RNA–Protein interactions for RNA: ENST00000287814.4

TIMP4-201, Transcript of TIMP metallopeptidase inhibitor 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TIMP4, Length 1,650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4-201ENST00000287814 RAPGEF3O95398 923 aa31.23■■■□□ 2.59
TIMP4-201ENST00000287814 CDC42BPBQ9Y5S2 1711 aa31.23■■■□□ 2.59
TIMP4-201ENST00000287814 CDC42BPAQ5VT25 1732 aa31.21■■■□□ 2.59
TIMP4-201ENST00000287814 PREX2Q70Z35 1606 aa31.21■■■□□ 2.59
TIMP4-201ENST00000287814 CCNB3Q8WWL7 1395 aa31.2■■■□□ 2.59
TIMP4-201ENST00000287814 CFAP74Q9C0B2 1584 aa31.2■■■□□ 2.59
TIMP4-201ENST00000287814 NCOA2Q15596 1464 aa31.19■■■□□ 2.58
TIMP4-201ENST00000287814 ADGRL1O94910 1474 aa31.16■■■□□ 2.58
TIMP4-201ENST00000287814 SUPT6HQ7KZ85 1726 aaKnown RBP31.15■■■□□ 2.58
TIMP4-201ENST00000287814 SCAPERQ9BY12 1400 aa31.15■■■□□ 2.58
TIMP4-201ENST00000287814 DENND4BO75064 1496 aaPredicted RBP31.14■■■□□ 2.58
TIMP4-201ENST00000287814 CFDP1Q9UEE9 299 aaPredicted RBP31.13■■■□□ 2.57
TIMP4-201ENST00000287814 FRMPD1Q5SYB0 1578 aa31.12■■■□□ 2.57
TIMP4-201ENST00000287814 ZNF777Q9ULD5 760 aaPredicted RBP31.12■■■□□ 2.57
TIMP4-201ENST00000287814 ARHGEF12Q9NZN5 1544 aa31.07■■■□□ 2.56
TIMP4-201ENST00000287814 RICTORQ6R327 1708 aa31.06■■■□□ 2.56
TIMP4-201ENST00000287814 SAMD9LQ8IVG5 1584 aa31.05■■■□□ 2.56
TIMP4-201ENST00000287814 POGZQ7Z3K3 1410 aa31.05■■■□□ 2.56
TIMP4-201ENST00000287814 ZNF644Q9H582 1327 aaPredicted RBP31.05■■■□□ 2.56
TIMP4-201ENST00000287814 AFAP1Q8N556 730 aa31.03■■■□□ 2.56
TIMP4-201ENST00000287814 ABCC1P33527 1531 aa31.03■■■□□ 2.56
TIMP4-201ENST00000287814 ITSN2Q9NZM3 1697 aa31.01■■■□□ 2.55
TIMP4-201ENST00000287814 TRAPPC8Q9Y2L5 1435 aa31■■■□□ 2.55
TIMP4-201ENST00000287814 HNRNPMP52272 730 aaKnown RBP eCLIP31■■■□□ 2.55
TIMP4-201ENST00000287814 SYCP2Q9BX26 1530 aa30.95■■■□□ 2.55
TIMP4-201ENST00000287814 ZNF518AQ6AHZ1 1483 aa30.95■■■□□ 2.55
TIMP4-201ENST00000287814 ZMYM4Q5VZL5 1548 aa30.95■■■□□ 2.54
TIMP4-201ENST00000287814 KIAA1107Q9UPP5 1409 aa30.95■■■□□ 2.54
TIMP4-201ENST00000287814 PPARGC1BQ86YN6 1023 aaKnown RBP30.94■■■□□ 2.54
TIMP4-201ENST00000287814 MYOM3Q5VTT5 1437 aa30.94■■■□□ 2.54
TIMP4-201ENST00000287814 PLEKHH2Q8IVE3 1493 aa30.92■■■□□ 2.54
TIMP4-201ENST00000287814 YEATS2Q9ULM3 1422 aa30.91■■■□□ 2.54
TIMP4-201ENST00000287814 KDM5CP41229 1560 aa30.91■■■□□ 2.54
TIMP4-201ENST00000287814 MBD5Q9P267 1494 aa30.89■■■□□ 2.54
TIMP4-201ENST00000287814 CAMSAP2Q08AD1 1489 aa30.89■■■□□ 2.53
TIMP4-201ENST00000287814 MAGI2Q86UL8 1455 aa30.88■■■□□ 2.53
TIMP4-201ENST00000287814 MIA2Q96PC5 1412 aa30.87■■■□□ 2.53
TIMP4-201ENST00000287814 ZFYVE16Q7Z3T8 1539 aa30.85■■■□□ 2.53
TIMP4-201ENST00000287814 ARHGEF40Q8TER5 1519 aa30.84■■■□□ 2.53
TIMP4-201ENST00000287814 MLH3Q9UHC1 1453 aa30.83■■■□□ 2.53
TIMP4-201ENST00000287814 MYT1LQ9UL68 1186 aa30.82■■■□□ 2.52
TIMP4-201ENST00000287814 HECW2Q9P2P5 1572 aa30.8■■■□□ 2.52
TIMP4-201ENST00000287814 FGD6Q6ZV73 1430 aa30.79■■■□□ 2.52
TIMP4-201ENST00000287814 SPAG9O60271 1321 aaKnown RBP30.79■■■□□ 2.52
TIMP4-201ENST00000287814 KDM4FA0A1W2PPD8 638 aa30.76■■■□□ 2.51
TIMP4-201ENST00000287814 KIDINS220Q9ULH0 1771 aa30.75■■■□□ 2.51
TIMP4-201ENST00000287814 ATP10AO60312 1499 aa30.75■■■□□ 2.51
TIMP4-201ENST00000287814 RSPH4AQ5TD94 716 aa30.74■■■□□ 2.51
TIMP4-201ENST00000287814 PTPN23Q9H3S7 1636 aa30.73■■■□□ 2.51
TIMP4-201ENST00000287814 CCDC141Q6ZP82 1450 aa30.73■■■□□ 2.51
TIMP4-201ENST00000287814 DIP2CQ9Y2E4 1556 aa30.72■■■□□ 2.51
TIMP4-201ENST00000287814 SIGLEC1Q9BZZ2 1709 aa30.71■■■□□ 2.51
TIMP4-201ENST00000287814 ARHGEF5Q12774 1597 aa30.71■■■□□ 2.51
TIMP4-201ENST00000287814 ABCA6Q8N139 1617 aa30.71■■■□□ 2.51
TIMP4-201ENST00000287814 TCOF1Q13428 1488 aaKnown RBP30.7■■■□□ 2.51
TIMP4-201ENST00000287814 ARID4BQ4LE39 1312 aaPredicted RBP30.7■■■□□ 2.5
TIMP4-201ENST00000287814 ATP7AQ04656 1500 aa30.69■■■□□ 2.5
TIMP4-201ENST00000287814 INO80Q9ULG1 1556 aaPredicted RBP30.69■■■□□ 2.5
TIMP4-201ENST00000287814 C9orf84Q5VXU9 1444 aa30.68■■■□□ 2.5
TIMP4-201ENST00000287814 RTEL1-TNFRSF6BF6WH68 1400 aa30.65■■■□□ 2.5
TIMP4-201ENST00000287814 TSPY4P0CV99 314 aa30.65■■■□□ 2.5
TIMP4-201ENST00000287814 TSPY10P0CW01 314 aa30.65■■■□□ 2.5
TIMP4-201ENST00000287814 FAM50AQ14320 339 aaKnown RBP30.62■■■□□ 2.49
TIMP4-201ENST00000287814 ABCC5O15440 1437 aa30.62■■■□□ 2.49
TIMP4-201ENST00000287814 REREQ9P2R6 1566 aa30.59■■■□□ 2.49
TIMP4-201ENST00000287814 DAPK1P53355 1430 aa30.57■■■□□ 2.48
TIMP4-201ENST00000287814 MLECQ14165 292 aa30.57■■■□□ 2.48
TIMP4-201ENST00000287814 BCORL1Q5H9F3 1711 aa30.56■■■□□ 2.48
TIMP4-201ENST00000287814 A2MP01023 1474 aa30.54■■■□□ 2.48
TIMP4-201ENST00000287814 DNMT1P26358 1616 aaKnown RBP30.54■■■□□ 2.48
TIMP4-201ENST00000287814 MAST1Q9Y2H9 1570 aa30.54■■■□□ 2.48
TIMP4-201ENST00000287814 ADAMTSL3P82987 1691 aa30.52■■■□□ 2.48
TIMP4-201ENST00000287814 AGLP35573 1532 aa30.52■■■□□ 2.48
TIMP4-201ENST00000287814 PLXNC1O60486 1568 aa30.5■■■□□ 2.47
TIMP4-201ENST00000287814 DHX29Q7Z478 1369 aaKnown RBP30.49■■■□□ 2.47
TIMP4-201ENST00000287814 SHANK2Q9UPX8 1470 aa30.49■■■□□ 2.47
TIMP4-201ENST00000287814 CHIC2Q9UKJ5 165 aa30.49■■■□□ 2.47
TIMP4-201ENST00000287814 CROCC2H7BZ55 1655 aa30.48■■■□□ 2.47
TIMP4-201ENST00000287814 ADGBQ8N7X0 1667 aa30.48■■■□□ 2.47
TIMP4-201ENST00000287814 RRBP1Q9P2E9 1410 aaKnown RBP30.46■■■□□ 2.47
TIMP4-201ENST00000287814 AEBP2Q6ZN18 517 aaPredicted RBP30.46■■■□□ 2.47
TIMP4-201ENST00000287814 PTPRKQ15262 1439 aa30.45■■■□□ 2.47
TIMP4-201ENST00000287814 MADDQ8WXG6 1647 aa30.44■■■□□ 2.46
TIMP4-201ENST00000287814 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.44■■■□□ 2.46
TIMP4-201ENST00000287814 RRP7BPQ9NSQ0 103 aa30.42■■■□□ 2.46
TIMP4-201ENST00000287814 ITGAEP38570 1179 aa30.39■■■□□ 2.45
TIMP4-201ENST00000287814 KIF15Q9NS87 1388 aa30.39■■■□□ 2.45
TIMP4-201ENST00000287814 NCOA1Q15788 1441 aa30.38■■■□□ 2.45
TIMP4-201ENST00000287814 KIF3BO15066 747 aa30.37■■■□□ 2.45
TIMP4-201ENST00000287814 GGT6Q6P531 493 aa30.36■■■□□ 2.45
TIMP4-201ENST00000287814 PTPRMP28827 1452 aa30.36■■■□□ 2.45
TIMP4-201ENST00000287814 ANKRD30AQ9BXX3 1397 aa30.36■■■□□ 2.45
TIMP4-201ENST00000287814 ADGRL2O95490 1459 aa30.35■■■□□ 2.45
TIMP4-201ENST00000287814 RIMS1Q86UR5 1692 aaKnown RBP30.33■■■□□ 2.45
TIMP4-201ENST00000287814 DUOX2Q9NRD8 1548 aa30.32■■■□□ 2.45
TIMP4-201ENST00000287814 FER1L4A9Z1Z3 1794 aa30.32■■■□□ 2.44
TIMP4-201ENST00000287814 PLPPR3Q6T4P5 718 aa30.27■■■□□ 2.44
TIMP4-201ENST00000287814 CEBPAP49715 358 aaPredicted RBP30.25■■■□□ 2.43
TIMP4-201ENST00000287814 ESF1Q9H501 851 aaKnown RBP30.24■■■□□ 2.43
TIMP4-201ENST00000287814 ERBINQ96RT1 1412 aa30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms