RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	PDB1	P32473	366 aa	Known RBP	3.42	□□□□□ -1.86
PEX1	YKL197C	FMO1	P38866	432 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	HXT6	P39003	570 aa	Known RBP	3.42	□□□□□ -1.86
PEX1	YKL197C	HXT7	P39004	570 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	STT3	P39007	718 aa	Known RBP	3.42	□□□□□ -1.86
PEX1	YKL197C	ACA1	P39970	489 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	SCS2	P40075	244 aa	Known RBP	3.42	□□□□□ -1.86
PEX1	YKL197C	KHA1	P40309	873 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	BRO1	P48582	844 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	YKE2	P52553	114 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	EOS1	P53938	366 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	ALO1	P54783	526 aa	Known RBP	3.42	□□□□□ -1.86
PEX1	YKL197C	SNX41	Q04053	625 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	SEG1	Q04279	960 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	RQC1	Q05468	723 aa	Known RBP	3.42	□□□□□ -1.86
PEX1	YKL197C	YLR031W	Q07978	186 aa		3.42	□□□□□ -1.86
PEX1	YKL197C	PUT2	P07275	575 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	CHS1	P08004	1131 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	YGL041W-A	P0C5N3	154 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	PMR1	P13586	950 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SEC63	P14906	663 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	ARG1	P22768	420 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	RSA4	P25382	515 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	KIP1	P28742	1111 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	ADH5	P38113	351 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	URA8	P38627	578 aa	Predicted RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	SBE22	P38814	852 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	CCC2	P38995	1004 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	VAB2	P40003	282 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	RGI1	P40043	161 aa	Predicted RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	AVT6	P40074	448 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	ALG8	P40351	577 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	LSM1	P47017	172 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	NAS6	P50086	228 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	NUT1	P53114	1132 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SLI1	P53304	468 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	UFD2	P54860	961 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	MMT1	Q03218	510 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	YDR239C	Q03780	787 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	BNA7	Q04066	261 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	MSC3	Q05812	728 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	NGL1	Q08213	363 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	UIP4	Q08926	304 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	GLO4	Q12320	285 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	LDB17	Q12342	491 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SNU23	Q12368	194 aa	Predicted RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	NCB2	Q92317	146 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	ISN1	Q99312	450 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	GLT1	Q12680	2145 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	RPP1A	P05318	106 aa	Predicted RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	MATALPHA1	P0CY06	175 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	HMLALPHA1	P0CY07	175 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	APE1	P14904	514 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	NSP1	P14907	823 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	DBP5	P20449	482 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	PYC2	P32327	1180 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	PDR3	P33200	976 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	IRS4	P36115	615 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	YBR287W	P38355	427 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SLM1	P40485	686 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	CIN5	P40917	295 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	LIA1	P47120	325 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	NPA3	P47122	385 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	NBP35	P52920	328 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SWP1	Q02795	286 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	YMR155W	Q03795	547 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SPH1	Q06160	661 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SRO7	Q12038	1033 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	RPN6	Q12377	434 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	MDM20	Q12387	796 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	RVB2	Q12464	471 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	3.41	□□□□□ -1.86	not detected
PEX1	YKL197C	IFM1	P25038	676 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	CTR86	P25355	563 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	IMG1	P25626	169 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	CMK1	P27466	446 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	CYM1	P32898	989 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SRP101	P32916	621 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	MCX1	P38323	520 aa	Predicted RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	SUR2	P38992	349 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	GIP4	P39732	760 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	RSP5	P39940	809 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	ICP55	P40051	511 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	UFE1	P41834	346 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	TFG2	P41896	400 aa	Predicted RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	YNR065C	P53751	1116 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	NOG1	Q02892	647 aa	Known RBP	3.41	□□□□□ -1.86
PEX1	YKL197C	GCN5	Q03330	439 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	YAP6	Q03935	383 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	RAD30	Q04049	632 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	SFH1	Q06168	426 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	YLR177W	Q06251	628 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	RSB1	Q08417	382 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	THI72	Q08579	599 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	GRE1	Q08969	168 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	YDR215C	Q12240	137 aa		3.41	□□□□□ -1.86
PEX1	YKL197C	LEU4	P06208	619 aa	Known RBP	3.4	□□□□□ -1.86
PEX1	YKL197C	GCN3	P14741	305 aa		3.4	□□□□□ -1.86
PEX1	YKL197C	AAT2	P23542	418 aa	Known RBP	3.4	□□□□□ -1.86
PEX1	YKL197C	SWI4	P25302	1093 aa	Known RBP	3.4	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms