RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 PHLDB1Q86UU1 1377 aa17.98■□□□□ 0.47
SF3B6-201ENST00000233468 NEO1Q92859 1461 aa17.98■□□□□ 0.47
SF3B6-201ENST00000233468 BCORL1Q5H9F3 1711 aa17.94■□□□□ 0.46
SF3B6-201ENST00000233468 PTPRMP28827 1452 aa17.94■□□□□ 0.46
SF3B6-201ENST00000233468 RICTORQ6R327 1708 aa17.93■□□□□ 0.46
SF3B6-201ENST00000233468 CASKIN1Q8WXD9 1431 aa17.93■□□□□ 0.46
SF3B6-201ENST00000233468 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.93■□□□□ 0.462e-18■■□□□ 12.1
SF3B6-201ENST00000233468 TTC37Q6PGP7 1564 aa17.91■□□□□ 0.46
SF3B6-201ENST00000233468 MADDQ8WXG6 1647 aa17.91■□□□□ 0.46
SF3B6-201ENST00000233468 ARID4BQ4LE39 1312 aaPredicted RBP17.91■□□□□ 0.46
SF3B6-201ENST00000233468 HECW1Q76N89 1606 aa17.9■□□□□ 0.46
SF3B6-201ENST00000233468 CDK13Q14004 1512 aaKnown RBP17.9■□□□□ 0.46
SF3B6-201ENST00000233468 AKNAQ7Z591 1439 aa17.89■□□□□ 0.46
SF3B6-201ENST00000233468 SIGLEC1Q9BZZ2 1709 aa17.89■□□□□ 0.45
SF3B6-201ENST00000233468 FANCAO15360 1455 aa17.88■□□□□ 0.45
SF3B6-201ENST00000233468 DENND4BO75064 1496 aaPredicted RBP17.88■□□□□ 0.45
SF3B6-201ENST00000233468 CCDC18Q5T9S5 1454 aa17.88■□□□□ 0.45
SF3B6-201ENST00000233468 FYCO1Q9BQS8 1478 aa17.88■□□□□ 0.45
SF3B6-201ENST00000233468 ARHGEF40Q8TER5 1519 aa17.86■□□□□ 0.45
SF3B6-201ENST00000233468 RIMS1Q86UR5 1692 aaKnown RBP17.85■□□□□ 0.45
SF3B6-201ENST00000233468 CFAP74Q9C0B2 1584 aa17.83■□□□□ 0.45
SF3B6-201ENST00000233468 YEATS2Q9ULM3 1422 aa17.82■□□□□ 0.44
SF3B6-201ENST00000233468 PCF11O94913 1555 aaKnown RBP17.8■□□□□ 0.44
SF3B6-201ENST00000233468 ZMYM4Q5VZL5 1548 aa17.79■□□□□ 0.44
SF3B6-201ENST00000233468 VPS8Q8N3P4 1428 aa17.79■□□□□ 0.44
SF3B6-201ENST00000233468 LRRIQ1Q96JM4 1722 aa17.78■□□□□ 0.44
SF3B6-201ENST00000233468 ZFYVE16Q7Z3T8 1539 aa17.78■□□□□ 0.44
SF3B6-201ENST00000233468 LMTK3Q96Q04 1460 aa17.78■□□□□ 0.44
SF3B6-201ENST00000233468 TROQ12816 1431 aaPredicted RBP17.78■□□□□ 0.44
SF3B6-201ENST00000233468 PLCH2O75038 1416 aa17.77■□□□□ 0.44
SF3B6-201ENST00000233468 SCAPERQ9BY12 1400 aa17.77■□□□□ 0.44
SF3B6-201ENST00000233468 KIF14Q15058 1648 aa17.76■□□□□ 0.43
SF3B6-201ENST00000233468 MYO5CQ9NQX4 1742 aa17.76■□□□□ 0.43
SF3B6-201ENST00000233468 MLECQ14165 292 aa17.76■□□□□ 0.43
SF3B6-201ENST00000233468 APLP2Q06481 763 aa17.75■□□□□ 0.43
SF3B6-201ENST00000233468 HSPA2P54652 639 aa17.74■□□□□ 0.43
SF3B6-201ENST00000233468 MTUS2Q5JR59 1369 aa17.73■□□□□ 0.43
SF3B6-201ENST00000233468 FER1L4A9Z1Z3 1794 aa17.73■□□□□ 0.43
SF3B6-201ENST00000233468 POGZQ7Z3K3 1410 aa17.72■□□□□ 0.43
SF3B6-201ENST00000233468 FBXO41Q8TF61 875 aa17.71■□□□□ 0.43
SF3B6-201ENST00000233468 MAGI2Q86UL8 1455 aa17.7■□□□□ 0.42
SF3B6-201ENST00000233468 EFCAB2Q5VUJ9 269 aa17.69■□□□□ 0.42
SF3B6-201ENST00000233468 CDC42BPBQ9Y5S2 1711 aa17.67■□□□□ 0.42
SF3B6-201ENST00000233468 ATP10AO60312 1499 aa17.67■□□□□ 0.42
SF3B6-201ENST00000233468 AFAP1Q8N556 730 aa17.66■□□□□ 0.42
SF3B6-201ENST00000233468 ARHGAP5Q13017 1502 aa17.65■□□□□ 0.42
SF3B6-201ENST00000233468 CEBPAP49715 358 aaPredicted RBP17.64■□□□□ 0.41
SF3B6-201ENST00000233468 C9orf84Q5VXU9 1444 aa17.64■□□□□ 0.41
SF3B6-201ENST00000233468 ARHGEF12Q9NZN5 1544 aa17.63■□□□□ 0.41
SF3B6-201ENST00000233468 MAP3K1Q13233 1512 aa17.62■□□□□ 0.41
SF3B6-201ENST00000233468 CCNB3Q8WWL7 1395 aa17.61■□□□□ 0.41
SF3B6-201ENST00000233468 ZNF518AQ6AHZ1 1483 aa17.61■□□□□ 0.41
SF3B6-201ENST00000233468 EHBP1L1Q8N3D4 1523 aa17.61■□□□□ 0.41
SF3B6-201ENST00000233468 KDM5CP41229 1560 aa17.61■□□□□ 0.41
SF3B6-201ENST00000233468 DIP2CQ9Y2E4 1556 aa17.59■□□□□ 0.41
SF3B6-201ENST00000233468 MYT1LQ9UL68 1186 aa17.59■□□□□ 0.41
SF3B6-201ENST00000233468 ABCA6Q8N139 1617 aa17.58■□□□□ 0.41
SF3B6-201ENST00000233468 TIAM1Q13009 1591 aa17.58■□□□□ 0.41
SF3B6-201ENST00000233468 PREX2Q70Z35 1606 aa17.58■□□□□ 0.4
SF3B6-201ENST00000233468 CFDP1Q9UEE9 299 aaPredicted RBP17.57■□□□□ 0.4
SF3B6-201ENST00000233468 CDC42BPAQ5VT25 1732 aa17.57■□□□□ 0.4
SF3B6-201ENST00000233468 PREX1Q8TCU6 1659 aa17.57■□□□□ 0.4
SF3B6-201ENST00000233468 LRRC9Q6ZRR7 1453 aa17.56■□□□□ 0.4
SF3B6-201ENST00000233468 TRAPPC8Q9Y2L5 1435 aa17.56■□□□□ 0.4
SF3B6-201ENST00000233468 ITSN2Q9NZM3 1697 aa17.55■□□□□ 0.4
SF3B6-201ENST00000233468 STRCQ7RTU9 1775 aa17.54■□□□□ 0.4
SF3B6-201ENST00000233468 ABCC1P33527 1531 aa17.53■□□□□ 0.4
SF3B6-201ENST00000233468 KANK4Q5T7N3 995 aaPredicted RBP17.53■□□□□ 0.4
SF3B6-201ENST00000233468 ZNF777Q9ULD5 760 aaPredicted RBP17.53■□□□□ 0.4
SF3B6-201ENST00000233468 SETD1BQ9UPS6 1966 aaKnown RBP17.53■□□□□ 0.4
SF3B6-201ENST00000233468 KIDINS220Q9ULH0 1771 aa17.53■□□□□ 0.4
SF3B6-201ENST00000233468 GPATCH8Q9UKJ3 1502 aaKnown RBP17.52■□□□□ 0.4
SF3B6-201ENST00000233468 C3P01024 1663 aa17.52■□□□□ 0.4
SF3B6-201ENST00000233468 NCOA2Q15596 1464 aa17.51■□□□□ 0.39
SF3B6-201ENST00000233468 MLH3Q9UHC1 1453 aa17.51■□□□□ 0.39
SF3B6-201ENST00000233468 CERKQ8TCT0 537 aa17.51■□□□□ 0.39
SF3B6-201ENST00000233468 REREQ9P2R6 1566 aa17.5■□□□□ 0.39
SF3B6-201ENST00000233468 PLEKHH2Q8IVE3 1493 aa17.49■□□□□ 0.39
SF3B6-201ENST00000233468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.48■□□□□ 0.391e-12■■□□□ 12.9
SF3B6-201ENST00000233468 SUPT6HQ7KZ85 1726 aaKnown RBP17.47■□□□□ 0.39
SF3B6-201ENST00000233468 SAMD9LQ8IVG5 1584 aa17.47■□□□□ 0.39
SF3B6-201ENST00000233468 AGLP35573 1532 aa17.46■□□□□ 0.39
SF3B6-201ENST00000233468 UHRF1BP1Q6BDS2 1440 aa17.46■□□□□ 0.39
SF3B6-201ENST00000233468 KIAA1107Q9UPP5 1409 aa17.46■□□□□ 0.39
SF3B6-201ENST00000233468 SYCP2Q9BX26 1530 aa17.44■□□□□ 0.38
SF3B6-201ENST00000233468 HNRNPMP52272 730 aaKnown RBP eCLIP17.44■□□□□ 0.38
SF3B6-201ENST00000233468 RSPH4AQ5TD94 716 aa17.44■□□□□ 0.38
SF3B6-201ENST00000233468 MIA2Q96PC5 1412 aa17.41■□□□□ 0.38
SF3B6-201ENST00000233468 MYOM3Q5VTT5 1437 aa17.4■□□□□ 0.38
SF3B6-201ENST00000233468 ESF1Q9H501 851 aaKnown RBP17.4■□□□□ 0.38
SF3B6-201ENST00000233468 RNF39Q9H2S5 420 aa17.38■□□□□ 0.37
SF3B6-201ENST00000233468 SPAG9O60271 1321 aaKnown RBP17.38■□□□□ 0.37
SF3B6-201ENST00000233468 ZNF644Q9H582 1327 aaPredicted RBP17.38■□□□□ 0.37
SF3B6-201ENST00000233468 TSPY4P0CV99 314 aa17.36■□□□□ 0.37
SF3B6-201ENST00000233468 TSPY10P0CW01 314 aa17.36■□□□□ 0.37
SF3B6-201ENST00000233468 SLC4A1APQ9BWU0 796 aaKnown RBP17.36■□□□□ 0.37
SF3B6-201ENST00000233468 ATP7AQ04656 1500 aa17.36■□□□□ 0.37
SF3B6-201ENST00000233468 INO80Q9ULG1 1556 aaPredicted RBP17.35■□□□□ 0.37
SF3B6-201ENST00000233468 MROH2AA6NES4 1674 aa17.35■□□□□ 0.37
SF3B6-201ENST00000233468 CLTCQ00610 1675 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms