RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 RetnlbQ99P86 105 aa8.18□□□□□ -1.1
Trim56-201ENSMUST00000054384 Gm10308Q9CVR5 141 aa8.17□□□□□ -1.1
Trim56-201ENSMUST00000054384 MobpQ9D2P8 170 aa8.17□□□□□ -1.1
Trim56-201ENSMUST00000054384 Coa5Q99M07 74 aa8.16□□□□□ -1.1
Trim56-201ENSMUST00000054384 SetxA2AKX3 2646 aa8.16□□□□□ -1.1
Trim56-201ENSMUST00000054384 Cdc42se1Q8BHL7 80 aa8.16□□□□□ -1.1
Trim56-201ENSMUST00000054384 Gm27235Q3UW50 83 aa8.15□□□□□ -1.1
Trim56-201ENSMUST00000054384 Snhg11Q4G0K9 87 aa8.15□□□□□ -1.1
Trim56-201ENSMUST00000054384 Gm26661M0QWV4 156 aa8.14□□□□□ -1.11
Trim56-201ENSMUST00000054384 Rnase13Q5GAM7 153 aa8.14□□□□□ -1.11
Trim56-201ENSMUST00000054384 Phxr5P08399 672 aa8.13□□□□□ -1.11
Trim56-201ENSMUST00000054384 FasnP19096 2504 aaKnown RBP8.12□□□□□ -1.11
Trim56-201ENSMUST00000054384 Ankrd11E9Q4F7 2643 aa8.12□□□□□ -1.11
Trim56-201ENSMUST00000054384 Gm17689B3GLJ4 109 aa8.12□□□□□ -1.11
Trim56-201ENSMUST00000054384 Q8BT88 171 aa8.11□□□□□ -1.11
Trim56-201ENSMUST00000054384 Uqcr11Q9CPX8 56 aa8.11□□□□□ -1.11
Trim56-201ENSMUST00000054384 Srsf12Q8C8K3 266 aa8.1□□□□□ -1.11
Trim56-201ENSMUST00000054384 Bahcc1Q3UHR0 2643 aa8.09□□□□□ -1.11
Trim56-201ENSMUST00000054384 Prr13Q9CQJ5 137 aa8.08□□□□□ -1.12
Trim56-201ENSMUST00000054384 7530416G11RikJ3QJX6 159 aa8.08□□□□□ -1.12
Trim56-201ENSMUST00000054384 Psors1c2Q80ZC9 134 aa8.08□□□□□ -1.12
Trim56-201ENSMUST00000054384 Pla2g10Q9QXX3 151 aa8.08□□□□□ -1.12
Trim56-201ENSMUST00000054384 Fam168bQ80XQ8 194 aa8.07□□□□□ -1.12
Trim56-201ENSMUST00000054384 Gm10643Q3URG9 111 aa8.07□□□□□ -1.12
Trim56-201ENSMUST00000054384 Gm10837Q3UTT8 145 aa8.07□□□□□ -1.12
Trim56-201ENSMUST00000054384 Gm5617Q91VN2 117 aa8.06□□□□□ -1.12
Trim56-201ENSMUST00000054384 CicQ924A2 2510 aa8.05□□□□□ -1.12
Trim56-201ENSMUST00000054384 Phxr4P15974 95 aa8.05□□□□□ -1.12
Trim56-201ENSMUST00000054384 Abca12E9Q876 2595 aa8.04□□□□□ -1.12
Trim56-201ENSMUST00000054384 Gm10772F7AIG4 85 aa8.02□□□□□ -1.13
Trim56-201ENSMUST00000054384 Krtap24-1G3X9A2 248 aa8.01□□□□□ -1.13
Trim56-201ENSMUST00000054384 CriptO70333 101 aa7.98□□□□□ -1.13
Trim56-201ENSMUST00000054384 HrnrQ8VHD8 2496 aa7.96□□□□□ -1.14
Trim56-201ENSMUST00000054384 Unc79Q0KK59 2596 aa7.96□□□□□ -1.14
Trim56-201ENSMUST00000054384 Krtap11-1E9Q2E9 183 aa7.95□□□□□ -1.14
Trim56-201ENSMUST00000054384 Krtap26-1Q9D7N2 215 aa7.93□□□□□ -1.14
Trim56-201ENSMUST00000054384 Spata3Q9D9T6 193 aa7.93□□□□□ -1.14
Trim56-201ENSMUST00000054384 Sprr4Q8CGN8 76 aa7.92□□□□□ -1.14
Trim56-201ENSMUST00000054384 Fn1P11276 2477 aaKnown RBP7.91□□□□□ -1.14
Trim56-201ENSMUST00000054384 Cypt15B1AXS0 87 aa7.9□□□□□ -1.14
Trim56-201ENSMUST00000054384 Gm7276Q3TYW4 209 aa7.9□□□□□ -1.14
Trim56-201ENSMUST00000054384 Gm3285A0A1W2P7U0 201 aa7.89□□□□□ -1.15
Trim56-201ENSMUST00000054384 AY074887Q8R5F9 132 aa7.89□□□□□ -1.15
Trim56-201ENSMUST00000054384 Prrc2cQ3TLH4 2846 aaKnown RBP7.88□□□□□ -1.15
Trim56-201ENSMUST00000054384 Akap13E9Q394 2776 aa7.87□□□□□ -1.15
Trim56-201ENSMUST00000054384 AW011738F6S7Q2 159 aa7.85□□□□□ -1.15
Trim56-201ENSMUST00000054384 A330070K13RikQ8CA53 115 aa7.85□□□□□ -1.15
Trim56-201ENSMUST00000054384 Nsd1O88491 2588 aaKnown RBP7.84□□□□□ -1.15
Trim56-201ENSMUST00000054384 SrcapA0A087WQ44 3271 aa7.84□□□□□ -1.15
Trim56-201ENSMUST00000054384 Gm21798J3QNU5 87 aa7.83□□□□□ -1.16
Trim56-201ENSMUST00000054384 Zfp292Q9Z2U2 2698 aa7.83□□□□□ -1.16
Trim56-201ENSMUST00000054384 Eif4ebp3Q80VV3 101 aa7.83□□□□□ -1.16
Trim56-201ENSMUST00000054384 1810062G17RikG3X8Y2 129 aa7.81□□□□□ -1.16
Trim56-201ENSMUST00000054384 Chtf8P0CG14 533 aa7.81□□□□□ -1.16
Trim56-201ENSMUST00000054384 Gm26620Q9CY65 116 aa7.81□□□□□ -1.16
Trim56-201ENSMUST00000054384 Sprr1bQ62267 153 aa7.8□□□□□ -1.16
Trim56-201ENSMUST00000054384 Defb9Q8R2I6 67 aa7.79□□□□□ -1.16
Trim56-201ENSMUST00000054384 Gcn1E9PVA8 2671 aaKnown RBP7.78□□□□□ -1.16
Trim56-201ENSMUST00000054384 2310034C09RikQ9D746 214 aa7.78□□□□□ -1.16
Trim56-201ENSMUST00000054384 Lypd5Q9D7Z7 256 aa7.78□□□□□ -1.16
Trim56-201ENSMUST00000054384 FlnaQ8BTM8 2647 aaKnown RBP7.77□□□□□ -1.17
Trim56-201ENSMUST00000054384 Gm11213A0A1B0GR83 88 aa7.76□□□□□ -1.17
Trim56-201ENSMUST00000054384 Gm9955Q8CEJ8 102 aa7.76□□□□□ -1.17
Trim56-201ENSMUST00000054384 Anapc11Q9CPX9 84 aa7.75□□□□□ -1.17
Trim56-201ENSMUST00000054384 Gm3880A0A1B0GSB3 72 aa7.74□□□□□ -1.17
Trim56-201ENSMUST00000054384 C530025M09RikF6RGA8 229 aa7.74□□□□□ -1.17
Trim56-201ENSMUST00000054384 AtrQ9JKK8 2635 aa7.73□□□□□ -1.17
Trim56-201ENSMUST00000054384 Spink7Q6IE32 76 aa7.73□□□□□ -1.17
Trim56-201ENSMUST00000054384 Gm9821Q8K076 103 aa7.72□□□□□ -1.17
Trim56-201ENSMUST00000054384 Gm3250E9Q1M3 230 aa7.71□□□□□ -1.17
Trim56-201ENSMUST00000054384 Gm9195A0A140LHT4 2805 aa7.7□□□□□ -1.18
Trim56-201ENSMUST00000054384 FlnbQ80X90 2602 aaKnown RBP7.69□□□□□ -1.18
Trim56-201ENSMUST00000054384 Fam104aA2A6P4 185 aa7.68□□□□□ -1.18
Trim56-201ENSMUST00000054384 CnbpP53996 178 aaKnown RBP7.68□□□□□ -1.18
Trim56-201ENSMUST00000054384 Zcchc13Q9D548 170 aa7.68□□□□□ -1.18
Trim56-201ENSMUST00000054384 PcntP48725 2898 aa7.67□□□□□ -1.18
Trim56-201ENSMUST00000054384 Fam229bQ8CF36 80 aa7.67□□□□□ -1.18
Trim56-201ENSMUST00000054384 Stab1Q8R4Y4 2571 aa7.66□□□□□ -1.18
Trim56-201ENSMUST00000054384 OxtP35454 125 aa7.65□□□□□ -1.18
Trim56-201ENSMUST00000054384 Notch1Q01705 2531 aa7.65□□□□□ -1.19
Trim56-201ENSMUST00000054384 6030445D17RikE9Q8F9 148 aa7.64□□□□□ -1.19
Trim56-201ENSMUST00000054384 Plac8Q9JI48 112 aa7.64□□□□□ -1.19
Trim56-201ENSMUST00000054384 Jbts17Q8CE72 3214 aa7.63□□□□□ -1.19
Trim56-201ENSMUST00000054384 Map1aQ9QYR6 2776 aa7.63□□□□□ -1.19
Trim56-201ENSMUST00000054384 Golgb1E9PVZ8 3238 aa7.62□□□□□ -1.19
Trim56-201ENSMUST00000054384 Cypt14J3QPF7 87 aa7.6□□□□□ -1.19
Trim56-201ENSMUST00000054384 Gm4491E0CX42 125 aa7.58□□□□□ -1.2
Trim56-201ENSMUST00000054384 Dnah12Q3V0Q1 3086 aa7.54□□□□□ -1.2
Trim56-201ENSMUST00000054384 Hectd1Q69ZR2 2618 aaKnown RBP7.52□□□□□ -1.21
Trim56-201ENSMUST00000054384 NbdyA0A0N4SUI7 68 aa7.52□□□□□ -1.21
Trim56-201ENSMUST00000054384 CenpfE9Q3P4 2997 aaKnown RBP7.51□□□□□ -1.21
Trim56-201ENSMUST00000054384 Gm42715A0A087WP63 3095 aaKnown RBP7.51□□□□□ -1.21
Trim56-201ENSMUST00000054384 Camk2n1Q6QWF9 78 aa7.5□□□□□ -1.21
Trim56-201ENSMUST00000054384 Mast4Q811L6 2618 aa7.49□□□□□ -1.21
Trim56-201ENSMUST00000054384 Gm10065F6TJM2 114 aa7.48□□□□□ -1.21
Trim56-201ENSMUST00000054384 Smim29Q8R043 75 aa7.44□□□□□ -1.22
Trim56-201ENSMUST00000054384 9530053A07RikE9PVG8 2581 aa7.41□□□□□ -1.22
Trim56-201ENSMUST00000054384 NipblQ6KCD5 2798 aaKnown RBP7.4□□□□□ -1.22
Trim56-201ENSMUST00000054384 Krtap15-1Q9QZU5 150 aa7.4□□□□□ -1.23
Trim56-201ENSMUST00000054384 Odf3bQ5M8M2 238 aa7.39□□□□□ -1.23
Retrieved 100 of 22,080 RNA–protein pairs in 82.8 ms