RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 ARID3CA6NKF2 412 aa18.92■□□□□ 0.62
GABPB1-201ENST00000220429 NBR1Q14596 966 aa18.92■□□□□ 0.62
GABPB1-201ENST00000220429 NAIPQ13075 1403 aa18.92■□□□□ 0.62
GABPB1-201ENST00000220429 CDK11AQ9UQ88 783 aaPredicted RBP18.91■□□□□ 0.62
GABPB1-201ENST00000220429 RAPGEF6Q8TEU7 1601 aa18.9■□□□□ 0.62
GABPB1-201ENST00000220429 CHMP7Q8WUX9 453 aaPredicted RBP18.9■□□□□ 0.62
GABPB1-201ENST00000220429 NUP153P49790 1475 aaKnown RBP18.89■□□□□ 0.61
GABPB1-201ENST00000220429 PODXL2Q9NZ53 605 aa18.88■□□□□ 0.61
GABPB1-201ENST00000220429 UACAQ9BZF9 1416 aa18.88■□□□□ 0.61
GABPB1-201ENST00000220429 MIA2Q96PC5 1412 aa18.86■□□□□ 0.61
GABPB1-201ENST00000220429 FBLN2P98095 1184 aa18.84■□□□□ 0.61
GABPB1-201ENST00000220429 KCNH8Q96L42 1107 aa18.84■□□□□ 0.61
GABPB1-201ENST00000220429 TIMELESSQ9UNS1 1208 aa18.84■□□□□ 0.61
GABPB1-201ENST00000220429 GCC2Q8IWJ2 1684 aa18.84■□□□□ 0.61
GABPB1-201ENST00000220429 NUP160Q12769 1436 aa18.84■□□□□ 0.61
GABPB1-201ENST00000220429 NOP58Q9Y2X3 529 aaKnown RBP18.81■□□□□ 0.6
GABPB1-201ENST00000220429 CHIC2Q9UKJ5 165 aa18.8■□□□□ 0.6
GABPB1-201ENST00000220429 RRP7BPQ9NSQ0 103 aa18.8■□□□□ 0.6
GABPB1-201ENST00000220429 AKNAQ7Z591 1439 aa18.79■□□□□ 0.6
GABPB1-201ENST00000220429 PLB1Q6P1J6 1458 aa18.79■□□□□ 0.6
GABPB1-201ENST00000220429 RTL5Q5HYW3 569 aaPredicted RBP18.78■□□□□ 0.6
GABPB1-201ENST00000220429 KDM6BO15054 1643 aa18.77■□□□□ 0.6
GABPB1-201ENST00000220429 PPP1R15AO75807 674 aaPredicted RBP18.77■□□□□ 0.6
GABPB1-201ENST00000220429 JPH4Q96JJ6 628 aa18.77■□□□□ 0.6
GABPB1-201ENST00000220429 CARMIL2Q6F5E8 1435 aa18.76■□□□□ 0.59
GABPB1-201ENST00000220429 PRG4Q92954 1404 aaPredicted RBP18.74■□□□□ 0.59
GABPB1-201ENST00000220429 TROQ12816 1431 aaPredicted RBP18.73■□□□□ 0.59
GABPB1-201ENST00000220429 DNMT1P26358 1616 aaKnown RBP18.73■□□□□ 0.59
GABPB1-201ENST00000220429 DAPK1P53355 1430 aa18.72■□□□□ 0.59
GABPB1-201ENST00000220429 TONSLQ96HA7 1378 aa18.72■□□□□ 0.59
GABPB1-201ENST00000220429 DENND4BO75064 1496 aaPredicted RBP18.71■□□□□ 0.59
GABPB1-201ENST00000220429 PAK3O75914 559 aaPredicted RBP18.71■□□□□ 0.59
GABPB1-201ENST00000220429 ZNF644Q9H582 1327 aaPredicted RBP18.7■□□□□ 0.58
GABPB1-201ENST00000220429 ADCY10Q96PN6 1610 aa18.7■□□□□ 0.58
GABPB1-201ENST00000220429 ABCC5O15440 1437 aa18.7■□□□□ 0.58
GABPB1-201ENST00000220429 KIF14Q15058 1648 aa18.69■□□□□ 0.58
GABPB1-201ENST00000220429 ITSN2Q9NZM3 1697 aa18.68■□□□□ 0.58
GABPB1-201ENST00000220429 ROCK1Q13464 1354 aa18.67■□□□□ 0.58
GABPB1-201ENST00000220429 ABCA8O94911 1581 aa18.67■□□□□ 0.58
GABPB1-201ENST00000220429 KDM5BQ9UGL1 1544 aa18.66■□□□□ 0.58
GABPB1-201ENST00000220429 TRIM52Q96A61 297 aa18.66■□□□□ 0.58
GABPB1-201ENST00000220429 GPATCH8Q9UKJ3 1502 aaKnown RBP18.65■□□□□ 0.58
GABPB1-201ENST00000220429 CAMSAP2Q08AD1 1489 aa18.64■□□□□ 0.57
GABPB1-201ENST00000220429 C11orf95C9JLR9 678 aaPredicted RBP18.63■□□□□ 0.57
GABPB1-201ENST00000220429 GLIPR1L2Q4G1C9 344 aa18.62■□□□□ 0.57
GABPB1-201ENST00000220429 CHD1O14646 1710 aa18.62■□□□□ 0.57
GABPB1-201ENST00000220429 MPHOSPH9Q99550 1183 aa18.62■□□□□ 0.57
GABPB1-201ENST00000220429 CFDP1Q9UEE9 299 aaPredicted RBP18.61■□□□□ 0.57
GABPB1-201ENST00000220429 HIRIP3Q9BW71 556 aaPredicted RBP18.61■□□□□ 0.57
GABPB1-201ENST00000220429 ATP10BO94823 1461 aa18.6■□□□□ 0.57
GABPB1-201ENST00000220429 DDX10Q13206 875 aaKnown RBP18.59■□□□□ 0.57
GABPB1-201ENST00000220429 CDC42BPAQ5VT25 1732 aa18.59■□□□□ 0.57
GABPB1-201ENST00000220429 ADGBQ8N7X0 1667 aa18.58■□□□□ 0.57
GABPB1-201ENST00000220429 CROCC2H7BZ55 1655 aa18.58■□□□□ 0.56
GABPB1-201ENST00000220429 ZMYND15Q9H091 742 aa18.58■□□□□ 0.56
GABPB1-201ENST00000220429 WASHC2AQ641Q2 1341 aa18.56■□□□□ 0.56
GABPB1-201ENST00000220429 PLEKHD1A6NEE1 506 aa18.56■□□□□ 0.56
GABPB1-201ENST00000220429 ABCC10Q5T3U5 1492 aa18.56■□□□□ 0.56
GABPB1-201ENST00000220429 ZNF777Q9ULD5 760 aaPredicted RBP18.55■□□□□ 0.56
GABPB1-201ENST00000220429 FOXD1Q16676 465 aa18.54■□□□□ 0.56
GABPB1-201ENST00000220429 RSPH6AQ9H0K4 717 aa18.54■□□□□ 0.56
GABPB1-201ENST00000220429 NCOA1Q15788 1441 aa18.54■□□□□ 0.56
GABPB1-201ENST00000220429 PTPRGP23470 1445 aa18.53■□□□□ 0.56
GABPB1-201ENST00000220429 ADGRL2O95490 1459 aa18.52■□□□□ 0.56
GABPB1-201ENST00000220429 ANKRD30BQ9BXX2 1392 aa18.51■□□□□ 0.55
GABPB1-201ENST00000220429 SHROOM2Q13796 1616 aa18.51■□□□□ 0.55
GABPB1-201ENST00000220429 WASHC2CQ9Y4E1 1318 aa18.5■□□□□ 0.55
GABPB1-201ENST00000220429 VSIG10Q8N0Z9 540 aa18.5■□□□□ 0.55
GABPB1-201ENST00000220429 PZPP20742 1482 aa18.48■□□□□ 0.55
GABPB1-201ENST00000220429 IPO9Q96P70 1041 aaKnown RBP18.47■□□□□ 0.55
GABPB1-201ENST00000220429 SLC4A1APQ9BWU0 796 aaKnown RBP18.47■□□□□ 0.55
GABPB1-201ENST00000220429 RPRD2Q5VT52 1461 aaKnown RBP18.47■□□□□ 0.55
GABPB1-201ENST00000220429 IRX6P78412 446 aaPredicted RBP18.47■□□□□ 0.55
GABPB1-201ENST00000220429 L3MBTL2Q969R5 705 aa18.46■□□□□ 0.55
GABPB1-201ENST00000220429 ZBTB47Q9UFB7 747 aaPredicted RBP18.46■□□□□ 0.55
GABPB1-201ENST00000220429 BRPF3Q9ULD4 1205 aa18.45■□□□□ 0.54
GABPB1-201ENST00000220429 ANKRD30AQ9BXX3 1397 aa18.45■□□□□ 0.54
GABPB1-201ENST00000220429 PPP4R2Q9NY27 417 aa18.44■□□□□ 0.54
GABPB1-201ENST00000220429 SHANK2Q9UPX8 1470 aa18.44■□□□□ 0.54
GABPB1-201ENST00000220429 ERCC6L2Q5T890 1561 aa18.43■□□□□ 0.54
GABPB1-201ENST00000220429 TEX14Q8IWB6 1497 aa18.43■□□□□ 0.54
GABPB1-201ENST00000220429 CDC42BPBQ9Y5S2 1711 aa18.43■□□□□ 0.54
GABPB1-201ENST00000220429 ANP32AP39687 249 aaKnown RBP18.43■□□□□ 0.54
GABPB1-201ENST00000220429 C9orf84Q5VXU9 1444 aa18.41■□□□□ 0.54
GABPB1-201ENST00000220429 USP35Q9P2H5 1018 aa18.41■□□□□ 0.54
GABPB1-201ENST00000220429 ANKRD50Q9ULJ7 1429 aa18.41■□□□□ 0.54
GABPB1-201ENST00000220429 HSPA5P11021 654 aaKnown RBP18.4■□□□□ 0.54
GABPB1-201ENST00000220429 PREX2Q70Z35 1606 aa18.4■□□□□ 0.54
GABPB1-201ENST00000220429 ARHGEF5Q12774 1597 aa18.39■□□□□ 0.53
GABPB1-201ENST00000220429 CCER2I3L3R5 266 aa18.38■□□□□ 0.53
GABPB1-201ENST00000220429 SAMD9LQ8IVG5 1584 aa18.38■□□□□ 0.53
GABPB1-201ENST00000220429 MBD5Q9P267 1494 aa18.37■□□□□ 0.53
GABPB1-201ENST00000220429 KIAA1107Q9UPP5 1409 aa18.37■□□□□ 0.53
GABPB1-201ENST00000220429 ANP32CO43423 234 aa18.36■□□□□ 0.53
GABPB1-201ENST00000220429 HNRNPMP52272 730 aaKnown RBP eCLIP18.36■□□□□ 0.53
GABPB1-201ENST00000220429 NBPF8Q3BBV2 869 aa18.36■□□□□ 0.53
GABPB1-201ENST00000220429 ABCC2Q92887 1545 aa18.36■□□□□ 0.53
GABPB1-201ENST00000220429 EIF4G2P78344 907 aaKnown RBP eCLIP18.36■□□□□ 0.53
GABPB1-201ENST00000220429 TTC37Q6PGP7 1564 aa18.35■□□□□ 0.53
GABPB1-201ENST00000220429 TSPY4P0CV99 314 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms