RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W HOS1Q12214 470 aa4.46□□□□□ -1.7
SSH4YKL124W YKR104WP0CE69 306 aa4.45□□□□□ -1.7
SSH4YKL124W SBP1P10080 294 aaKnown RBP4.45□□□□□ -1.7
SSH4YKL124W SRP101P32916 621 aa4.45□□□□□ -1.7
SSH4YKL124W DHR2P36009 735 aaPredicted RBP4.45□□□□□ -1.7
SSH4YKL124W TFA2P36145 328 aa4.45□□□□□ -1.7
SSH4YKL124W TAE1P38340 232 aa4.45□□□□□ -1.7
SSH4YKL124W YMR134WP40207 237 aa4.45□□□□□ -1.7
SSH4YKL124W TOK1P40310 691 aa4.45□□□□□ -1.7
SSH4YKL124W RGD2P43556 714 aa4.45□□□□□ -1.7
SSH4YKL124W AGX1P43567 385 aa4.45□□□□□ -1.7
SSH4YKL124W SUM1P46676 1062 aa4.45□□□□□ -1.7
SSH4YKL124W RPC17P47076 161 aa4.45□□□□□ -1.7
SSH4YKL124W COG1P53079 417 aa4.45□□□□□ -1.7
SSH4YKL124W SWC4P53201 476 aa4.45□□□□□ -1.7
SSH4YKL124W EFM6P53970 246 aa4.45□□□□□ -1.7
SSH4YKL124W RPL22BP56628 122 aaKnown RBP4.45□□□□□ -1.7
SSH4YKL124W TFB2Q02939 513 aa4.45□□□□□ -1.7
SSH4YKL124W HAS1Q03532 505 aaKnown RBP4.45□□□□□ -1.7
SSH4YKL124W HED1Q03937 162 aa4.45□□□□□ -1.7
SSH4YKL124W YMR114CQ04471 368 aaKnown RBP4.45□□□□□ -1.7
SSH4YKL124W TDA9Q04545 1251 aa4.45□□□□□ -1.7
SSH4YKL124W GSF2Q04697 403 aaKnown RBP4.45□□□□□ -1.7
SSH4YKL124W MCP2Q06567 569 aa4.45□□□□□ -1.7
SSH4YKL124W REX3Q12090 404 aa4.45□□□□□ -1.7
SSH4YKL124W NUM1Q00402 2748 aa4.45□□□□□ -1.7
SSH4YKL124W CDC4P07834 779 aa4.44□□□□□ -1.7
SSH4YKL124W MOD5P07884 428 aa4.44□□□□□ -1.7
SSH4YKL124W IMA3P0CW40 589 aa4.44□□□□□ -1.7
SSH4YKL124W IMA4P0CW41 589 aa4.44□□□□□ -1.7
SSH4YKL124W SPT15P13393 240 aaKnown RBP4.44□□□□□ -1.7
SSH4YKL124W UBA1P22515 1024 aaKnown RBP4.44□□□□□ -1.7
SSH4YKL124W YSP3P25036 478 aa4.44□□□□□ -1.7
SSH4YKL124W RBK1P25332 333 aa4.44□□□□□ -1.7
SSH4YKL124W SNT1P25357 1226 aa4.44□□□□□ -1.7
SSH4YKL124W DCC1P25559 380 aa4.44□□□□□ -1.7
SSH4YKL124W CIN8P27895 1000 aa4.44□□□□□ -1.7
SSH4YKL124W SFA1P32771 386 aa4.44□□□□□ -1.7
SSH4YKL124W CNS1P33313 385 aa4.44□□□□□ -1.7
SSH4YKL124W CTF13P35203 478 aa4.44□□□□□ -1.7
SSH4YKL124W SRP72P38688 640 aaKnown RBP4.44□□□□□ -1.7
SSH4YKL124W PEX18P38855 283 aa4.44□□□□□ -1.7
SSH4YKL124W ERV46P39727 415 aa4.44□□□□□ -1.7
SSH4YKL124W PCL7P40186 285 aa4.44□□□□□ -1.7
SSH4YKL124W JEM1P40358 645 aa4.44□□□□□ -1.7
SSH4YKL124W YFR018CP43599 363 aa4.44□□□□□ -1.7
SSH4YKL124W ALY2P47029 1046 aa4.44□□□□□ -1.7
SSH4YKL124W APT1P49435 187 aaKnown RBP4.44□□□□□ -1.7
SSH4YKL124W YGL108CP53139 140 aa4.44□□□□□ -1.7
SSH4YKL124W RIM8P53179 542 aa4.44□□□□□ -1.7
SSH4YKL124W MEP3P53390 489 aa4.44□□□□□ -1.7
SSH4YKL124W SNO2P53823 222 aa4.44□□□□□ -1.7
SSH4YKL124W FDC1Q03034 503 aa4.44□□□□□ -1.7
SSH4YKL124W SML1Q04964 104 aa4.44□□□□□ -1.7
SSH4YKL124W TDA5Q06417 326 aaKnown RBP4.44□□□□□ -1.7
SSH4YKL124W IMA2Q08295 589 aa4.44□□□□□ -1.7
SSH4YKL124W AIM41Q12032 185 aa4.44□□□□□ -1.7
SSH4YKL124W NFI1Q12216 726 aa4.44□□□□□ -1.7
SSH4YKL124W ACC1Q00955 2233 aaKnown RBP4.44□□□□□ -1.7
SSH4YKL124W PTP2P29461 750 aa4.43□□□□□ -1.7
SSH4YKL124W NDI1P32340 513 aa4.43□□□□□ -1.7
SSH4YKL124W RPC82P32349 654 aa4.43□□□□□ -1.7
SSH4YKL124W SFP1P32432 683 aa4.43□□□□□ -1.7
SSH4YKL124W GCD6P32501 712 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W PPQ1P32945 549 aa4.43□□□□□ -1.7
SSH4YKL124W IRS4P36115 615 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W IML3P38265 245 aa4.43□□□□□ -1.7
SSH4YKL124W MSG5P38590 489 aa4.43□□□□□ -1.7
SSH4YKL124W RRP3P38712 501 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W SWD1P39706 426 aa4.43□□□□□ -1.7
SSH4YKL124W DPH1P40487 425 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W ERR3P42222 437 aa4.43□□□□□ -1.7
SSH4YKL124W FET5P43561 622 aa4.43□□□□□ -1.7
SSH4YKL124W PMT3P47190 753 aa4.43□□□□□ -1.7
SSH4YKL124W TIM13P53299 105 aa4.43□□□□□ -1.7
SSH4YKL124W HST2P53686 357 aa4.43□□□□□ -1.7
SSH4YKL124W YDR132CQ03900 495 aa4.43□□□□□ -1.7
SSH4YKL124W CIA1Q05583 330 aa4.43□□□□□ -1.7
SSH4YKL124W ECI1Q05871 280 aa4.43□□□□□ -1.7
SSH4YKL124W YFT2Q06676 274 aa4.43□□□□□ -1.7
SSH4YKL124W ADY3Q07732 790 aa4.43□□□□□ -1.7
SSH4YKL124W ATG10Q07879 167 aa4.43□□□□□ -1.7
SSH4YKL124W THI73Q07904 523 aa4.43□□□□□ -1.7
SSH4YKL124W RTT10Q08924 1013 aa4.43□□□□□ -1.7
SSH4YKL124W VPS68Q12016 184 aa4.43□□□□□ -1.7
SSH4YKL124W SCM3Q12334 223 aa4.43□□□□□ -1.7
SSH4YKL124W MMP1Q12372 583 aa4.43□□□□□ -1.7
SSH4YKL124W ZRT2Q12436 422 aa4.43□□□□□ -1.7
SSH4YKL124W YLR149CQ99296 730 aa4.43□□□□□ -1.7
SSH4YKL124W PHO84P25297 587 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W PUF4P25339 888 aaKnown RBP RIP-Chip data4.43□□□□□ -1.7not detected
SSH4YKL124W SMI1P32566 505 aa4.43□□□□□ -1.7
SSH4YKL124W SPS19P32573 292 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W UTR2P32623 467 aa4.43□□□□□ -1.7
SSH4YKL124W IMP3P32899 183 aaPredicted RBP4.43□□□□□ -1.7
SSH4YKL124W CBF5P33322 483 aaKnown RBP RIP-Chip data4.43□□□□□ -1.7not detected
SSH4YKL124W PHO11P35842 467 aa4.43□□□□□ -1.7
SSH4YKL124W TEF4P36008 412 aaKnown RBP4.43□□□□□ -1.7
SSH4YKL124W PHO12P38693 467 aa4.43□□□□□ -1.7
SSH4YKL124W SCC4P40090 624 aa4.43□□□□□ -1.7
Retrieved 100 of 5,963 RNA–protein pairs in 26.3 ms