RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 KANK4Q5T7N3 995 aaPredicted RBP26.28■■□□□ 1.8
SDCBP-201ENST00000260130 CCNB3Q8WWL7 1395 aa26.27■■□□□ 1.8
SDCBP-201ENST00000260130 GPATCH8Q9UKJ3 1502 aaKnown RBP26.26■■□□□ 1.8
SDCBP-201ENST00000260130 PREX2Q70Z35 1606 aa26.25■■□□□ 1.79
SDCBP-201ENST00000260130 DENND4BO75064 1496 aaPredicted RBP26.25■■□□□ 1.79
SDCBP-201ENST00000260130 ADGRL1O94910 1474 aa26.25■■□□□ 1.79
SDCBP-201ENST00000260130 CDC42BPBQ9Y5S2 1711 aa26.24■■□□□ 1.79
SDCBP-201ENST00000260130 SCAPERQ9BY12 1400 aa26.24■■□□□ 1.79
SDCBP-201ENST00000260130 CDC42BPAQ5VT25 1732 aa26.23■■□□□ 1.79
SDCBP-201ENST00000260130 NCOA2Q15596 1464 aa26.22■■□□□ 1.79
SDCBP-201ENST00000260130 CFDP1Q9UEE9 299 aaPredicted RBP26.22■■□□□ 1.79
SDCBP-201ENST00000260130 SUPT6HQ7KZ85 1726 aaKnown RBP26.21■■□□□ 1.79
SDCBP-201ENST00000260130 ZNF777Q9ULD5 760 aaPredicted RBP26.19■■□□□ 1.78
SDCBP-201ENST00000260130 FRMPD1Q5SYB0 1578 aa26.16■■□□□ 1.78
SDCBP-201ENST00000260130 POGZQ7Z3K3 1410 aa26.15■■□□□ 1.78
SDCBP-201ENST00000260130 RICTORQ6R327 1708 aa26.14■■□□□ 1.77
SDCBP-201ENST00000260130 AFAP1Q8N556 730 aa26.11■■□□□ 1.77
SDCBP-201ENST00000260130 ABCC1P33527 1531 aa26.11■■□□□ 1.77
SDCBP-201ENST00000260130 ITSN2Q9NZM3 1697 aa26.1■■□□□ 1.77
SDCBP-201ENST00000260130 ARHGEF12Q9NZN5 1544 aa26.1■■□□□ 1.77
SDCBP-201ENST00000260130 SAMD9LQ8IVG5 1584 aa26.1■■□□□ 1.77
SDCBP-201ENST00000260130 ZNF518AQ6AHZ1 1483 aa26.09■■□□□ 1.77
SDCBP-201ENST00000260130 ZNF644Q9H582 1327 aaPredicted RBP26.08■■□□□ 1.77
SDCBP-201ENST00000260130 PLEKHH2Q8IVE3 1493 aa26.07■■□□□ 1.76
SDCBP-201ENST00000260130 ZMYM4Q5VZL5 1548 aa26.07■■□□□ 1.76
SDCBP-201ENST00000260130 HNRNPMP52272 730 aaKnown RBP eCLIP26.07■■□□□ 1.76
SDCBP-201ENST00000260130 KIAA1107Q9UPP5 1409 aa26.07■■□□□ 1.76
SDCBP-201ENST00000260130 TRAPPC8Q9Y2L5 1435 aa26.06■■□□□ 1.76
SDCBP-201ENST00000260130 MAGI2Q86UL8 1455 aa26.05■■□□□ 1.76
SDCBP-201ENST00000260130 SYCP2Q9BX26 1530 aa26.03■■□□□ 1.76
SDCBP-201ENST00000260130 MYOM3Q5VTT5 1437 aa26.02■■□□□ 1.76
SDCBP-201ENST00000260130 KDM5CP41229 1560 aa26.01■■□□□ 1.75
SDCBP-201ENST00000260130 YEATS2Q9ULM3 1422 aa26■■□□□ 1.75
SDCBP-201ENST00000260130 MYT1LQ9UL68 1186 aa26■■□□□ 1.75
SDCBP-201ENST00000260130 ZFYVE16Q7Z3T8 1539 aa25.99■■□□□ 1.75
SDCBP-201ENST00000260130 MIA2Q96PC5 1412 aa25.99■■□□□ 1.75
SDCBP-201ENST00000260130 ARHGEF40Q8TER5 1519 aa25.98■■□□□ 1.75
SDCBP-201ENST00000260130 CAMSAP2Q08AD1 1489 aa25.97■■□□□ 1.75
SDCBP-201ENST00000260130 MBD5Q9P267 1494 aa25.96■■□□□ 1.75
SDCBP-201ENST00000260130 MLH3Q9UHC1 1453 aa25.96■■□□□ 1.75
SDCBP-201ENST00000260130 SPAG9O60271 1321 aaKnown RBP25.94■■□□□ 1.74
SDCBP-201ENST00000260130 HECW2Q9P2P5 1572 aa25.93■■□□□ 1.74
SDCBP-201ENST00000260130 RSPH4AQ5TD94 716 aa25.93■■□□□ 1.74
SDCBP-201ENST00000260130 PPARGC1BQ86YN6 1023 aaKnown RBP25.92■■□□□ 1.74
SDCBP-201ENST00000260130 KDM4FA0A1W2PPD8 638 aa25.91■■□□□ 1.74
SDCBP-201ENST00000260130 ATP10AO60312 1499 aa25.91■■□□□ 1.74
SDCBP-201ENST00000260130 ARID4BQ4LE39 1312 aaPredicted RBP25.9■■□□□ 1.74
SDCBP-201ENST00000260130 FGD6Q6ZV73 1430 aa25.88■■□□□ 1.73
SDCBP-201ENST00000260130 CCDC141Q6ZP82 1450 aa25.87■■□□□ 1.73
SDCBP-201ENST00000260130 C9orf84Q5VXU9 1444 aa25.86■■□□□ 1.73
SDCBP-201ENST00000260130 KIDINS220Q9ULH0 1771 aa25.85■■□□□ 1.73
SDCBP-201ENST00000260130 DIP2CQ9Y2E4 1556 aa25.84■■□□□ 1.73
SDCBP-201ENST00000260130 ARHGEF5Q12774 1597 aa25.84■■□□□ 1.73
SDCBP-201ENST00000260130 TSPY4P0CV99 314 aa25.83■■□□□ 1.73
SDCBP-201ENST00000260130 TSPY10P0CW01 314 aa25.83■■□□□ 1.73
SDCBP-201ENST00000260130 PTPN23Q9H3S7 1636 aa25.83■■□□□ 1.73
SDCBP-201ENST00000260130 ATP7AQ04656 1500 aa25.83■■□□□ 1.73
SDCBP-201ENST00000260130 ABCA6Q8N139 1617 aa25.83■■□□□ 1.72
SDCBP-201ENST00000260130 RTEL1-TNFRSF6BF6WH68 1400 aa25.82■■□□□ 1.72
SDCBP-201ENST00000260130 TCOF1Q13428 1488 aaKnown RBP25.81■■□□□ 1.72
SDCBP-201ENST00000260130 INO80Q9ULG1 1556 aaPredicted RBP25.81■■□□□ 1.72
SDCBP-201ENST00000260130 AEBP2Q6ZN18 517 aaPredicted RBP25.78■■□□□ 1.72
SDCBP-201ENST00000260130 REREQ9P2R6 1566 aa25.77■■□□□ 1.72
SDCBP-201ENST00000260130 SIGLEC1Q9BZZ2 1709 aa25.77■■□□□ 1.72
SDCBP-201ENST00000260130 FAM50AQ14320 339 aaKnown RBP25.75■■□□□ 1.71
SDCBP-201ENST00000260130 MLECQ14165 292 aa25.74■■□□□ 1.71
SDCBP-201ENST00000260130 BCORL1Q5H9F3 1711 aa25.74■■□□□ 1.71
SDCBP-201ENST00000260130 ABCC5O15440 1437 aa25.73■■□□□ 1.71
SDCBP-201ENST00000260130 A2MP01023 1474 aa25.72■■□□□ 1.71
SDCBP-201ENST00000260130 AGLP35573 1532 aa25.71■■□□□ 1.71
SDCBP-201ENST00000260130 DAPK1P53355 1430 aa25.7■■□□□ 1.7
SDCBP-201ENST00000260130 ADAMTSL3P82987 1691 aa25.7■■□□□ 1.7
SDCBP-201ENST00000260130 MAST1Q9Y2H9 1570 aa25.69■■□□□ 1.7
SDCBP-201ENST00000260130 DHX29Q7Z478 1369 aaKnown RBP25.68■■□□□ 1.7
SDCBP-201ENST00000260130 DNMT1P26358 1616 aaKnown RBP25.67■■□□□ 1.7
SDCBP-201ENST00000260130 ADGBQ8N7X0 1667 aa25.67■■□□□ 1.7
SDCBP-201ENST00000260130 SHANK2Q9UPX8 1470 aa25.66■■□□□ 1.7
SDCBP-201ENST00000260130 PLXNC1O60486 1568 aa25.65■■□□□ 1.7
SDCBP-201ENST00000260130 MADDQ8WXG6 1647 aa25.63■■□□□ 1.69
SDCBP-201ENST00000260130 CHIC2Q9UKJ5 165 aa25.62■■□□□ 1.69
SDCBP-201ENST00000260130 CROCC2H7BZ55 1655 aa25.61■■□□□ 1.69
SDCBP-201ENST00000260130 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.61■■□□□ 1.69
SDCBP-201ENST00000260130 PTPRMP28827 1452 aa25.59■■□□□ 1.69
SDCBP-201ENST00000260130 RRP7BPQ9NSQ0 103 aa25.59■■□□□ 1.69
SDCBP-201ENST00000260130 RRBP1Q9P2E9 1410 aaKnown RBP25.58■■□□□ 1.69
SDCBP-201ENST00000260130 KIF3BO15066 747 aa25.58■■□□□ 1.68
SDCBP-201ENST00000260130 GGT6Q6P531 493 aa25.57■■□□□ 1.68
SDCBP-201ENST00000260130 ANKRD30AQ9BXX3 1397 aa25.57■■□□□ 1.68
SDCBP-201ENST00000260130 KIF15Q9NS87 1388 aa25.56■■□□□ 1.68
SDCBP-201ENST00000260130 ESF1Q9H501 851 aaKnown RBP25.56■■□□□ 1.68
SDCBP-201ENST00000260130 NCOA1Q15788 1441 aa25.54■■□□□ 1.68
SDCBP-201ENST00000260130 RIMS1Q86UR5 1692 aaKnown RBP25.54■■□□□ 1.68
SDCBP-201ENST00000260130 FER1L4A9Z1Z3 1794 aa25.53■■□□□ 1.68
SDCBP-201ENST00000260130 DUOX2Q9NRD8 1548 aa25.53■■□□□ 1.68
SDCBP-201ENST00000260130 ITGAEP38570 1179 aa25.53■■□□□ 1.68
SDCBP-201ENST00000260130 PTPRKQ15262 1439 aa25.53■■□□□ 1.68
SDCBP-201ENST00000260130 ADGRL2O95490 1459 aa25.52■■□□□ 1.68
SDCBP-201ENST00000260130 PPP6R1Q9UPN7 881 aa25.52■■□□□ 1.68
SDCBP-201ENST00000260130 PLPPR3Q6T4P5 718 aa25.49■■□□□ 1.67
SDCBP-201ENST00000260130 CNTLNQ9NXG0 1405 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms