RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 FHAD1B1AJZ9 1412 aa14.66□□□□□ -0.06
USP53-201ENST00000274030 HSCBQ8IWL3 235 aa14.66□□□□□ -0.06
USP53-201ENST00000274030 CECR2Q9BXF3 1484 aa14.65□□□□□ -0.06
USP53-201ENST00000274030 PAK3O75914 559 aaPredicted RBP14.65□□□□□ -0.06
USP53-201ENST00000274030 GOLGA6L4A6NEF3 574 aa14.65□□□□□ -0.06
USP53-201ENST00000274030 RTF1Q92541 710 aaKnown RBP14.64□□□□□ -0.07
USP53-201ENST00000274030 U2AF1L5P0DN76 240 aaPredicted RBP14.64□□□□□ -0.07
USP53-201ENST00000274030 U2AF1Q01081 240 aaKnown RBP eCLIP14.64□□□□□ -0.07
USP53-201ENST00000274030 ZNF330Q9Y3S2 320 aaPredicted RBP14.63□□□□□ -0.07
USP53-201ENST00000274030 SETD5Q9C0A6 1442 aa14.62□□□□□ -0.07
USP53-201ENST00000274030 HDGFP51858 240 aaKnown RBP14.61□□□□□ -0.07
USP53-201ENST00000274030 ISY1Q9ULR0 285 aaKnown RBP14.61□□□□□ -0.07
USP53-201ENST00000274030 NUTM2DQ5VT03 806 aaPredicted RBP14.6□□□□□ -0.07
USP53-201ENST00000274030 RBM19Q9Y4C8 960 aaKnown RBP14.59□□□□□ -0.07
USP53-201ENST00000274030 CCER2I3L3R5 266 aa14.59□□□□□ -0.07
USP53-201ENST00000274030 KTN1Q86UP2 1357 aaKnown RBP14.59□□□□□ -0.07
USP53-201ENST00000274030 HDGFL2Q7Z4V5 671 aaPredicted RBP14.59□□□□□ -0.07
USP53-201ENST00000274030 MPHOSPH9Q99550 1183 aa14.58□□□□□ -0.07
USP53-201ENST00000274030 ITPRIPQ8IWB1 547 aa14.58□□□□□ -0.08
USP53-201ENST00000274030 RCAN3Q9UKA8 241 aa14.57□□□□□ -0.08
USP53-201ENST00000274030 ROCK2O75116 1388 aaKnown RBP14.57□□□□□ -0.08
USP53-201ENST00000274030 MCCP23508 829 aa14.57□□□□□ -0.08
USP53-201ENST00000274030 TIMELESSQ9UNS1 1208 aa14.57□□□□□ -0.08
USP53-201ENST00000274030 NUP155O75694 1391 aa14.56□□□□□ -0.08
USP53-201ENST00000274030 ARHGAP35Q9NRY4 1499 aa14.56□□□□□ -0.08
USP53-201ENST00000274030 CSB-PGBD3P0DP91 1061 aa14.56□□□□□ -0.08
USP53-201ENST00000274030 SLKQ9H2G2 1235 aaPredicted RBP14.56□□□□□ -0.08
USP53-201ENST00000274030 GOLGA6L6A8MZA4 724 aa14.56□□□□□ -0.08
USP53-201ENST00000274030 NACADO15069 1562 aa14.55□□□□□ -0.08
USP53-201ENST00000274030 NCBP3Q53F19 620 aaKnown RBP14.55□□□□□ -0.08
USP53-201ENST00000274030 GZF1Q9H116 711 aaPredicted RBP14.55□□□□□ -0.08
USP53-201ENST00000274030 TDRD9Q8NDG6 1382 aaKnown RBP14.54□□□□□ -0.08
USP53-201ENST00000274030 RAB3GAP2Q9H2M9 1393 aa14.54□□□□□ -0.08
USP53-201ENST00000274030 CLSTN1O94985 981 aa14.54□□□□□ -0.08
USP53-201ENST00000274030 CCDC146Q8IYE0 955 aa14.54□□□□□ -0.08
USP53-201ENST00000274030 CLUAP1Q96AJ1 413 aa14.54□□□□□ -0.08
USP53-201ENST00000274030 IPO8O15397 1037 aaKnown RBP14.54□□□□□ -0.08
USP53-201ENST00000274030 DRC7Q8IY82 874 aa14.54□□□□□ -0.08
USP53-201ENST00000274030 DEKP35659 375 aaKnown RBP14.53□□□□□ -0.08
USP53-201ENST00000274030 BAZ1AQ9NRL2 1556 aaPredicted RBP14.53□□□□□ -0.08
USP53-201ENST00000274030 NUTM2FA1L443 756 aa14.52□□□□□ -0.08
USP53-201ENST00000274030 KIAA1211Q6ZU35 1233 aa14.52□□□□□ -0.08
USP53-201ENST00000274030 VPS8Q8N3P4 1428 aa14.52□□□□□ -0.09
USP53-201ENST00000274030 KIF3BO15066 747 aa14.52□□□□□ -0.09
USP53-201ENST00000274030 NRDCO43847 1150 aa14.52□□□□□ -0.09
USP53-201ENST00000274030 HNRNPMP52272 730 aaKnown RBP eCLIP14.52□□□□□ -0.09
USP53-201ENST00000274030 ABCC8Q09428 1581 aa14.52□□□□□ -0.09
USP53-201ENST00000274030 AMER1Q5JTC6 1135 aaPredicted RBP14.51□□□□□ -0.09
USP53-201ENST00000274030 GNL2Q13823 731 aaKnown RBP14.51□□□□□ -0.09
USP53-201ENST00000274030 MSNP26038 577 aaKnown RBP14.5□□□□□ -0.09
USP53-201ENST00000274030 L3MBTL2Q969R5 705 aa14.5□□□□□ -0.09
USP53-201ENST00000274030 EFCAB2Q5VUJ9 269 aa14.49□□□□□ -0.09
USP53-201ENST00000274030 RWDD1Q9H446 243 aaPredicted RBP14.48□□□□□ -0.09
USP53-201ENST00000274030 MFAP1P55081 439 aaKnown RBP14.48□□□□□ -0.09
USP53-201ENST00000274030 SMC4Q9NTJ3 1288 aa14.48□□□□□ -0.09
USP53-201ENST00000274030 CHMP3Q9Y3E7 222 aa14.48□□□□□ -0.09
USP53-201ENST00000274030 SLC4A10Q6U841 1118 aa14.48□□□□□ -0.09
USP53-201ENST00000274030 RALBP1Q15311 655 aa14.47□□□□□ -0.09
USP53-201ENST00000274030 LTV1Q96GA3 475 aaPredicted RBP14.47□□□□□ -0.09
USP53-201ENST00000274030 CHAF1AQ13111 956 aaPredicted RBP14.46□□□□□ -0.09
USP53-201ENST00000274030 CCDC88BA6NC98 1476 aa14.46□□□□□ -0.09
USP53-201ENST00000274030 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.46□□□□□ -0.12e-6■■■□□ 16.8
USP53-201ENST00000274030 NOL8Q76FK4 1167 aaKnown RBP14.45□□□□□ -0.1
USP53-201ENST00000274030 FOXD4L1Q9NU39 408 aa14.45□□□□□ -0.1
USP53-201ENST00000274030 L1TD1Q5T7N2 865 aaKnown RBP14.45□□□□□ -0.1
USP53-201ENST00000274030 STK31Q9BXU1 1019 aa14.45□□□□□ -0.1
USP53-201ENST00000274030 TRIM6-TRIM34B2RNG4 842 aa14.45□□□□□ -0.1
USP53-201ENST00000274030 ARID3AQ99856 593 aa14.45□□□□□ -0.1
USP53-201ENST00000274030 CARMIL2Q6F5E8 1435 aa14.44□□□□□ -0.1
USP53-201ENST00000274030 CCDC9Q9Y3X0 531 aaKnown RBP14.44□□□□□ -0.1
USP53-201ENST00000274030 RRP7AQ9Y3A4 280 aaKnown RBP14.44□□□□□ -0.1
USP53-201ENST00000274030 CALD1Q05682 793 aaKnown RBP14.44□□□□□ -0.1
USP53-201ENST00000274030 ANKRD30AQ9BXX3 1397 aa14.43□□□□□ -0.1
USP53-201ENST00000274030 GORABQ5T7V8 394 aa14.43□□□□□ -0.1
USP53-201ENST00000274030 TRAK1Q9UPV9 953 aa14.43□□□□□ -0.1
USP53-201ENST00000274030 NGDNQ8NEJ9 315 aaKnown RBP14.42□□□□□ -0.1
USP53-201ENST00000274030 SPAG9O60271 1321 aaKnown RBP14.41□□□□□ -0.1
USP53-201ENST00000274030 GBP4Q96PP9 640 aa14.41□□□□□ -0.1
USP53-201ENST00000274030 TCERG1O14776 1098 aaKnown RBP14.4□□□□□ -0.1
USP53-201ENST00000274030 WASHC2CQ9Y4E1 1318 aa14.4□□□□□ -0.1
USP53-201ENST00000274030 ELL2O00472 640 aaPredicted RBP14.4□□□□□ -0.1
USP53-201ENST00000274030 CFAP44Q96MT7 982 aa14.4□□□□□ -0.1
USP53-201ENST00000274030 TERF2IPQ9NYB0 399 aa14.4□□□□□ -0.1
USP53-201ENST00000274030 TAF7LQ5H9L4 462 aa14.39□□□□□ -0.11
USP53-201ENST00000274030 BCL2L13Q9BXK5 485 aa14.39□□□□□ -0.11
USP53-201ENST00000274030 AMPHP49418 695 aa14.39□□□□□ -0.11
USP53-201ENST00000274030 PMFBP1Q8TBY8 1022 aa14.39□□□□□ -0.11
USP53-201ENST00000274030 MROH2BQ7Z745 1585 aa14.38□□□□□ -0.11
USP53-201ENST00000274030 FHOD3Q2V2M9 1422 aa14.38□□□□□ -0.11
USP53-201ENST00000274030 CENPJQ9HC77 1338 aaPredicted RBP14.37□□□□□ -0.11
USP53-201ENST00000274030 NLRP13Q86W25 1043 aa14.37□□□□□ -0.11
USP53-201ENST00000274030 FMN1Q68DA7 1419 aa14.37□□□□□ -0.11
USP53-201ENST00000274030 FOXD4L5Q5VV16 416 aaPredicted RBP14.37□□□□□ -0.11
USP53-201ENST00000274030 FOXD4L4Q8WXT5 416 aaPredicted RBP14.37□□□□□ -0.11
USP53-201ENST00000274030 HSP90B1P14625 803 aaKnown RBP14.37□□□□□ -0.11
USP53-201ENST00000274030 ST20-MTHFSA0A0A6YYL1 179 aa14.37□□□□□ -0.11
USP53-201ENST00000274030 EIF3AQ14152 1382 aaKnown RBP14.36□□□□□ -0.11
USP53-201ENST00000274030 PLIN1O60240 522 aa14.36□□□□□ -0.11
USP53-201ENST00000274030 TSHZ2Q9NRE2 1034 aa14.36□□□□□ -0.11
USP53-201ENST00000274030 PANK3Q9H999 370 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms