RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 Romo1P60603 79 aa9.37□□□□□ -0.91
Shkbp1-201ENSMUST00000003857 2210017I01RikA0A0A6YVV1 95 aa9.34□□□□□ -0.91
Shkbp1-201ENSMUST00000003857 Dnhd1D3Z2X2 4750 aa9.14□□□□□ -0.95
Shkbp1-201ENSMUST00000003857 Gm21887J3QQ04 176 aa9.08□□□□□ -0.96
Shkbp1-201ENSMUST00000003857 B930094E09RikQ8C4T2 136 aa9.07□□□□□ -0.96
Shkbp1-201ENSMUST00000003857 Krtap13-1Q8K198 168 aa9.07□□□□□ -0.96
Shkbp1-201ENSMUST00000003857 Kiaa1109A2AAE1 5005 aa9.06□□□□□ -0.96
Shkbp1-201ENSMUST00000003857 Gm19426M0QWC7 77 aa9.04□□□□□ -0.96
Shkbp1-201ENSMUST00000003857 BC029722A0A0N4SW31 51 aa9.03□□□□□ -0.96
Shkbp1-201ENSMUST00000003857 Herc2Q4U2R1 4836 aa8.99□□□□□ -0.97
Shkbp1-201ENSMUST00000003857 Mp68P56379 58 aa8.99□□□□□ -0.97
Shkbp1-201ENSMUST00000003857 2310057N15RikQ9D6T8 200 aa8.99□□□□□ -0.97
Shkbp1-201ENSMUST00000003857 Birc6O88738 4882 aa8.95□□□□□ -0.98
Shkbp1-201ENSMUST00000003857 Gm20538F6Z9R1 75 aa8.94□□□□□ -0.98
Shkbp1-201ENSMUST00000003857 HydinQ80W93 5154 aa8.93□□□□□ -0.98
Shkbp1-201ENSMUST00000003857 Krtap1-5A2A590 122 aa8.87□□□□□ -0.99
Shkbp1-201ENSMUST00000003857 Gm17402F6Z0L5 76 aa8.86□□□□□ -0.99
Shkbp1-201ENSMUST00000003857 Sec61bQ9CQS8 96 aaKnown RBP8.84□□□□□ -0.99
Shkbp1-201ENSMUST00000003857 Lrp2A2ARV4 4660 aa8.83□□□□□ -1
Shkbp1-201ENSMUST00000003857 Gm19402J3QJV4 266 aa8.73□□□□□ -1.01
Shkbp1-201ENSMUST00000003857 Krtap7-1Q9D3I6 87 aa8.69□□□□□ -1.02
Shkbp1-201ENSMUST00000003857 Sprr2a3Q4KL71 83 aa8.63□□□□□ -1.03
Shkbp1-201ENSMUST00000003857 Sprr2a1Q9CQK8 83 aa8.63□□□□□ -1.03
Shkbp1-201ENSMUST00000003857 Krtap16-3Q8C1I6 86 aa8.61□□□□□ -1.03
Shkbp1-201ENSMUST00000003857 Fam229aB2KGE5 128 aa8.56□□□□□ -1.04
Shkbp1-201ENSMUST00000003857 Spink7Q6IE32 76 aa8.51□□□□□ -1.05
Shkbp1-201ENSMUST00000003857 Gm10318A0A1W2P728 225 aa8.51□□□□□ -1.05
Shkbp1-201ENSMUST00000003857 Crct1Q6PAI5 102 aa8.5□□□□□ -1.05
Shkbp1-201ENSMUST00000003857 Krtap19-1Q925H2 87 aa8.49□□□□□ -1.05
Shkbp1-201ENSMUST00000003857 Gm40193A0A1B0GT39 78 aa8.49□□□□□ -1.05
Shkbp1-201ENSMUST00000003857 PcloQ9QYX7 5068 aa8.49□□□□□ -1.05
Shkbp1-201ENSMUST00000003857 Krtap19-3Q925H6 87 aa8.41□□□□□ -1.06
Shkbp1-201ENSMUST00000003857 Ndufaf8A2AMZ4 74 aa8.36□□□□□ -1.07
Shkbp1-201ENSMUST00000003857 Gm19668J3QMD1 248 aa8.3□□□□□ -1.08
Shkbp1-201ENSMUST00000003857 Krtap1-4Q3V2D6 188 aa8.29□□□□□ -1.08
Shkbp1-201ENSMUST00000003857 Herc1E9PZP8 4859 aa8.2□□□□□ -1.1
Shkbp1-201ENSMUST00000003857 Camk2n1Q6QWF9 78 aa8.2□□□□□ -1.1
Shkbp1-201ENSMUST00000003857 ZanO88799 5376 aa8.07□□□□□ -1.12
Shkbp1-201ENSMUST00000003857 4932415D10RikA0A1W2P6U8 4986 aa8.05□□□□□ -1.12
Shkbp1-201ENSMUST00000003857 Lce1jD3YUU5 139 aa7.97□□□□□ -1.13
Shkbp1-201ENSMUST00000003857 Krtap1-3A2A588 173 aa7.95□□□□□ -1.14
Shkbp1-201ENSMUST00000003857 Hmcn2A2AJ76 5100 aa7.93□□□□□ -1.14
Shkbp1-201ENSMUST00000003857 Ush2AQ2QI47 5193 aa7.92□□□□□ -1.14
Shkbp1-201ENSMUST00000003857 Lce1mQ9CR91 182 aa7.91□□□□□ -1.14
Shkbp1-201ENSMUST00000003857 Ubr4A2AN08 5180 aa7.91□□□□□ -1.14
Shkbp1-201ENSMUST00000003857 Prm2P07978 107 aa7.88□□□□□ -1.15
Shkbp1-201ENSMUST00000003857 Krtap12-1Q9Z287 130 aa7.88□□□□□ -1.15
Shkbp1-201ENSMUST00000003857 Krtap19-9aF8WH65 55 aa7.86□□□□□ -1.15
Shkbp1-201ENSMUST00000003857 Fat4Q2PZL6 4981 aa7.85□□□□□ -1.15
Shkbp1-201ENSMUST00000003857 LorP18165 486 aa7.76□□□□□ -1.17
Shkbp1-201ENSMUST00000003857 Tnp1P10856 55 aa7.74□□□□□ -1.17
Shkbp1-201ENSMUST00000003857 Rnf213E9Q555 5152 aaKnown RBP7.67□□□□□ -1.18
Shkbp1-201ENSMUST00000003857 Gm9789Q8BIG3 52 aa7.62□□□□□ -1.19
Shkbp1-201ENSMUST00000003857 Krtap8-1O08633 61 aa7.58□□□□□ -1.2
Shkbp1-201ENSMUST00000003857 Krtap17-1A2A5X6 109 aa7.56□□□□□ -1.2
Shkbp1-201ENSMUST00000003857 Gm9112A2AI92 75 aa7.53□□□□□ -1.2
Shkbp1-201ENSMUST00000003857 Lce1iQ9D6P5 149 aa7.48□□□□□ -1.21
Shkbp1-201ENSMUST00000003857 Gm18596A0A1W2P860 280 aa7.45□□□□□ -1.22
Shkbp1-201ENSMUST00000003857 Prm1P02319 51 aa7.44□□□□□ -1.22
Shkbp1-201ENSMUST00000003857 Krtap19-9bQ99NG9 58 aa7.44□□□□□ -1.22
Shkbp1-201ENSMUST00000003857 Lce1a2Q9D1K4 149 aa7.44□□□□□ -1.22
Shkbp1-201ENSMUST00000003857 Krtap19-2Q925I0 141 aa7.42□□□□□ -1.22
Shkbp1-201ENSMUST00000003857 2310046K23RikA0A0A6YVW6 87 aa7.41□□□□□ -1.22
Shkbp1-201ENSMUST00000003857 Gm7735D3YX18 52 aa7.4□□□□□ -1.23
Shkbp1-201ENSMUST00000003857 SspoQ8CG65 4998 aa7.4□□□□□ -1.23
Shkbp1-201ENSMUST00000003857 Krtap9-5A2A5X3 358 aa7.34□□□□□ -1.23
Shkbp1-201ENSMUST00000003857 Krtap9-3Q3V2C1 136 aa7.23□□□□□ -1.25
Shkbp1-201ENSMUST00000003857 Lce1hQ9D6R3 140 aa7.15□□□□□ -1.26
Shkbp1-201ENSMUST00000003857 Mt2P02798 61 aa6.95□□□□□ -1.3
Shkbp1-201ENSMUST00000003857 Muc5bE9Q5I3 4800 aa6.95□□□□□ -1.3
Shkbp1-201ENSMUST00000003857 Gm6358A0A087WPH4 74 aa6.93□□□□□ -1.3
Shkbp1-201ENSMUST00000003857 Gm10061D3Z714 54 aa6.9□□□□□ -1.31
Shkbp1-201ENSMUST00000003857 Lce1dQ9D731 133 aa6.74□□□□□ -1.33
Shkbp1-201ENSMUST00000003857 Sprr2gO70558 76 aa6.62□□□□□ -1.35
Shkbp1-201ENSMUST00000003857 Lce1eQ9D139 143 aa6.52□□□□□ -1.37
Shkbp1-201ENSMUST00000003857 Krtap22-2J3QNX6 67 aa6.51□□□□□ -1.37
Shkbp1-201ENSMUST00000003857 Sprr2dO70555 85 aa6.5□□□□□ -1.37
Shkbp1-201ENSMUST00000003857 Gm11938Q9D3H4 131 aa6.47□□□□□ -1.37
Shkbp1-201ENSMUST00000003857 4933428G20RikQ9D3X4 101 aa6.47□□□□□ -1.37
Shkbp1-201ENSMUST00000003857 Gm10272F7CZ33 110 aa6.45□□□□□ -1.38
Shkbp1-201ENSMUST00000003857 Gm11569B1AQB1 180 aa6.37□□□□□ -1.39
Shkbp1-201ENSMUST00000003857 Gm11562A0PK51 136 aa6.27□□□□□ -1.41
Shkbp1-201ENSMUST00000003857 Lce1cQ9D1C5 147 aa6.2□□□□□ -1.42
Shkbp1-201ENSMUST00000003857 Mdn1A2ANY6 5589 aaKnown RBP6.18□□□□□ -1.42
Shkbp1-201ENSMUST00000003857 Krtap19-4Q925H7 84 aa6.06□□□□□ -1.44
Shkbp1-201ENSMUST00000003857 Gm10100J3QK64 120 aa5.98□□□□□ -1.45
Shkbp1-201ENSMUST00000003857 Lce3bQ9CQM7 98 aa5.98□□□□□ -1.45
Shkbp1-201ENSMUST00000003857 Lce1fB9EJP6 147 aa5.96□□□□□ -1.45
Shkbp1-201ENSMUST00000003857 Lce1a1Q9CQH5 143 aa5.96□□□□□ -1.45
Shkbp1-201ENSMUST00000003857 Syne1Q6ZWR6 8799 aa5.9□□□□□ -1.47
Shkbp1-201ENSMUST00000003857 Gm10142J3KMP7 120 aa5.86□□□□□ -1.47
Shkbp1-201ENSMUST00000003857 Krtap4-6Q3V4B7 195 aa5.77□□□□□ -1.49
Shkbp1-201ENSMUST00000003857 Sprr2iO70560 76 aa5.71□□□□□ -1.5
Shkbp1-201ENSMUST00000003857 Sprr2hO70559 108 aa5.7□□□□□ -1.5
Shkbp1-201ENSMUST00000003857 Lce3cQ91V05 98 aa5.7□□□□□ -1.5
Shkbp1-201ENSMUST00000003857 Lce3dE9Q8V1 98 aa5.67□□□□□ -1.5
Shkbp1-201ENSMUST00000003857 Gm11555B1AQ89 175 aa5.66□□□□□ -1.5
Shkbp1-201ENSMUST00000003857 Krtap4-1Q3UUY3 169 aa5.64□□□□□ -1.51
Shkbp1-201ENSMUST00000003857 A0A1Y7VLE6 161 aa5.59□□□□□ -1.51
Shkbp1-201ENSMUST00000003857 Lce3eF8VQJ0 98 aa5.59□□□□□ -1.51
Retrieved 100 of 22,080 RNA–protein pairs in 94.7 ms