RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TPRNQ4KMQ1 711 aa8.4□□□□□ -1.06
VPS35-201ENST00000299138 ABCA10Q8WWZ4 1543 aa8.4□□□□□ -1.07
VPS35-201ENST00000299138 FANCD2Q9BXW9 1451 aa8.4□□□□□ -1.07
VPS35-201ENST00000299138 RALBP1Q15311 655 aa8.4□□□□□ -1.07
VPS35-201ENST00000299138 CUL7Q14999 1698 aa8.39□□□□□ -1.07
VPS35-201ENST00000299138 CCDC136Q96JN2 1154 aa8.39□□□□□ -1.07
VPS35-201ENST00000299138 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.39□□□□□ -1.07
VPS35-201ENST00000299138 KCNA4P22459 653 aa8.39□□□□□ -1.07
VPS35-201ENST00000299138 SMG6Q86US8 1419 aaKnown RBP8.38□□□□□ -1.07
VPS35-201ENST00000299138 NCOA2Q15596 1464 aa8.38□□□□□ -1.07
VPS35-201ENST00000299138 STAC3Q96MF2 364 aa8.38□□□□□ -1.07
VPS35-201ENST00000299138 CFAP43Q8NDM7 1665 aa8.38□□□□□ -1.07
VPS35-201ENST00000299138 NUDCQ9Y266 331 aa8.38□□□□□ -1.07
VPS35-201ENST00000299138 AAMPQ13685 434 aa8.37□□□□□ -1.07
VPS35-201ENST00000299138 IPO9Q96P70 1041 aaKnown RBP8.37□□□□□ -1.07
VPS35-201ENST00000299138 ZMYM4Q5VZL5 1548 aa8.37□□□□□ -1.07
VPS35-201ENST00000299138 ERCC6Q03468 1493 aa8.36□□□□□ -1.07
VPS35-201ENST00000299138 A0A0U1RQG5 324 aaPredicted RBP8.36□□□□□ -1.07
VPS35-201ENST00000299138 PRKRIP1Q9H875 184 aaPredicted RBP8.36□□□□□ -1.07
VPS35-201ENST00000299138 TRIM52Q96A61 297 aa8.36□□□□□ -1.07
VPS35-201ENST00000299138 TCOF1Q13428 1488 aaKnown RBP8.35□□□□□ -1.07
VPS35-201ENST00000299138 TULP1O00294 542 aaPredicted RBP8.35□□□□□ -1.07
VPS35-201ENST00000299138 CCDC7Q96M83 1385 aa8.35□□□□□ -1.07
VPS35-201ENST00000299138 NAIPQ13075 1403 aa8.34□□□□□ -1.07
VPS35-201ENST00000299138 ZBTB7CA1YPR0 619 aa8.33□□□□□ -1.08
VPS35-201ENST00000299138 HAP1P54257 671 aaPredicted RBP8.33□□□□□ -1.08
VPS35-201ENST00000299138 CDCA8Q53HL2 280 aa8.33□□□□□ -1.08
VPS35-201ENST00000299138 RSPH4AQ5TD94 716 aa8.33□□□□□ -1.08
VPS35-201ENST00000299138 DNMBPQ6XZF7 1577 aa8.33□□□□□ -1.08
VPS35-201ENST00000299138 BRD4O60885 1362 aaPredicted RBP8.33□□□□□ -1.08
VPS35-201ENST00000299138 PLEKHH2Q8IVE3 1493 aa8.33□□□□□ -1.08
VPS35-201ENST00000299138 NCOA1Q15788 1441 aa8.32□□□□□ -1.08
VPS35-201ENST00000299138 HSPA5P11021 654 aaKnown RBP8.32□□□□□ -1.08
VPS35-201ENST00000299138 PLCB2Q00722 1185 aa8.32□□□□□ -1.08
VPS35-201ENST00000299138 EIF3AQ14152 1382 aaKnown RBP8.32□□□□□ -1.08
VPS35-201ENST00000299138 WDR97A6NE52 1622 aa8.32□□□□□ -1.08
VPS35-201ENST00000299138 SIN3AQ96ST3 1273 aa8.32□□□□□ -1.08
VPS35-201ENST00000299138 KIF15Q9NS87 1388 aa8.32□□□□□ -1.08
VPS35-201ENST00000299138 ADRA2BP18089 450 aa8.31□□□□□ -1.08
VPS35-201ENST00000299138 DEKP35659 375 aaKnown RBP8.31□□□□□ -1.08
VPS35-201ENST00000299138 CHMP7Q8WUX9 453 aaPredicted RBP8.31□□□□□ -1.08
VPS35-201ENST00000299138 TMC1Q8TDI8 760 aa8.3□□□□□ -1.08
VPS35-201ENST00000299138 NCBP3Q53F19 620 aaKnown RBP8.3□□□□□ -1.08
VPS35-201ENST00000299138 TDRD9Q8NDG6 1382 aaKnown RBP8.3□□□□□ -1.08
VPS35-201ENST00000299138 VSIG10Q8N0Z9 540 aa8.3□□□□□ -1.08
VPS35-201ENST00000299138 KIF21AQ7Z4S6 1674 aa8.3□□□□□ -1.08
VPS35-201ENST00000299138 RNF123Q5XPI4 1314 aa8.3□□□□□ -1.08
VPS35-201ENST00000299138 LAS1LQ9Y4W2 734 aaKnown RBP8.3□□□□□ -1.08
VPS35-201ENST00000299138 PTPN23Q9H3S7 1636 aa8.29□□□□□ -1.08
VPS35-201ENST00000299138 IRX6P78412 446 aaPredicted RBP8.29□□□□□ -1.08
VPS35-201ENST00000299138 C11orf95C9JLR9 678 aaPredicted RBP8.29□□□□□ -1.08
VPS35-201ENST00000299138 SUPT6HQ7KZ85 1726 aaKnown RBP8.29□□□□□ -1.08
VPS35-201ENST00000299138 HECW1Q76N89 1606 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 ANKRD30AQ9BXX3 1397 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 RPRD2Q5VT52 1461 aaKnown RBP8.28□□□□□ -1.08
VPS35-201ENST00000299138 APPP05067 770 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 FHOD3Q2V2M9 1422 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 ARID3CA6NKF2 412 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 NLRP13Q86W25 1043 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 MPHOSPH9Q99550 1183 aa8.28□□□□□ -1.08
VPS35-201ENST00000299138 ISY1Q9ULR0 285 aaKnown RBP8.27□□□□□ -1.08
VPS35-201ENST00000299138 NINLQ9Y2I6 1382 aa8.27□□□□□ -1.09
VPS35-201ENST00000299138 GOLGA6L22H0YM25 854 aa8.27□□□□□ -1.09
VPS35-201ENST00000299138 NESP48681 1621 aa8.27□□□□□ -1.09
VPS35-201ENST00000299138 PTMSP20962 102 aa8.27□□□□□ -1.09
VPS35-201ENST00000299138 SALL2Q9Y467 1007 aaPredicted RBP8.27□□□□□ -1.09
VPS35-201ENST00000299138 BECN1Q14457 450 aa8.27□□□□□ -1.09
VPS35-201ENST00000299138 PODXL2Q9NZ53 605 aa8.27□□□□□ -1.09
VPS35-201ENST00000299138 PCF11O94913 1555 aaKnown RBP8.27□□□□□ -1.09
VPS35-201ENST00000299138 MYBBP1AQ9BQG0 1328 aaKnown RBP8.26□□□□□ -1.09
VPS35-201ENST00000299138 ARHGEF12Q9NZN5 1544 aa8.26□□□□□ -1.09
VPS35-201ENST00000299138 ZRSR1Q15695 479 aaKnown RBP8.26□□□□□ -1.09
VPS35-201ENST00000299138 L1TD1Q5T7N2 865 aaKnown RBP8.26□□□□□ -1.09
VPS35-201ENST00000299138 RAD54L2Q9Y4B4 1467 aa8.26□□□□□ -1.09
VPS35-201ENST00000299138 CHAF1AQ13111 956 aaPredicted RBP8.25□□□□□ -1.09
VPS35-201ENST00000299138 CCDC144AA2RUR9 1427 aa8.25□□□□□ -1.09
VPS35-201ENST00000299138 GRIN2BQ13224 1484 aa8.25□□□□□ -1.09
VPS35-201ENST00000299138 MSNP26038 577 aaKnown RBP8.24□□□□□ -1.09
VPS35-201ENST00000299138 FAM9BQ8IZU0 186 aa8.24□□□□□ -1.09
VPS35-201ENST00000299138 CFAP44Q96MT7 982 aa8.24□□□□□ -1.09
VPS35-201ENST00000299138 UGGT2Q9NYU1 1516 aa8.24□□□□□ -1.09
VPS35-201ENST00000299138 SNAPC4Q5SXM2 1469 aa8.24□□□□□ -1.09
VPS35-201ENST00000299138 RSPH6AQ9H0K4 717 aa8.24□□□□□ -1.09
VPS35-201ENST00000299138 ZMYM3Q14202 1370 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 L3MBTL2Q969R5 705 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 ANKRD30BQ9BXX2 1392 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 TOPBP1Q92547 1522 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 PRDM2Q13029 1718 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 TEX14Q8IWB6 1497 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 ARHGEF11O15085 1522 aa8.23□□□□□ -1.09
VPS35-201ENST00000299138 TSPY4P0CV99 314 aa8.22□□□□□ -1.09
VPS35-201ENST00000299138 TSPY10P0CW01 314 aa8.22□□□□□ -1.09
VPS35-201ENST00000299138 LAMC3Q9Y6N6 1575 aa8.22□□□□□ -1.09
VPS35-201ENST00000299138 KIAA1107Q9UPP5 1409 aa8.22□□□□□ -1.09
VPS35-201ENST00000299138 SCAPERQ9BY12 1400 aa8.21□□□□□ -1.1
VPS35-201ENST00000299138 GAPVD1Q14C86 1478 aa8.21□□□□□ -1.1
VPS35-201ENST00000299138 UHRF1BP1Q6BDS2 1440 aa8.21□□□□□ -1.1
VPS35-201ENST00000299138 CARMIL2Q6F5E8 1435 aa8.21□□□□□ -1.1
VPS35-201ENST00000299138 POLA1P09884 1462 aaPredicted RBP8.21□□□□□ -1.1
VPS35-201ENST00000299138 CHMP4BQ9H444 224 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms