Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm25239-201ENSMUST00000174915 86 ntBASIC35.18■■■■□ 3.22
Col7a1Q63870 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
Col7a1Q63870 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
Col7a1Q63870 Gm24109-201ENSMUST00000175489 103 ntBASIC31.08■■■□□ 2.57
Col7a1Q63870 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Col7a1Q63870 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
Col7a1Q63870 Gm15042-201ENSMUST00000120212 883 ntBASIC29.8■■■□□ 2.36
Col7a1Q63870 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Col7a1Q63870 Gm15045-201ENSMUST00000117359 883 ntBASIC29.28■■■□□ 2.28
Col7a1Q63870 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Col7a1Q63870 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.15■■■□□ 2.26
Col7a1Q63870 Gm23366-201ENSMUST00000175022 89 ntBASIC29.06■■■□□ 2.24
Col7a1Q63870 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Col7a1Q63870 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Col7a1Q63870 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.89■■■□□ 2.21
Col7a1Q63870 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.74■■■□□ 2.19
Col7a1Q63870 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col7a1Q63870 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.25■■■□□ 2.11
Col7a1Q63870 Gm25238-201ENSMUST00000174914 89 ntBASIC28.19■■■□□ 2.1
Col7a1Q63870 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Col7a1Q63870 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Col7a1Q63870 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Col7a1Q63870 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
Col7a1Q63870 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Col7a1Q63870 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
Col7a1Q63870 Gm25262-201ENSMUST00000174934 133 ntBASIC27.4■■□□□ 1.98
Col7a1Q63870 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.19■■□□□ 1.94
Col7a1Q63870 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.03■■□□□ 1.92
Col7a1Q63870 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
Col7a1Q63870 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC26.99■■□□□ 1.91
Col7a1Q63870 Gm26115-201ENSMUST00000175605 87 ntBASIC26.93■■□□□ 1.9
Col7a1Q63870 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.91■■□□□ 1.9
Col7a1Q63870 Gm8109-201ENSMUST00000194076 746 ntBASIC26.7■■□□□ 1.87
Col7a1Q63870 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC26.68■■□□□ 1.86
Col7a1Q63870 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Col7a1Q63870 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col7a1Q63870 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Col7a1Q63870 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Col7a1Q63870 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.54■■□□□ 1.84
Col7a1Q63870 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC26.45■■□□□ 1.82
Col7a1Q63870 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Col7a1Q63870 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC26.28■■□□□ 1.8
Col7a1Q63870 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Col7a1Q63870 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Col7a1Q63870 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col7a1Q63870 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Col7a1Q63870 Gm27325-201ENSMUST00000175467 74 ntBASIC26.15■■□□□ 1.78
Col7a1Q63870 Rab21-202ENSMUST00000218831 843 ntBASIC26.15■■□□□ 1.78
Col7a1Q63870 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.02■■□□□ 1.76
Col7a1Q63870 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Col7a1Q63870 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Col7a1Q63870 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.01■■□□□ 1.75
Col7a1Q63870 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
Col7a1Q63870 Gm24804-201ENSMUST00000174982 85 ntBASIC25.9■■□□□ 1.74
Col7a1Q63870 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC25.88■■□□□ 1.73
Col7a1Q63870 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
Col7a1Q63870 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
Col7a1Q63870 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
Col7a1Q63870 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Col7a1Q63870 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col7a1Q63870 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Col7a1Q63870 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.68■■□□□ 1.7
Col7a1Q63870 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Col7a1Q63870 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Col7a1Q63870 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Col7a1Q63870 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.6■■□□□ 1.69
Col7a1Q63870 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC25.55■■□□□ 1.68
Col7a1Q63870 Gm17082-201ENSMUST00000166043 1091 ntBASIC25.45■■□□□ 1.66
Col7a1Q63870 Zfp131-205ENSMUST00000223812 663 ntBASIC25.45■■□□□ 1.66
Col7a1Q63870 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Col7a1Q63870 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Col7a1Q63870 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Col7a1Q63870 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Col7a1Q63870 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC25.35■■□□□ 1.65
Col7a1Q63870 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
Col7a1Q63870 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Col7a1Q63870 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Col7a1Q63870 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Col7a1Q63870 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC25.23■■□□□ 1.63
Col7a1Q63870 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.2■■□□□ 1.62
Col7a1Q63870 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Col7a1Q63870 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Col7a1Q63870 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC25.14■■□□□ 1.62
Col7a1Q63870 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Col7a1Q63870 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25.06■■□□□ 1.6
Col7a1Q63870 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Col7a1Q63870 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
Col7a1Q63870 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Col7a1Q63870 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC25.04■■□□□ 1.6
Col7a1Q63870 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Col7a1Q63870 Gm27322-201ENSMUST00000184007 104 ntBASIC24.96■■□□□ 1.59
Col7a1Q63870 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Col7a1Q63870 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
Col7a1Q63870 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
Col7a1Q63870 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Col7a1Q63870 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.83■■□□□ 1.57
Col7a1Q63870 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Col7a1Q63870 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Col7a1Q63870 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC24.8■■□□□ 1.56
Col7a1Q63870 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC24.78■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms