RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 PLPPR3Q6T4P5 718 aa11.39□□□□□ -0.59
PTPN3-201ENST00000262539 KIAA1107Q9UPP5 1409 aa11.39□□□□□ -0.59
PTPN3-201ENST00000262539 DISP1Q96F81 1524 aa11.39□□□□□ -0.59
PTPN3-201ENST00000262539 CHIC2Q9UKJ5 165 aa11.39□□□□□ -0.59
PTPN3-201ENST00000262539 CFAP43Q8NDM7 1665 aa11.38□□□□□ -0.59
PTPN3-201ENST00000262539 NUP153P49790 1475 aaKnown RBP11.38□□□□□ -0.59
PTPN3-201ENST00000262539 NAIPQ13075 1403 aa11.38□□□□□ -0.59
PTPN3-201ENST00000262539 ARID4BQ4LE39 1312 aaPredicted RBP11.38□□□□□ -0.59
PTPN3-201ENST00000262539 SHANK2Q9UPX8 1470 aa11.37□□□□□ -0.59
PTPN3-201ENST00000262539 MPHOSPH9Q99550 1183 aa11.37□□□□□ -0.59
PTPN3-201ENST00000262539 ANKRD50Q9ULJ7 1429 aa11.37□□□□□ -0.59
PTPN3-201ENST00000262539 ARID3CA6NKF2 412 aa11.36□□□□□ -0.59
PTPN3-201ENST00000262539 CDCA8Q53HL2 280 aa11.36□□□□□ -0.59
PTPN3-201ENST00000262539 UHRF1BP1LA0JNW5 1464 aa11.35□□□□□ -0.59
PTPN3-201ENST00000262539 DAPK1P53355 1430 aa11.34□□□□□ -0.59
PTPN3-201ENST00000262539 ROCK2O75116 1388 aaKnown RBP11.33□□□□□ -0.6
PTPN3-201ENST00000262539 ARHGEF11O15085 1522 aa11.33□□□□□ -0.6
PTPN3-201ENST00000262539 NUP155O75694 1391 aa11.33□□□□□ -0.6
PTPN3-201ENST00000262539 CCER2I3L3R5 266 aa11.32□□□□□ -0.6
PTPN3-201ENST00000262539 SPAG9O60271 1321 aaKnown RBP11.32□□□□□ -0.6
PTPN3-201ENST00000262539 RAPGEF6Q8TEU7 1601 aa11.32□□□□□ -0.6
PTPN3-201ENST00000262539 CCDC141Q6ZP82 1450 aa11.32□□□□□ -0.6
PTPN3-201ENST00000262539 KIF15Q9NS87 1388 aa11.31□□□□□ -0.6
PTPN3-201ENST00000262539 NCOA1Q15788 1441 aa11.3□□□□□ -0.6
PTPN3-201ENST00000262539 BCL11AQ9H165 835 aa11.3□□□□□ -0.6
PTPN3-201ENST00000262539 ADGRL2O95490 1459 aa11.3□□□□□ -0.6
PTPN3-201ENST00000262539 GPATCH8Q9UKJ3 1502 aaKnown RBP11.3□□□□□ -0.6
PTPN3-201ENST00000262539 PLB1Q6P1J6 1458 aa11.29□□□□□ -0.6
PTPN3-201ENST00000262539 ABCC2Q92887 1545 aa11.29□□□□□ -0.6
PTPN3-201ENST00000262539 KCNH8Q96L42 1107 aa11.29□□□□□ -0.6
PTPN3-201ENST00000262539 ATP10BO94823 1461 aa11.28□□□□□ -0.6
PTPN3-201ENST00000262539 ZBTB47Q9UFB7 747 aaPredicted RBP11.28□□□□□ -0.6
PTPN3-201ENST00000262539 C9orf84Q5VXU9 1444 aa11.28□□□□□ -0.6
PTPN3-201ENST00000262539 PBRM1Q86U86 1689 aa11.28□□□□□ -0.6
PTPN3-201ENST00000262539 ABCC5O15440 1437 aa11.28□□□□□ -0.6
PTPN3-201ENST00000262539 KIF14Q15058 1648 aa11.28□□□□□ -0.6
PTPN3-201ENST00000262539 PKD2Q13563 968 aa11.27□□□□□ -0.6
PTPN3-201ENST00000262539 ESF1Q9H501 851 aaKnown RBP11.26□□□□□ -0.61
PTPN3-201ENST00000262539 ARAP3Q8WWN8 1544 aa11.26□□□□□ -0.61
PTPN3-201ENST00000262539 CDK13Q14004 1512 aaKnown RBP11.26□□□□□ -0.61
PTPN3-201ENST00000262539 PTPN23Q9H3S7 1636 aa11.26□□□□□ -0.61
PTPN3-201ENST00000262539 RTEL1-TNFRSF6BF6WH68 1400 aa11.25□□□□□ -0.61
PTPN3-201ENST00000262539 PLCH2O75038 1416 aa11.25□□□□□ -0.61
PTPN3-201ENST00000262539 ABCA8O94911 1581 aa11.24□□□□□ -0.61
PTPN3-201ENST00000262539 CAMSAP2Q08AD1 1489 aa11.24□□□□□ -0.61
PTPN3-201ENST00000262539 CCDC144AA2RUR9 1427 aa11.23□□□□□ -0.61
PTPN3-201ENST00000262539 KDM5BQ9UGL1 1544 aa11.23□□□□□ -0.61
PTPN3-201ENST00000262539 ITSN2Q9NZM3 1697 aa11.22□□□□□ -0.61
PTPN3-201ENST00000262539 ZNF326Q5BKZ1 582 aaKnown RBP11.22□□□□□ -0.61
PTPN3-201ENST00000262539 SIN3AQ96ST3 1273 aa11.22□□□□□ -0.61
PTPN3-201ENST00000262539 PPP6R1Q9UPN7 881 aa11.21□□□□□ -0.61
PTPN3-201ENST00000262539 KTN1Q86UP2 1357 aaKnown RBP11.21□□□□□ -0.61
PTPN3-201ENST00000262539 WDR7Q9Y4E6 1490 aa11.21□□□□□ -0.61
PTPN3-201ENST00000262539 L3MBTL2Q969R5 705 aa11.2□□□□□ -0.62
PTPN3-201ENST00000262539 ANKRD30BQ9BXX2 1392 aa11.2□□□□□ -0.62
PTPN3-201ENST00000262539 CEP170Q5SW79 1584 aa11.2□□□□□ -0.62
PTPN3-201ENST00000262539 ARHGAP5Q13017 1502 aa11.19□□□□□ -0.62
PTPN3-201ENST00000262539 WASHC2AQ641Q2 1341 aa11.19□□□□□ -0.62
PTPN3-201ENST00000262539 WASHC2CQ9Y4E1 1318 aa11.19□□□□□ -0.62
PTPN3-201ENST00000262539 ABCC10Q5T3U5 1492 aa11.19□□□□□ -0.62
PTPN3-201ENST00000262539 HDGFP51858 240 aaKnown RBP11.18□□□□□ -0.62
PTPN3-201ENST00000262539 RPRD2Q5VT52 1461 aaKnown RBP11.18□□□□□ -0.62
PTPN3-201ENST00000262539 EIF3AQ14152 1382 aaKnown RBP11.18□□□□□ -0.62
PTPN3-201ENST00000262539 ERBINQ96RT1 1412 aa11.18□□□□□ -0.62
PTPN3-201ENST00000262539 HNRNPMP52272 730 aaKnown RBP eCLIP11.17□□□□□ -0.62
PTPN3-201ENST00000262539 ARHGEF5Q12774 1597 aa11.17□□□□□ -0.62
PTPN3-201ENST00000262539 CARD11Q9BXL7 1154 aa11.16□□□□□ -0.62
PTPN3-201ENST00000262539 NEFMP07197 916 aa11.16□□□□□ -0.62
PTPN3-201ENST00000262539 ZNF644Q9H582 1327 aaPredicted RBP11.15□□□□□ -0.62
PTPN3-201ENST00000262539 RPGRIP1LQ68CZ1 1315 aa11.14□□□□□ -0.63
PTPN3-201ENST00000262539 DNMT1P26358 1616 aaKnown RBP11.14□□□□□ -0.63
PTPN3-201ENST00000262539 DDX10Q13206 875 aaKnown RBP11.14□□□□□ -0.63
PTPN3-201ENST00000262539 STAG3Q9UJ98 1225 aa11.14□□□□□ -0.63
PTPN3-201ENST00000262539 ARHGEF12Q9NZN5 1544 aa11.14□□□□□ -0.63
PTPN3-201ENST00000262539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.13□□□□□ -0.634e-6■□□□□ 11.1
PTPN3-201ENST00000262539 TEX14Q8IWB6 1497 aa11.13□□□□□ -0.63
PTPN3-201ENST00000262539 PTPRKQ15262 1439 aa11.13□□□□□ -0.63
PTPN3-201ENST00000262539 SCAF1Q9H7N4 1312 aaKnown RBP11.13□□□□□ -0.63
PTPN3-201ENST00000262539 CANXP27824 592 aaKnown RBP11.12□□□□□ -0.63
PTPN3-201ENST00000262539 ERICH6BQ5W0A0 696 aa11.12□□□□□ -0.63
PTPN3-201ENST00000262539 DHX29Q7Z478 1369 aaKnown RBP11.12□□□□□ -0.63
PTPN3-201ENST00000262539 NGEFQ8N5V2 710 aa11.12□□□□□ -0.63
PTPN3-201ENST00000262539 A0A0G2JS52 829 aa11.12□□□□□ -0.63
PTPN3-201ENST00000262539 TMF1P82094 1093 aa11.12□□□□□ -0.63
PTPN3-201ENST00000262539 DUOX2Q9NRD8 1548 aa11.11□□□□□ -0.63
PTPN3-201ENST00000262539 SCAPERQ9BY12 1400 aa11.11□□□□□ -0.63
PTPN3-201ENST00000262539 NEO1Q92859 1461 aa11.11□□□□□ -0.63
PTPN3-201ENST00000262539 KIF3BO15066 747 aa11.11□□□□□ -0.63
PTPN3-201ENST00000262539 RALBP1Q15311 655 aa11.1□□□□□ -0.63
PTPN3-201ENST00000262539 MIER1Q8N108 512 aa11.1□□□□□ -0.63
PTPN3-201ENST00000262539 MAPKBP1O60336 1514 aa11.1□□□□□ -0.63
PTPN3-201ENST00000262539 HSPA5P11021 654 aaKnown RBP11.1□□□□□ -0.63
PTPN3-201ENST00000262539 MBD5Q9P267 1494 aa11.1□□□□□ -0.63
PTPN3-201ENST00000262539 ADCY10Q96PN6 1610 aa11.09□□□□□ -0.63
PTPN3-201ENST00000262539 SLC52A1Q9NWF4 448 aa11.09□□□□□ -0.63
PTPN3-201ENST00000262539 CD109Q6YHK3 1445 aa11.08□□□□□ -0.64
PTPN3-201ENST00000262539 ADGRL1O94910 1474 aa11.08□□□□□ -0.64
PTPN3-201ENST00000262539 DCAF11Q8TEB1 546 aa11.08□□□□□ -0.64
PTPN3-201ENST00000262539 ZNF518AQ6AHZ1 1483 aa11.08□□□□□ -0.64
PTPN3-201ENST00000262539 MAGI3Q5TCQ9 1506 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms