RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 LorP18165 486 aa4.75□□□□□ -1.65
Trim56-201ENSMUST00000054384 Vps13bQ80TY5 3993 aa4.72□□□□□ -1.65
Trim56-201ENSMUST00000054384 Dnah7aE9Q0T8 4024 aa4.71□□□□□ -1.66
Trim56-201ENSMUST00000054384 Lce3bQ9CQM7 98 aa4.64□□□□□ -1.67
Trim56-201ENSMUST00000054384 Kmt2aP55200 3966 aa4.63□□□□□ -1.67
Trim56-201ENSMUST00000054384 PrkdcP97313 4128 aa4.61□□□□□ -1.67
Trim56-201ENSMUST00000054384 Dnah6E9Q0B6 4144 aa4.6□□□□□ -1.67
Trim56-201ENSMUST00000054384 Dnah10D3YYQ8 4591 aa4.56□□□□□ -1.68
Trim56-201ENSMUST00000054384 TnxbO35452 4006 aa4.56□□□□□ -1.68
Trim56-201ENSMUST00000054384 Gm10100J3QK64 120 aa4.56□□□□□ -1.68
Trim56-201ENSMUST00000054384 Lce3cQ91V05 98 aa4.55□□□□□ -1.68
Trim56-201ENSMUST00000054384 Dnah1E9Q8T7 4250 aa4.5□□□□□ -1.69
Trim56-201ENSMUST00000054384 Dnah14A0A140LIJ4 4489 aa4.49□□□□□ -1.69
Trim56-201ENSMUST00000054384 Gm10272F7CZ33 110 aa4.46□□□□□ -1.69
Trim56-201ENSMUST00000054384 Gm10142J3KMP7 120 aa4.45□□□□□ -1.7
Trim56-201ENSMUST00000054384 Lce3eF8VQJ0 98 aa4.44□□□□□ -1.7
Trim56-201ENSMUST00000054384 Lce3fQ6PAI4 98 aa4.44□□□□□ -1.7
Trim56-201ENSMUST00000054384 Vps13dB1ART2 4390 aa4.42□□□□□ -1.7
Trim56-201ENSMUST00000054384 Lce3dE9Q8V1 98 aa4.42□□□□□ -1.7
Trim56-201ENSMUST00000054384 Fras1Q80T14 4010 aa4.42□□□□□ -1.7
Trim56-201ENSMUST00000054384 Krtap31-2Q8CAY5 177 aa4.39□□□□□ -1.71
Trim56-201ENSMUST00000054384 2310046K23RikA0A0A6YVW6 87 aa4.35□□□□□ -1.71
Trim56-201ENSMUST00000054384 Dnah5Q8VHE6 4621 aa4.34□□□□□ -1.71
Trim56-201ENSMUST00000054384 Dync2h1Q45VK7 4306 aa4.33□□□□□ -1.72
Trim56-201ENSMUST00000054384 Lce3aQ497I5 98 aa4.32□□□□□ -1.72
Trim56-201ENSMUST00000054384 Sprr2iO70560 76 aa4.31□□□□□ -1.72
Trim56-201ENSMUST00000054384 Lce1mQ9CR91 182 aa4.31□□□□□ -1.72
Trim56-201ENSMUST00000054384 Krtap9-5A2A5X3 358 aa4.3□□□□□ -1.72
Trim56-201ENSMUST00000054384 Krtap31-1Q9D644 177 aa4.26□□□□□ -1.73
Trim56-201ENSMUST00000054384 Dnah2P0C6F1 4456 aa4.25□□□□□ -1.73
Trim56-201ENSMUST00000054384 Krtap16-3Q8C1I6 86 aa4.22□□□□□ -1.73
Trim56-201ENSMUST00000054384 Dnah17Q69Z23 4481 aa4.2□□□□□ -1.74
Trim56-201ENSMUST00000054384 Dnah11E9Q7N9 4488 aa4.19□□□□□ -1.74
Trim56-201ENSMUST00000054384 Gm10024A0A0A0MQA4 119 aa4.19□□□□□ -1.74
Trim56-201ENSMUST00000054384 Hectd4E9Q2E4 4418 aa4.19□□□□□ -1.74
Trim56-201ENSMUST00000054384 Lce1jD3YUU5 139 aa4.18□□□□□ -1.74
Trim56-201ENSMUST00000054384 Lce1gQ9D195 139 aa4.18□□□□□ -1.74
Trim56-201ENSMUST00000054384 Lce1iQ9D6P5 149 aa4.18□□□□□ -1.74
Trim56-201ENSMUST00000054384 Lce1hQ9D6R3 140 aa4.18□□□□□ -1.74
Trim56-201ENSMUST00000054384 Krtap19-3Q925H6 87 aa4.17□□□□□ -1.74
Trim56-201ENSMUST00000054384 Gm38119A0A0A6YX29 146 aa4.16□□□□□ -1.74
Trim56-201ENSMUST00000054384 Krtap22-2J3QNX6 67 aa4.14□□□□□ -1.75
Trim56-201ENSMUST00000054384 Mt2P02798 61 aa4.14□□□□□ -1.75
Trim56-201ENSMUST00000054384 Sprr2fO70557 76 aa4.13□□□□□ -1.75
Trim56-201ENSMUST00000054384 Pkhd1E9PZ36 4059 aa4.13□□□□□ -1.75
Trim56-201ENSMUST00000054384 Dnah9B1AR51 4484 aa4.1□□□□□ -1.75
Trim56-201ENSMUST00000054384 ApobE9Q414 4505 aa4.09□□□□□ -1.76
Trim56-201ENSMUST00000054384 Pkd1O08852 4293 aa4.05□□□□□ -1.76
Trim56-201ENSMUST00000054384 Sprr2eO70556 76 aa4.04□□□□□ -1.76
Trim56-201ENSMUST00000054384 Lce1bQ9D149 137 aa4.04□□□□□ -1.76
Trim56-201ENSMUST00000054384 Lce1fB9EJP6 147 aa4.02□□□□□ -1.77
Trim56-201ENSMUST00000054384 Lce1cQ9D1C5 147 aa4.02□□□□□ -1.77
Trim56-201ENSMUST00000054384 Lce1lQ9D1G7 135 aa4.02□□□□□ -1.77
Trim56-201ENSMUST00000054384 Lce1dQ9D731 133 aa4.02□□□□□ -1.77
Trim56-201ENSMUST00000054384 PlecQ9QXS1 4691 aaKnown RBP4.02□□□□□ -1.77
Trim56-201ENSMUST00000054384 Lce1eQ9D139 143 aa3.99□□□□□ -1.77
Trim56-201ENSMUST00000054384 Stard9Q80TF6 4561 aa3.99□□□□□ -1.77
Trim56-201ENSMUST00000054384 Krtap19-1Q925H2 87 aa3.99□□□□□ -1.77
Trim56-201ENSMUST00000054384 Prm1P02319 51 aa3.97□□□□□ -1.77
Trim56-201ENSMUST00000054384 Krtap19-2Q925I0 141 aa3.97□□□□□ -1.77
Trim56-201ENSMUST00000054384 SacsQ9JLC8 4582 aa3.93□□□□□ -1.78
Trim56-201ENSMUST00000054384 Fat1A0A1L1SQU7 4645 aa3.93□□□□□ -1.78
Trim56-201ENSMUST00000054384 Lrp1Q91ZX7 4545 aaKnown RBP3.92□□□□□ -1.78
Trim56-201ENSMUST00000054384 Krtap19-4Q925H7 84 aa3.91□□□□□ -1.78
Trim56-201ENSMUST00000054384 Ryr1E9PZQ0 5035 aa3.9□□□□□ -1.79
Trim56-201ENSMUST00000054384 Lrp1bQ9JI18 4599 aa3.89□□□□□ -1.79
Trim56-201ENSMUST00000054384 Krtap9-3Q3V2C1 136 aa3.89□□□□□ -1.79
Trim56-201ENSMUST00000054384 Mycbp2Q7TPH6 4711 aa3.89□□□□□ -1.79
Trim56-201ENSMUST00000054384 Pkhd1l1Q80ZA4 4249 aa3.88□□□□□ -1.79
Trim56-201ENSMUST00000054384 Dync1h1Q9JHU4 4644 aaKnown RBP3.88□□□□□ -1.79
Trim56-201ENSMUST00000054384 Fat2Q5F226 4351 aa3.84□□□□□ -1.8
Trim56-201ENSMUST00000054384 Dnah8Q91XQ0 4731 aa3.83□□□□□ -1.8
Trim56-201ENSMUST00000054384 Mt3P28184 68 aa3.82□□□□□ -1.8
Trim56-201ENSMUST00000054384 Krtap1-3A2A588 173 aa3.76□□□□□ -1.81
Trim56-201ENSMUST00000054384 Gm7735D3YX18 52 aa3.74□□□□□ -1.81
Trim56-201ENSMUST00000054384 Gm9789Q8BIG3 52 aa3.71□□□□□ -1.82
Trim56-201ENSMUST00000054384 Gm11569B1AQB1 180 aa3.68□□□□□ -1.82
Trim56-201ENSMUST00000054384 Mt4P47945 62 aa3.65□□□□□ -1.82
Trim56-201ENSMUST00000054384 Fat3Q8BNA6 4555 aa3.65□□□□□ -1.83
Trim56-201ENSMUST00000054384 HydinQ80W93 5154 aa3.65□□□□□ -1.83
Trim56-201ENSMUST00000054384 Sprr2hO70559 108 aa3.64□□□□□ -1.83
Trim56-201ENSMUST00000054384 Gm10061D3Z714 54 aa3.64□□□□□ -1.83
Trim56-201ENSMUST00000054384 Ryr3A2AGL3 4863 aa3.62□□□□□ -1.83
Trim56-201ENSMUST00000054384 Sprr2dO70555 85 aa3.55□□□□□ -1.84
Trim56-201ENSMUST00000054384 Kiaa1109A2AAE1 5005 aa3.53□□□□□ -1.84
Trim56-201ENSMUST00000054384 Ryr2E9Q401 4966 aaKnown RBP3.52□□□□□ -1.85
Trim56-201ENSMUST00000054384 Herc2Q4U2R1 4836 aa3.51□□□□□ -1.85
Trim56-201ENSMUST00000054384 Gm11562A0PK51 136 aa3.48□□□□□ -1.85
Trim56-201ENSMUST00000054384 Krtap4-6Q3V4B7 195 aa3.47□□□□□ -1.85
Trim56-201ENSMUST00000054384 Krtap4-2B1AQ85 167 aa3.46□□□□□ -1.86
Trim56-201ENSMUST00000054384 Dnhd1D3Z2X2 4750 aa3.46□□□□□ -1.86
Trim56-201ENSMUST00000054384 Lce1a2Q9D1K4 149 aa3.42□□□□□ -1.86
Trim56-201ENSMUST00000054384 Gm11938Q9D3H4 131 aa3.4□□□□□ -1.87
Trim56-201ENSMUST00000054384 Kmt2cQ8BRH4 4903 aa3.37□□□□□ -1.87
Trim56-201ENSMUST00000054384 Herc1E9PZP8 4859 aa3.37□□□□□ -1.87
Trim56-201ENSMUST00000054384 Birc6O88738 4882 aa3.36□□□□□ -1.87
Trim56-201ENSMUST00000054384 Krtap4-7Q9D732 168 aa3.32□□□□□ -1.88
Trim56-201ENSMUST00000054384 Lrp2A2ARV4 4660 aa3.32□□□□□ -1.88
Trim56-201ENSMUST00000054384 2300003K06RikA2A4M0 262 aa3.31□□□□□ -1.88
Trim56-201ENSMUST00000054384 PcloQ9QYX7 5068 aa3.3□□□□□ -1.88
Retrieved 100 of 22,080 RNA–protein pairs in 89 ms