05
PDLIM1-201ENST00000329399 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
PDLIM1-201ENST00000329399 IGF1RP08069 1367 aa27.73■■■□□ 2.03
PDLIM1-201ENST00000329399 ADAMTS12P58397 1594 aa27.72■■■□□ 2.03
PDLIM1-201ENST00000329399 FHAD1B1AJZ9 1412 aa27.71■■■□□ 2.03
PDLIM1-201ENST00000329399 KIF27Q86VH2 1401 aa27.7■■■□□ 2.02
PDLIM1-201ENST00000329399 GRIN2AQ12879 1464 aa27.68■■■□□ 2.02
PDLIM1-201ENST00000329399 TRIM41Q8WV44 630 aa27.68■■■□□ 2.02
PDLIM1-201ENST00000329399 CLASP1Q7Z460 1538 aa27.67■■■□□ 2.02
PDLIM1-201ENST00000329399 RIMBP3CA6NJZ7 1639 aa27.66■■■□□ 2.02
PDLIM1-201ENST00000329399 RIMBP3BA6NNM3 1639 aa27.66■■■□□ 2.02
PDLIM1-201ENST00000329399 RIMBP3Q9UFD9 1639 aa27.66■■■□□ 2.02
PDLIM1-201ENST00000329399 ARHGEF11O15085 1522 aa27.66■■■□□ 2.02
PDLIM1-201ENST00000329399 RUSC2Q8N2Y8 1516 aa27.64■■■□□ 2.02
PDLIM1-201ENST00000329399 NUP160Q12769 1436 aa27.58■■■□□ 2.01
PDLIM1-201ENST00000329399 CEP170Q5SW79 1584 aa27.58■■■□□ 2.01
PDLIM1-201ENST00000329399 CYB5RLQ6IPT4 315 aa27.53■■■□□ 2
PDLIM1-201ENST00000329399 CARMIL1Q5VZK9 1371 aa27.5■■□□□ 1.99
PDLIM1-201ENST00000329399 CHIC1Q5VXU3 224 aa27.5■■□□□ 1.99
PDLIM1-201ENST00000329399 ARAP1Q96P48 1450 aa27.48■■□□□ 1.99
PDLIM1-201ENST00000329399 ERCC6L2Q5T890 1561 aa27.42■■□□□ 1.98
PDLIM1-201ENST00000329399 CUL7Q14999 1698 aa27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms