RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Prss58Q8BW11 241 aa9.46□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gm10772F7AIG4 85 aa9.45□□□□□ -0.9
Nup88-201ENSMUST00000035283 Cox7a1P56392 80 aa9.45□□□□□ -0.9
Nup88-201ENSMUST00000035283 D130052B06RikQ3UW13 202 aa9.45□□□□□ -0.9
Nup88-201ENSMUST00000035283 Trav13d-4A0A0G2JFX3 110 aa9.45□□□□□ -0.9
Nup88-201ENSMUST00000035283 Xcl1P47993 114 aa9.45□□□□□ -0.9
Nup88-201ENSMUST00000035283 Akap13E9Q394 2776 aa9.45□□□□□ -0.9
Nup88-201ENSMUST00000035283 Bles03Q8VD62 251 aa9.44□□□□□ -0.9
Nup88-201ENSMUST00000035283 Hspg2Q05793 3707 aaKnown RBP9.44□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gm5089A1L3C8 106 aa9.43□□□□□ -0.9
Nup88-201ENSMUST00000035283 Spata25Q9DA57 226 aa9.43□□□□□ -0.9
Nup88-201ENSMUST00000035283 Ighv8-11A0A075B5X4 119 aa9.43□□□□□ -0.9
Nup88-201ENSMUST00000035283 Igkv6-13A0A0G2JGY3 119 aa9.43□□□□□ -0.9
Nup88-201ENSMUST00000035283 4930519P11RikQ9CUJ8 166 aa9.43□□□□□ -0.9
Nup88-201ENSMUST00000035283 Zfand2aQ9JII7 171 aa9.43□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gm3618D3Z4P5 127 aa9.42□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gm20726G3UX18 150 aa9.42□□□□□ -0.9
Nup88-201ENSMUST00000035283 Rpl35aO55142 110 aa9.42□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gm2916Q9D9B9 127 aa9.42□□□□□ -0.9
Nup88-201ENSMUST00000035283 MobpQ9D2P8 170 aa9.42□□□□□ -0.9
Nup88-201ENSMUST00000035283 Ankrd17Q99NH0 2603 aaKnown RBP9.42□□□□□ -0.9
Nup88-201ENSMUST00000035283 Tenm3Q9WTS6 2715 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 Trav13n-2A0A0G2JF93 110 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 MtorQ9JLN9 2549 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 Trav13-1A0A075B644 110 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 Igkv1-99F6XWB2 120 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gpha2Q925Q5 128 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 Tomm7Q9D173 55 aa9.41□□□□□ -0.9
Nup88-201ENSMUST00000035283 C2cd3Q52KB6 2323 aa9.4□□□□□ -0.9
Nup88-201ENSMUST00000035283 Ighv2-9-1A0A075B697 116 aa9.4□□□□□ -0.9
Nup88-201ENSMUST00000035283 Dnal4Q9DCM4 105 aa9.4□□□□□ -0.9
Nup88-201ENSMUST00000035283 Gm16381A0A1Y7VKT9 73 aa9.4□□□□□ -0.91
Nup88-201ENSMUST00000035283 FlnaQ8BTM8 2647 aaKnown RBP9.39□□□□□ -0.91
Nup88-201ENSMUST00000035283 7530416G11RikJ3QJX6 159 aa9.39□□□□□ -0.91
Nup88-201ENSMUST00000035283 Acyp1P56376 99 aa9.39□□□□□ -0.91
Nup88-201ENSMUST00000035283 Cystm1Q8K353 104 aa9.39□□□□□ -0.91
Nup88-201ENSMUST00000035283 Hbb-b2P02089 147 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 Ccl21aP84444 133 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 Ccl21bP86792 133 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 Ccl21cP86793 133 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 Krtap16-1A2A5X5 502 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 1810062G17RikG3X8Y2 129 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 Gm7102J3QQ10 178 aa9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 Hectd1Q69ZR2 2618 aaKnown RBP9.38□□□□□ -0.91
Nup88-201ENSMUST00000035283 NipblQ6KCD5 2798 aaKnown RBP9.37□□□□□ -0.91
Nup88-201ENSMUST00000035283 Brwd1Q921C3 2304 aa9.37□□□□□ -0.91
Nup88-201ENSMUST00000035283 Zfp951A0A087WRH0 451 aa9.36□□□□□ -0.91
Nup88-201ENSMUST00000035283 Hist1h4aP62806 103 aaKnown RBP9.36□□□□□ -0.91
Nup88-201ENSMUST00000035283 Igkv4-72A0A0B4J1I4 117 aa9.36□□□□□ -0.91
Nup88-201ENSMUST00000035283 Prh1P05142 261 aa9.36□□□□□ -0.91
Nup88-201ENSMUST00000035283 Dand5Q76LW6 185 aa9.36□□□□□ -0.91
Nup88-201ENSMUST00000035283 Chchd7Q8K2Q5 85 aa9.36□□□□□ -0.91
Nup88-201ENSMUST00000035283 Ighv1-56A0A0A6YXG2 117 aa9.35□□□□□ -0.91
Nup88-201ENSMUST00000035283 Ifitm6A0A1B0GS75 124 aa9.34□□□□□ -0.91
Nup88-201ENSMUST00000035283 Csdc2Q91YQ3 154 aa9.34□□□□□ -0.91
Nup88-201ENSMUST00000035283 Usp9yF8VPU6 2556 aa9.34□□□□□ -0.91
Nup88-201ENSMUST00000035283 Gm5142Q8C5X9 133 aa9.34□□□□□ -0.91
Nup88-201ENSMUST00000035283 Pla2g1bQ9Z0Y2 146 aa9.34□□□□□ -0.91
Nup88-201ENSMUST00000035283 Defa4P28311 92 aa9.33□□□□□ -0.92
Nup88-201ENSMUST00000035283 Klk11Q9QYN3 276 aa9.33□□□□□ -0.92
Nup88-201ENSMUST00000035283 Usp24B1AY13 2617 aaKnown RBP9.33□□□□□ -0.92
Nup88-201ENSMUST00000035283 4930518I15RikQ3V2W7 57 aa9.33□□□□□ -0.92
Nup88-201ENSMUST00000035283 4930535I16RikQ9CUI2 172 aa9.33□□□□□ -0.92
Nup88-201ENSMUST00000035283 Defa7P50705 93 aa9.32□□□□□ -0.92
Nup88-201ENSMUST00000035283 Defb26Q30KN7 186 aa9.32□□□□□ -0.92
Nup88-201ENSMUST00000035283 Naa38Q9D2U5 125 aa9.32□□□□□ -0.92
Nup88-201ENSMUST00000035283 Rpl39lQ9CQD0 51 aa9.31□□□□□ -0.92
Nup88-201ENSMUST00000035283 Ank2Q8C8R3 3898 aa9.31□□□□□ -0.92
Nup88-201ENSMUST00000035283 Col7a1Q63870 2944 aa9.31□□□□□ -0.92
Nup88-201ENSMUST00000035283 Rpl18aP62717 176 aaKnown RBP9.31□□□□□ -0.92
Nup88-201ENSMUST00000035283 Trav13-2A0A075B649 110 aa9.29□□□□□ -0.92
Nup88-201ENSMUST00000035283 Igkv4-53A0A0G2JFC6 119 aa9.29□□□□□ -0.92
Nup88-201ENSMUST00000035283 Defa21Q8C1P2 93 aa9.29□□□□□ -0.92
Nup88-201ENSMUST00000035283 Igkv2-109A0A075B5K6 120 aa9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 2010109I03RikQ9CQ11 111 aa9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 Gm10845Q3UNY9 185 aa9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 Ntn5Q3UQ22 452 aa9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 Smim26Q3V460 107 aa9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 Zfp462B1AWL2 2495 aaKnown RBP9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 Unc79Q0KK59 2596 aa9.28□□□□□ -0.92
Nup88-201ENSMUST00000035283 Lyrm9Q3UN90 78 aa9.27□□□□□ -0.93
Nup88-201ENSMUST00000035283 Klk12B2RVZ0 247 aa9.27□□□□□ -0.93
Nup88-201ENSMUST00000035283 Q9DAA7 145 aa9.27□□□□□ -0.93
Nup88-201ENSMUST00000035283 Odf3l2Q3TZ65 277 aa9.26□□□□□ -0.93
Nup88-201ENSMUST00000035283 Epg5Q80TA9 2572 aa9.26□□□□□ -0.93
Nup88-201ENSMUST00000035283 Gm43218A0A0G2JGT0 114 aa9.26□□□□□ -0.93
Nup88-201ENSMUST00000035283 MifP34884 115 aaKnown RBP9.26□□□□□ -0.93
Nup88-201ENSMUST00000035283 A830031A19RikQ8BNT5 113 aa9.26□□□□□ -0.93
Nup88-201ENSMUST00000035283 Ankrd11E9Q4F7 2643 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 E130208F15RikQ3UPV3 143 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Il19Q8CJ70 176 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Myo18bE9PV66 2605 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Setd2E9Q5F9 2537 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Igkv8-18A0A0B4J1J3 123 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Gm10320E9PW43 113 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 C530025M09RikF6RGA8 229 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Spink4O35679 86 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Gm5153P01627 120 aa9.25□□□□□ -0.93
Nup88-201ENSMUST00000035283 Igkv4-54A0A0G2JES9 117 aa9.24□□□□□ -0.93
Nup88-201ENSMUST00000035283 Serp2Q6TAW2 65 aa9.24□□□□□ -0.93
Retrieved 100 of 22,080 RNA–protein pairs in 93.6 ms