RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W MOB1P40484 314 aa14.28□□□□□ -0.12
DEP1YAL013W BUD13P46947 266 aaPredicted RBP14.28□□□□□ -0.12
DEP1YAL013W HST2P53686 357 aa14.28□□□□□ -0.12
DEP1YAL013W YML119WQ03208 357 aa14.28□□□□□ -0.12
DEP1YAL013W RSC2Q06488 889 aa14.28□□□□□ -0.12
DEP1YAL013W BUD20Q08004 166 aaPredicted RBP14.28□□□□□ -0.12
DEP1YAL013W NDD1Q08887 554 aa14.28□□□□□ -0.12
DEP1YAL013W HSF1P10961 833 aa14.27□□□□□ -0.13
DEP1YAL013W HSP26P15992 214 aaKnown RBP RIP-Chip data14.27□□□□□ -0.13not detected
DEP1YAL013W YBR062CP38239 180 aa14.27□□□□□ -0.13
DEP1YAL013W SSP120P39931 234 aaKnown RBP14.27□□□□□ -0.13
DEP1YAL013W TIM13P53299 105 aa14.27□□□□□ -0.13
DEP1YAL013W YNR063WP53749 607 aa14.27□□□□□ -0.13
DEP1YAL013W ADE12P80210 433 aaKnown RBP14.27□□□□□ -0.13
DEP1YAL013W TOF2Q02208 771 aa14.27□□□□□ -0.13
DEP1YAL013W YMR206WQ03695 313 aa14.27□□□□□ -0.13
DEP1YAL013W NHX1Q04121 633 aa14.27□□□□□ -0.13
DEP1YAL013W CMS1Q07897 291 aaKnown RBP14.27□□□□□ -0.13
DEP1YAL013W KCS1Q12494 1050 aa14.27□□□□□ -0.13
DEP1YAL013W CLN1P20437 546 aa14.26□□□□□ -0.13
DEP1YAL013W RIM1P32445 135 aaKnown RBP14.26□□□□□ -0.13
DEP1YAL013W SLD2P34252 453 aa14.26□□□□□ -0.13
DEP1YAL013W TGL4P36165 910 aa14.26□□□□□ -0.13
DEP1YAL013W RDH54P38086 958 aa14.26□□□□□ -0.13
DEP1YAL013W YHI9P38765 294 aa14.26□□□□□ -0.13
DEP1YAL013W LIN1P38852 340 aaPredicted RBP14.26□□□□□ -0.13
DEP1YAL013W AMA1P50082 593 aa14.26□□□□□ -0.13
DEP1YAL013W PAN2P53010 1115 aaPredicted RBP14.26□□□□□ -0.13
DEP1YAL013W YGL140CP53120 1219 aa14.26□□□□□ -0.13
DEP1YAL013W BUD32P53323 261 aa14.26□□□□□ -0.13
DEP1YAL013W LEE1Q02799 301 aaKnown RBP14.26□□□□□ -0.13
DEP1YAL013W LDB18Q07887 179 aa14.26□□□□□ -0.13
DEP1YAL013W ENO1P00924 437 aaKnown RBP14.25□□□□□ -0.13
DEP1YAL013W REV1P12689 985 aa14.25□□□□□ -0.13
DEP1YAL013W ATP12P22135 325 aa14.25□□□□□ -0.13
DEP1YAL013W MRPL8P22353 238 aa14.25□□□□□ -0.13
DEP1YAL013W MSH2P25847 964 aa14.25□□□□□ -0.13
DEP1YAL013W COQ8P27697 501 aa14.25□□□□□ -0.13
DEP1YAL013W HRR25P29295 494 aaKnown RBP14.25□□□□□ -0.13
DEP1YAL013W MCM5P29496 775 aaKnown RBP14.25□□□□□ -0.13
DEP1YAL013W NIP1P32497 812 aaKnown RBP14.25□□□□□ -0.13
DEP1YAL013W CYM1P32898 989 aa14.25□□□□□ -0.13
DEP1YAL013W POL12P38121 705 aaPredicted RBP14.25□□□□□ -0.13
DEP1YAL013W GDT1P38301 280 aaPredicted RBP14.25□□□□□ -0.13
DEP1YAL013W PEP8P40335 379 aa14.25□□□□□ -0.13
DEP1YAL013W IPI3P53877 555 aa14.25□□□□□ -0.13
DEP1YAL013W NOP15P53927 220 aaPredicted RBP14.25□□□□□ -0.13
DEP1YAL013W YNL058CP53947 316 aa14.25□□□□□ -0.13
DEP1YAL013W NUP100Q02629 959 aa14.25□□□□□ -0.13
DEP1YAL013W NSE5Q03718 556 aa14.25□□□□□ -0.13
DEP1YAL013W YDR344CQ05510 147 aa14.25□□□□□ -0.13
DEP1YAL013W RMD5Q12508 421 aa14.25□□□□□ -0.13
DEP1YAL013W UBR1P19812 1950 aa14.25□□□□□ -0.13
DEP1YAL013W MIH1P23748 554 aa14.24□□□□□ -0.13
DEP1YAL013W MRPL40P36534 297 aa14.24□□□□□ -0.13
DEP1YAL013W YSW1P38280 609 aa14.24□□□□□ -0.13
DEP1YAL013W MEF2P39677 819 aa14.24□□□□□ -0.13
DEP1YAL013W EXO1P39875 702 aa14.24□□□□□ -0.13
DEP1YAL013W TUB4P53378 473 aa14.24□□□□□ -0.13
DEP1YAL013W DOS2P54858 310 aa14.24□□□□□ -0.13
DEP1YAL013W RSC4Q02206 625 aa14.24□□□□□ -0.13
DEP1YAL013W SEG1Q04279 960 aa14.24□□□□□ -0.13
DEP1YAL013W CRP1P38845 465 aaKnown RBP14.23□□□□□ -0.13
DEP1YAL013W HEM14P40012 539 aa14.23□□□□□ -0.13
DEP1YAL013W MRX1P40050 688 aa14.23□□□□□ -0.13
DEP1YAL013W RCF2P53721 224 aa14.23□□□□□ -0.13
DEP1YAL013W TRS31Q03337 283 aa14.23□□□□□ -0.13
DEP1YAL013W PEX11Q12462 236 aa14.23□□□□□ -0.13
DEP1YAL013W YDR034W-BQ6Q5X2 51 aa14.23□□□□□ -0.13
DEP1YAL013W GCY1P14065 312 aaKnown RBP RIP-Chip data14.22□□□□□ -0.13not detected
DEP1YAL013W AMD2P22580 549 aa14.22□□□□□ -0.13
DEP1YAL013W SEC14P24280 304 aaKnown RBP14.22□□□□□ -0.13
DEP1YAL013W ALY1P36117 915 aa14.22□□□□□ -0.13
DEP1YAL013W MRP21P38175 177 aa14.22□□□□□ -0.13
DEP1YAL013W MNN1P39106 762 aa14.22□□□□□ -0.13
DEP1YAL013W TFB2Q02939 513 aa14.22□□□□□ -0.13
DEP1YAL013W PEX15Q08215 383 aa14.22□□□□□ -0.13
DEP1YAL013W YLR046CQ12253 270 aa14.22□□□□□ -0.13
DEP1YAL013W SPE4Q12455 300 aa14.22□□□□□ -0.13
DEP1YAL013W YMR030W-AQ3E760 96 aa14.22□□□□□ -0.13
DEP1YAL013W RGS2Q99188 309 aa14.22□□□□□ -0.13
DEP1YAL013W YLR149CQ99296 730 aa14.22□□□□□ -0.13
DEP1YAL013W ERG20P08524 352 aaKnown RBP14.21□□□□□ -0.13
DEP1YAL013W YMR085WP0CF18 432 aa14.21□□□□□ -0.13
DEP1YAL013W UBP7P40453 1071 aa14.21□□□□□ -0.13
DEP1YAL013W TAF6P53040 516 aa14.21□□□□□ -0.13
DEP1YAL013W PEX8P53248 589 aa14.21□□□□□ -0.13
DEP1YAL013W YTP1P53584 459 aa14.21□□□□□ -0.13
DEP1YAL013W RNY1Q02933 434 aaKnown RBP14.21□□□□□ -0.13
DEP1YAL013W YMR209CQ03648 457 aa14.21□□□□□ -0.13
DEP1YAL013W SHE9Q04172 456 aa14.21□□□□□ -0.13
DEP1YAL013W NOB1Q08444 459 aaKnown RBP14.21□□□□□ -0.13
DEP1YAL013W SGO1Q08490 590 aa14.21□□□□□ -0.13
DEP1YAL013W TRE2Q08693 809 aa14.21□□□□□ -0.13
DEP1YAL013W RIM2P38127 377 aa14.2□□□□□ -0.14
DEP1YAL013W RPL34BP40525 121 aaKnown RBP14.2□□□□□ -0.14
DEP1YAL013W PML39Q03760 334 aa14.2□□□□□ -0.14
DEP1YAL013W YSH1Q06224 779 aaPredicted RBP14.2□□□□□ -0.14
DEP1YAL013W SYT1Q06836 1226 aa14.2□□□□□ -0.14
DEP1YAL013W ARF2P19146 181 aaKnown RBP14.19□□□□□ -0.14
Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms