RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 ISY1Q9ULR0 285 aaKnown RBP23.94■■□□□ 1.42
SMARCC1-201ENST00000254480 RTF1Q92541 710 aaKnown RBP23.93■■□□□ 1.42
SMARCC1-201ENST00000254480 PNNQ9H307 717 aaKnown RBP23.92■■□□□ 1.42
SMARCC1-201ENST00000254480 FHAD1B1AJZ9 1412 aa23.91■■□□□ 1.42
SMARCC1-201ENST00000254480 NCBP3Q53F19 620 aaKnown RBP23.91■■□□□ 1.42
SMARCC1-201ENST00000254480 U2AF1L5P0DN76 240 aaPredicted RBP23.89■■□□□ 1.41
SMARCC1-201ENST00000254480 U2AF1Q01081 240 aaKnown RBP eCLIP23.89■■□□□ 1.41
SMARCC1-201ENST00000254480 AMER1Q5JTC6 1135 aaPredicted RBP23.88■■□□□ 1.41
SMARCC1-201ENST00000254480 MS4A1P11836 297 aa23.88■■□□□ 1.41
SMARCC1-201ENST00000254480 HSCBQ8IWL3 235 aa23.87■■□□□ 1.41
SMARCC1-201ENST00000254480 NACADO15069 1562 aa23.87■■□□□ 1.41
SMARCC1-201ENST00000254480 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
SMARCC1-201ENST00000254480 CSB-PGBD3P0DP91 1061 aa23.86■■□□□ 1.41
SMARCC1-201ENST00000254480 CHMP4BQ9H444 224 aaKnown RBP23.85■■□□□ 1.41
SMARCC1-201ENST00000254480 SETD5Q9C0A6 1442 aa23.85■■□□□ 1.41
SMARCC1-201ENST00000254480 GOLGA6L4A6NEF3 574 aa23.85■■□□□ 1.41
SMARCC1-201ENST00000254480 NUTM2FA1L443 756 aa23.85■■□□□ 1.41
SMARCC1-201ENST00000254480 HDGFP51858 240 aaKnown RBP23.84■■□□□ 1.41
SMARCC1-201ENST00000254480 CLSTN1O94985 981 aa23.84■■□□□ 1.41
SMARCC1-201ENST00000254480 HDGFL2Q7Z4V5 671 aaPredicted RBP23.83■■□□□ 1.41
SMARCC1-201ENST00000254480 ROCK2O75116 1388 aaKnown RBP23.83■■□□□ 1.41
SMARCC1-201ENST00000254480 TDRD9Q8NDG6 1382 aaKnown RBP23.82■■□□□ 1.4
SMARCC1-201ENST00000254480 ARHGAP35Q9NRY4 1499 aa23.82■■□□□ 1.4
SMARCC1-201ENST00000254480 ITPRIPQ8IWB1 547 aa23.81■■□□□ 1.4
SMARCC1-201ENST00000254480 MPHOSPH9Q99550 1183 aa23.8■■□□□ 1.4
SMARCC1-201ENST00000254480 CCDC146Q8IYE0 955 aa23.8■■□□□ 1.4
SMARCC1-201ENST00000254480 KTN1Q86UP2 1357 aaKnown RBP23.8■■□□□ 1.4
SMARCC1-201ENST00000254480 NUP155O75694 1391 aa23.79■■□□□ 1.4
SMARCC1-201ENST00000254480 HNRNPMP52272 730 aaKnown RBP eCLIP23.79■■□□□ 1.45e-7■■■■□ 24.8
SMARCC1-201ENST00000254480 BAZ1AQ9NRL2 1556 aaPredicted RBP23.79■■□□□ 1.4
SMARCC1-201ENST00000254480 ERICH6BQ5W0A0 696 aa23.77■■□□□ 1.4
SMARCC1-201ENST00000254480 KIF3BO15066 747 aa23.76■■□□□ 1.39
SMARCC1-201ENST00000254480 CCDC9Q9Y3X0 531 aaKnown RBP23.74■■□□□ 1.39
SMARCC1-201ENST00000254480 CLUAP1Q96AJ1 413 aa23.74■■□□□ 1.39
SMARCC1-201ENST00000254480 RAB3GAP2Q9H2M9 1393 aa23.73■■□□□ 1.39
SMARCC1-201ENST00000254480 MCCP23508 829 aa23.73■■□□□ 1.39
SMARCC1-201ENST00000254480 GZF1Q9H116 711 aaPredicted RBP23.73■■□□□ 1.39
SMARCC1-201ENST00000254480 SLKQ9H2G2 1235 aaPredicted RBP23.73■■□□□ 1.39
SMARCC1-201ENST00000254480 RCAN3Q9UKA8 241 aa23.73■■□□□ 1.39
SMARCC1-201ENST00000254480 LTV1Q96GA3 475 aaPredicted RBP23.72■■□□□ 1.39
SMARCC1-201ENST00000254480 CHMP3Q9Y3E7 222 aa23.72■■□□□ 1.39
SMARCC1-201ENST00000254480 DRC7Q8IY82 874 aa23.71■■□□□ 1.39
SMARCC1-201ENST00000254480 RBM19Q9Y4C8 960 aaKnown RBP23.7■■□□□ 1.39
SMARCC1-201ENST00000254480 GNL2Q13823 731 aaKnown RBP23.7■■□□□ 1.38
SMARCC1-201ENST00000254480 GOLGA6L6A8MZA4 724 aa23.69■■□□□ 1.38
SMARCC1-201ENST00000254480 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.69■■□□□ 1.381e-6■■■■□ 20.4
SMARCC1-201ENST00000254480 CCER2I3L3R5 266 aa23.68■■□□□ 1.38
SMARCC1-201ENST00000254480 SLC4A10Q6U841 1118 aa23.68■■□□□ 1.38
SMARCC1-201ENST00000254480 CCDC88BA6NC98 1476 aa23.67■■□□□ 1.38
SMARCC1-201ENST00000254480 VPS8Q8N3P4 1428 aa23.67■■□□□ 1.38
SMARCC1-201ENST00000254480 KIAA1211Q6ZU35 1233 aa23.66■■□□□ 1.38
SMARCC1-201ENST00000254480 IPO8O15397 1037 aaKnown RBP23.66■■□□□ 1.38
SMARCC1-201ENST00000254480 NOL8Q76FK4 1167 aaKnown RBP23.65■■□□□ 1.38
SMARCC1-201ENST00000254480 EFCAB2Q5VUJ9 269 aa23.65■■□□□ 1.38
SMARCC1-201ENST00000254480 FOXD4L1Q9NU39 408 aa23.64■■□□□ 1.38
SMARCC1-201ENST00000254480 MFAP1P55081 439 aaKnown RBP23.64■■□□□ 1.37
SMARCC1-201ENST00000254480 SMC4Q9NTJ3 1288 aa23.63■■□□□ 1.37
SMARCC1-201ENST00000254480 L3MBTL2Q969R5 705 aa23.63■■□□□ 1.37
SMARCC1-201ENST00000254480 CARMIL2Q6F5E8 1435 aa23.63■■□□□ 1.37
SMARCC1-201ENST00000254480 RRP7AQ9Y3A4 280 aaKnown RBP23.63■■□□□ 1.37
SMARCC1-201ENST00000254480 DEKP35659 375 aaKnown RBP23.62■■□□□ 1.37
SMARCC1-201ENST00000254480 TRAK1Q9UPV9 953 aa23.61■■□□□ 1.37
SMARCC1-201ENST00000254480 ARID3AQ99856 593 aa23.61■■□□□ 1.37
SMARCC1-201ENST00000254480 TRIM6-TRIM34B2RNG4 842 aa23.6■■□□□ 1.37
SMARCC1-201ENST00000254480 NGDNQ8NEJ9 315 aaKnown RBP23.6■■□□□ 1.37
SMARCC1-201ENST00000254480 MROH2BQ7Z745 1585 aa23.59■■□□□ 1.37
SMARCC1-201ENST00000254480 TIMELESSQ9UNS1 1208 aa23.58■■□□□ 1.37
SMARCC1-201ENST00000254480 GORABQ5T7V8 394 aa23.58■■□□□ 1.37
SMARCC1-201ENST00000254480 MSNP26038 577 aaKnown RBP23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 WASHC2CQ9Y4E1 1318 aa23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 NRDCO43847 1150 aa23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 RWDD1Q9H446 243 aaPredicted RBP23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 ANKRD30AQ9BXX3 1397 aa23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 STK31Q9BXU1 1019 aa23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 FHOD3Q2V2M9 1422 aa23.57■■□□□ 1.36
SMARCC1-201ENST00000254480 RALBP1Q15311 655 aa23.55■■□□□ 1.36
SMARCC1-201ENST00000254480 ELL2O00472 640 aaPredicted RBP23.55■■□□□ 1.36
SMARCC1-201ENST00000254480 TAF7LQ5H9L4 462 aa23.54■■□□□ 1.36
SMARCC1-201ENST00000254480 AMPHP49418 695 aa23.53■■□□□ 1.36
SMARCC1-201ENST00000254480 SPAG9O60271 1321 aaKnown RBP23.53■■□□□ 1.36
SMARCC1-201ENST00000254480 BCL2L13Q9BXK5 485 aa23.52■■□□□ 1.36
SMARCC1-201ENST00000254480 FOXD4L5Q5VV16 416 aaPredicted RBP23.51■■□□□ 1.35
SMARCC1-201ENST00000254480 FOXD4L4Q8WXT5 416 aaPredicted RBP23.51■■□□□ 1.35
SMARCC1-201ENST00000254480 HSP90B1P14625 803 aaKnown RBP23.51■■□□□ 1.35
SMARCC1-201ENST00000254480 CALD1Q05682 793 aaKnown RBP23.5■■□□□ 1.35
SMARCC1-201ENST00000254480 CHAF1AQ13111 956 aaPredicted RBP23.5■■□□□ 1.35
SMARCC1-201ENST00000254480 TERF2IPQ9NYB0 399 aa23.49■■□□□ 1.35
SMARCC1-201ENST00000254480 EID1Q9Y6B2 187 aa23.47■■□□□ 1.35
SMARCC1-201ENST00000254480 FMN1Q68DA7 1419 aa23.45■■□□□ 1.35
SMARCC1-201ENST00000254480 PDE4CQ08493 712 aa23.45■■□□□ 1.35
SMARCC1-201ENST00000254480 PLIN1O60240 522 aa23.45■■□□□ 1.34
SMARCC1-201ENST00000254480 PDS5BQ9NTI5 1447 aa23.45■■□□□ 1.34
SMARCC1-201ENST00000254480 L1TD1Q5T7N2 865 aaKnown RBP23.45■■□□□ 1.34
SMARCC1-201ENST00000254480 EIF3AQ14152 1382 aaKnown RBP23.44■■□□□ 1.34
SMARCC1-201ENST00000254480 ST20-MTHFSA0A0A6YYL1 179 aa23.44■■□□□ 1.34
SMARCC1-201ENST00000254480 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.43■■□□□ 1.34
SMARCC1-201ENST00000254480 CENPJQ9HC77 1338 aaPredicted RBP23.43■■□□□ 1.34
SMARCC1-201ENST00000254480 TOMM22Q9NS69 142 aa23.43■■□□□ 1.34
SMARCC1-201ENST00000254480 CREBRFQ8IUR6 639 aa23.42■■□□□ 1.34
SMARCC1-201ENST00000254480 GBP4Q96PP9 640 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms