RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	10.64	□□□□□ -0.71	not detected
VPS60	YDR486C	UBP6	P43593	499 aa	Known RBP	10.64	□□□□□ -0.71
VPS60	YDR486C	MTO1	P53070	669 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	CLD1	P53264	445 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	10.64	□□□□□ -0.71	RIP-Chip
VPS60	YDR486C	TRM12	Q04235	462 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	SSL1	Q04673	461 aa	Predicted RBP	10.64	□□□□□ -0.71
VPS60	YDR486C	ALR1	Q08269	859 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	GTT2	Q12390	233 aa		10.64	□□□□□ -0.71
VPS60	YDR486C	PRP4	P20053	465 aa	Known RBP	10.63	□□□□□ -0.71
VPS60	YDR486C	TIP20	P33891	701 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	SKT5	P34226	696 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	CTP1	P38152	299 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	IML3	P38265	245 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	PPX1	P38698	397 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	ERP5	P38819	212 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	VMA13	P41807	478 aa	Known RBP	10.63	□□□□□ -0.71
VPS60	YDR486C	GAT1	P43574	510 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	FAA4	P47912	694 aa	Known RBP	10.63	□□□□□ -0.71
VPS60	YDR486C	TIS11	P47977	285 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	RNR4	P49723	345 aa	Known RBP	10.63	□□□□□ -0.71
VPS60	YDR486C	MRM2	P53123	320 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	SMA1	Q02651	245 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	YMR102C	Q03177	834 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	CLU1	Q03690	1277 aa	Known RBP	10.63	□□□□□ -0.71
VPS60	YDR486C	HDA3	Q06623	655 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	ATG10	Q07879	167 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	YOR012W	Q12351	137 aa		10.63	□□□□□ -0.71
VPS60	YDR486C	PHO5	P00635	467 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	SUC2	P00724	532 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	HEM2	P05373	342 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	CPA1	P07258	411 aa	Known RBP	10.62	□□□□□ -0.71
VPS60	YDR486C	RFA2	P26754	273 aa	Known RBP	10.62	□□□□□ -0.71
VPS60	YDR486C	CSE1	P33307	960 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	EAP1	P36041	632 aa	Known RBP	10.62	□□□□□ -0.71
VPS60	YDR486C	TAE1	P38340	232 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	CYC2	P38909	366 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	SHU2	P38957	223 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	COA1	P40452	197 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	NBP35	P52920	328 aa		10.62	□□□□□ -0.71
VPS60	YDR486C	LSM3	P57743	89 aa	Known RBP	10.62	□□□□□ -0.71
VPS60	YDR486C	SEM1	O94742	89 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	NMT1	P14743	455 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	ART10	P18634	518 aa	Known RBP	10.61	□□□□□ -0.71
VPS60	YDR486C	EXO70	P19658	623 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	PTH2	P34222	208 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	NUP120	P35729	1037 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	GMH1	P36125	273 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	RFC3	P38629	340 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	YHR045W	P38775	560 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	SSN3	P39073	555 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	PIK1	P39104	1066 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	EFM5	P53200	248 aa	Known RBP	10.61	□□□□□ -0.71
VPS60	YDR486C	IBD2	P53892	351 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	FMN1	Q03778	218 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	RIF2	Q06208	395 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	RSC3	Q06639	885 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	VAM6	Q07468	1049 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	YOL019W	Q08157	551 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	Q0182	Q9ZZW1	134 aa		10.61	□□□□□ -0.71
VPS60	YDR486C	ARG1	P22768	420 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	MVD1	P32377	396 aa	Known RBP	10.6	□□□□□ -0.71
VPS60	YDR486C	RIM11	P38615	370 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	YHR020W	P38708	688 aa	Known RBP	10.6	□□□□□ -0.71
VPS60	YDR486C	HSE1	P38753	452 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	BZZ1	P38822	633 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	MEP1	P40260	492 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	YRB1	P41920	201 aa	Known RBP	10.6	□□□□□ -0.71
VPS60	YDR486C	SLM2	P53955	656 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	CCE1	Q03702	353 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	ARX1	Q03862	593 aa	Known RBP	10.6	□□□□□ -0.71
VPS60	YDR486C	HPF1	Q05164	967 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	OPI10	Q08202	246 aa		10.6	□□□□□ -0.71
VPS60	YDR486C	YKR104W	P0CE69	306 aa		10.59	□□□□□ -0.71
VPS60	YDR486C	CHL1	P22516	861 aa	Predicted RBP	10.59	□□□□□ -0.71
VPS60	YDR486C	CLB1	P24868	471 aa		10.59	□□□□□ -0.71
VPS60	YDR486C	PHO84	P25297	587 aa	Known RBP	10.59	□□□□□ -0.71
VPS60	YDR486C	DHH1	P39517	506 aa	Known RBP	10.59	□□□□□ -0.71
VPS60	YDR486C	TMA22	P47089	198 aa	Predicted RBP	10.59	□□□□□ -0.71
VPS60	YDR486C	NNF1	P47149	201 aa		10.59	□□□□□ -0.71
VPS60	YDR486C	YGL108C	P53139	140 aa		10.59	□□□□□ -0.71
VPS60	YDR486C	CWC24	P53769	259 aa		10.59	□□□□□ -0.71
VPS60	YDR486C	EMI1	Q04406	187 aa		10.59	□□□□□ -0.71
VPS60	YDR486C	SAM4	Q08985	325 aa	Known RBP	10.59	□□□□□ -0.71
VPS60	YDR486C	YAR066W	P0CX18	203 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	YHR214W	P0CX19	203 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	RSC6	P25632	483 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	MLS1	P30952	554 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	RML2	P32611	393 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	TOA1	P32773	286 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	SIP2	P34164	415 aa	Known RBP	10.58	□□□□□ -0.72
VPS60	YDR486C	YKL151C	P36059	337 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	FMO1	P38866	432 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	YFR018C	P43599	363 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	ART5	P53244	586 aa	Known RBP	10.58	□□□□□ -0.72
VPS60	YDR486C	SHY1	P53266	389 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	HST3	P53687	447 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	GAS3	Q03655	524 aa		10.58	□□□□□ -0.72
VPS60	YDR486C	AHA1	Q12449	350 aa	Known RBP	10.58	□□□□□ -0.72
VPS60	YDR486C	CDC21	P06785	304 aa		10.57	□□□□□ -0.72

Retrieved 100 of 5,963 RNA–protein pairs in 1051.9 ms