RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W EAF1Q06337 982 aa4.52□□□□□ -1.69
SSH4YKL124W YDR056CQ12025 205 aa4.52□□□□□ -1.69
SSH4YKL124W NOP56Q12460 504 aaKnown RBP RIP-Chip data4.52□□□□□ -1.69not detected
SSH4YKL124W MER1P16523 270 aa4.51□□□□□ -1.69
SSH4YKL124W APA1P16550 321 aaKnown RBP4.51□□□□□ -1.69
SSH4YKL124W MCM10P32354 571 aa4.51□□□□□ -1.69
SSH4YKL124W RAD5P32849 1169 aaPredicted RBP4.51□□□□□ -1.69
SSH4YKL124W PMT1P33775 817 aa4.51□□□□□ -1.69
SSH4YKL124W MCX1P38323 520 aaPredicted RBP4.51□□□□□ -1.69
SSH4YKL124W OTU2P38747 307 aaKnown RBP4.51□□□□□ -1.69
SSH4YKL124W IST3P40565 148 aaPredicted RBP4.51□□□□□ -1.69
SSH4YKL124W RPS10BP46784 105 aaKnown RBP4.51□□□□□ -1.69
SSH4YKL124W YJL055WP47044 245 aa4.51□□□□□ -1.69
SSH4YKL124W YGL140CP53120 1219 aa4.51□□□□□ -1.69
SSH4YKL124W GGA1Q06336 557 aa4.51□□□□□ -1.69
SSH4YKL124W OPI10Q08202 246 aa4.51□□□□□ -1.69
SSH4YKL124W NTG2Q08214 380 aa4.51□□□□□ -1.69
SSH4YKL124W TRE2Q08693 809 aa4.51□□□□□ -1.69
SSH4YKL124W RPS10AQ08745 105 aaPredicted RBP4.51□□□□□ -1.69
SSH4YKL124W SFI1Q12369 946 aa4.51□□□□□ -1.69
SSH4YKL124W AFI1Q99222 893 aa4.51□□□□□ -1.69
SSH4YKL124W SEY1Q99287 776 aa4.51□□□□□ -1.69
SSH4YKL124W IRA2P19158 3079 aa4.5□□□□□ -1.69
SSH4YKL124W YLR462WO13556 202 aa4.5□□□□□ -1.69
SSH4YKL124W CYT1P07143 309 aa4.5□□□□□ -1.69
SSH4YKL124W HSF1P10961 833 aa4.5□□□□□ -1.69
SSH4YKL124W CKI1P20485 582 aa4.5□□□□□ -1.69
SSH4YKL124W SLY1P22213 666 aa4.5□□□□□ -1.69
SSH4YKL124W MNE1P24720 663 aa4.5□□□□□ -1.69
SSH4YKL124W YCR015CP25616 317 aa4.5□□□□□ -1.69
SSH4YKL124W RML2P32611 393 aa4.5□□□□□ -1.69
SSH4YKL124W ECM2P38241 364 aaKnown RBP4.5□□□□□ -1.69
SSH4YKL124W YHL049CP38722 271 aa4.5□□□□□ -1.69
SSH4YKL124W SER33P40510 469 aa4.5□□□□□ -1.69
SSH4YKL124W ALA1P40825 983 aaKnown RBP4.5□□□□□ -1.69
SSH4YKL124W YFL064CP43540 174 aa4.5□□□□□ -1.69
SSH4YKL124W BRO1P48582 844 aa4.5□□□□□ -1.69
SSH4YKL124W MNT2P53059 558 aa4.5□□□□□ -1.69
SSH4YKL124W NRD1P53617 575 aaKnown RBP RIP-Chip data4.5□□□□□ -1.69not detected
SSH4YKL124W INA17Q02888 182 aa4.5□□□□□ -1.69
SSH4YKL124W MSH6Q03834 1242 aa4.5□□□□□ -1.69
SSH4YKL124W YPR114WQ06107 315 aa4.5□□□□□ -1.69
SSH4YKL124W SWC7Q06707 132 aa4.5□□□□□ -1.69
SSH4YKL124W CMS1Q07897 291 aaKnown RBP4.5□□□□□ -1.69
SSH4YKL124W AAD15Q08361 143 aa4.5□□□□□ -1.69
SSH4YKL124W YLL056CQ12177 298 aa4.5□□□□□ -1.69
SSH4YKL124W YBL111CQ3E7Y5 667 aa4.5□□□□□ -1.69
SSH4YKL124W GAL1P04385 528 aa4.49□□□□□ -1.69
SSH4YKL124W RAD10P06838 210 aa4.49□□□□□ -1.69
SSH4YKL124W SLY41P22215 453 aa4.49□□□□□ -1.69
SSH4YKL124W SRB4P32569 687 aa4.49□□□□□ -1.69
SSH4YKL124W AIM26P32858 118 aa4.49□□□□□ -1.69
SSH4YKL124W DIA4P38705 446 aaPredicted RBP4.49□□□□□ -1.69
SSH4YKL124W PFS1P38872 237 aa4.49□□□□□ -1.69
SSH4YKL124W LCP5P40079 357 aaPredicted RBP4.49□□□□□ -1.69
SSH4YKL124W RAD26P40352 1085 aa4.49□□□□□ -1.69
SSH4YKL124W QDR1P40475 563 aa4.49□□□□□ -1.69
SSH4YKL124W BUD13P46947 266 aaPredicted RBP4.49□□□□□ -1.69
SSH4YKL124W IML2P47031 731 aa4.49□□□□□ -1.69
SSH4YKL124W HLJ1P48353 224 aa4.49□□□□□ -1.69
SSH4YKL124W ASN2P49090 572 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W STR3P53101 465 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W GPG1P53130 126 aa4.49□□□□□ -1.69
SSH4YKL124W NPY1P53164 384 aa4.49□□□□□ -1.69
SSH4YKL124W AQR1P53943 586 aa4.49□□□□□ -1.69
SSH4YKL124W MET14Q02196 202 aa4.49□□□□□ -1.69
SSH4YKL124W YPL113CQ02961 396 aa4.49□□□□□ -1.69
SSH4YKL124W HOT1Q03213 719 aa4.49□□□□□ -1.69
SSH4YKL124W RRB1Q04225 511 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W RSC58Q07979 502 aa4.49□□□□□ -1.69
SSH4YKL124W SAM4Q08985 325 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W YDR018CQ12185 396 aa4.49□□□□□ -1.69
SSH4YKL124W OCA6Q12454 224 aa4.49□□□□□ -1.69
SSH4YKL124W YOR338WQ99326 363 aa4.49□□□□□ -1.69
SSH4YKL124W COX3P00420 269 aa4.49□□□□□ -1.69
SSH4YKL124W SCH9P11792 824 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W SPO16P17122 198 aa4.49□□□□□ -1.69
SSH4YKL124W CLC1P17891 233 aa4.49□□□□□ -1.69
SSH4YKL124W CLN1P20437 546 aa4.49□□□□□ -1.69
SSH4YKL124W RRP43P25359 394 aaPredicted RBP4.49□□□□□ -1.69
SSH4YKL124W DEP1P31385 405 aa4.49□□□□□ -1.69
SSH4YKL124W HXT3P32466 567 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W MRE11P32829 692 aa4.49□□□□□ -1.69
SSH4YKL124W HSM3P38348 480 aa4.49□□□□□ -1.69
SSH4YKL124W PPE1P38796 400 aa4.49□□□□□ -1.69
SSH4YKL124W YPT35P38815 214 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W FLC2P39719 783 aa4.49□□□□□ -1.69
SSH4YKL124W SAW1P39735 261 aa4.49□□□□□ -1.69
SSH4YKL124W ELO3P40319 345 aa4.49□□□□□ -1.69
SSH4YKL124W ATM1P40416 690 aa4.49□□□□□ -1.69
SSH4YKL124W RET2P43621 546 aa4.49□□□□□ -1.69
SSH4YKL124W SIP4P46954 829 aa4.49□□□□□ -1.69
SSH4YKL124W GLG2P47011 380 aa4.49□□□□□ -1.69
SSH4YKL124W YJR124CP47159 448 aa4.49□□□□□ -1.69
SSH4YKL124W YML6P51998 286 aa4.49□□□□□ -1.69
SSH4YKL124W YGR127WP53275 312 aa4.49□□□□□ -1.69
SSH4YKL124W DIG1Q03063 452 aaKnown RBP4.49□□□□□ -1.69
SSH4YKL124W PPN1Q04119 674 aa4.49□□□□□ -1.69
SSH4YKL124W YDR278CQ05612 105 aa4.49□□□□□ -1.69
SSH4YKL124W FAP7Q12055 197 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 42.2 ms