RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Trbv13-1A0A0B4J1P8 112 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Iglc1A0A0G2JE99 106 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 P01843 105 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Ndufb4Q9CQC7 129 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Pde6gP09174 87 aa9.28□□□□□ -0.92
Trim56-201ENSMUST00000054384 Rpl39P62892 51 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 9530003J23RikQ8BM26 151 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 Vopp1Q8R1C3 172 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 Tax1bp3Q9DBG9 124 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 Gp9O88186 177 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 Hoxb4P10284 250 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 Fhl3Q9R059 289 aa9.27□□□□□ -0.92
Trim56-201ENSMUST00000054384 Ormdl1Q921I0 153 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 Igkv1-35A0A0G2JDE5 120 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 Reg3bP35230 175 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 Znf672Q99LH4 468 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 P01753 117 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 P04940 107 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 P04941 107 aa9.27□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav12d-3A0A075B6A4 115 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Gm10553J3QPF1 123 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Tmem223Q9CQE2 199 aaKnown RBP9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Tmem254aP0DN89 123 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Tmem254bP0DN90 123 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Tmem254cP0DN91 123 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Igkv3-3A0A140T8Q0 119 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Dmrtc1c1Q9D410 238 aa9.26□□□□□ -0.93
Trim56-201ENSMUST00000054384 Gm26602M0QWA4 95 aa9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 P01630 113 aa9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 Rif1Q6PR54 2419 aaKnown RBP9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 Sox16Q62247 57 aa9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 Rnf138Q9CQE0 245 aaKnown RBP9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 Gm15091B1AZM2 449 aa9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 1700010B08RikQ9DAI7 102 aa9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 LitafQ9JLJ0 161 aa9.25□□□□□ -0.93
Trim56-201ENSMUST00000054384 Tfpi2O35536 230 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 Igkv4-92A0A0B4J1I2 117 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 Cryba4Q9JJV0 196 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 TectaO08523 2155 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav13n-1A0A0G2JEU8 110 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 1700074P13RikQ9D9G7 251 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 Ighv8-12A0A0G2JDE1 119 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 7420426K07RikQ3UX66 186 aa9.24□□□□□ -0.93
Trim56-201ENSMUST00000054384 H2al1aQ5M8Q2 105 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 H2al1eQ810S6 105 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 H2al1bA0A087WP11 105 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Tmem213Q08EA8 116 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Ndufs5Q99LY9 106 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Rpl39lQ9CQD0 51 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Wfdc15bQ9JHY4 80 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Klk9Q32M27 251 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav13n-2A0A0G2JF93 110 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav13d-1A0A075B606 110 aa9.23□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav9n-4A0A075B631 113 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav13-2A0A075B649 110 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Wisp3D3Z5L9 354 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trbv16A0A0B4J1H3 115 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Rspo1Q9Z132 265 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Ccdc179J3QM76 67 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Pkd1l2Q7TN88 2461 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Trav13-4-dv7A0A075B6C2 110 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Nav2E9Q842 2432 aa9.22□□□□□ -0.93
Trim56-201ENSMUST00000054384 Ndufc1Q9CQY9 76 aa9.21□□□□□ -0.93
Trim56-201ENSMUST00000054384 Igkv8-21A0A140T8P7 120 aa9.21□□□□□ -0.93
Trim56-201ENSMUST00000054384 Ighv1-62-1A0A075B5U3 116 aa9.21□□□□□ -0.94
Trim56-201ENSMUST00000054384 CrygcQ61597 174 aa9.21□□□□□ -0.94
Trim56-201ENSMUST00000054384 Hcfc1Q61191 2045 aaKnown RBP9.21□□□□□ -0.94
Trim56-201ENSMUST00000054384 P04942 107 aa9.21□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm17324Q8C6J8 137 aa9.21□□□□□ -0.94
Trim56-201ENSMUST00000054384 Tm2d1Q99MB3 208 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Igf1P05017 153 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Ighv1-53A0A075B5W3 117 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 P01748 117 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Defb18Q30KP5 85 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Wfdc11A2A5H7 82 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm17521F6QAC8 156 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm42674D3YUT9 64 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Higd2aQ9CQJ1 106 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Lrp4Q8VI56 1905 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm10638F6QEG2 257 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 NpyP57774 97 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Cdpf1Q8R3A2 119 aa9.2□□□□□ -0.94
Trim56-201ENSMUST00000054384 Trav13-1A0A075B644 110 aa9.19□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm19684G3UZ45 117 aa9.19□□□□□ -0.94
Trim56-201ENSMUST00000054384 Fancd2osQ9D4K4 178 aa9.19□□□□□ -0.94
Trim56-201ENSMUST00000054384 Iglv1A0A075B663 117 aa9.19□□□□□ -0.94
Trim56-201ENSMUST00000054384 P04945 108 aa9.19□□□□□ -0.94
Trim56-201ENSMUST00000054384 B230359F08RikA0A0B4J1K3 109 aa9.19□□□□□ -0.94
Trim56-201ENSMUST00000054384 Fxyd5P97808 178 aa9.18□□□□□ -0.94
Trim56-201ENSMUST00000054384 P01643 108 aa9.18□□□□□ -0.94
Trim56-201ENSMUST00000054384 Eif4ebp1Q60876 117 aa9.18□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm10542F6XDR3 90 aa9.18□□□□□ -0.94
Trim56-201ENSMUST00000054384 Fam19a4Q7TPG5 135 aa9.17□□□□□ -0.94
Trim56-201ENSMUST00000054384 Fam19a1Q7TPG8 133 aa9.17□□□□□ -0.94
Trim56-201ENSMUST00000054384 Rnf152Q8BG47 203 aa9.17□□□□□ -0.94
Trim56-201ENSMUST00000054384 Ighv1-11A0A0A6YWI9 117 aa9.16□□□□□ -0.94
Trim56-201ENSMUST00000054384 Gm17677B3GLJ5 116 aa9.16□□□□□ -0.94
Trim56-201ENSMUST00000054384 Ndufb1P0DN34 57 aa9.16□□□□□ -0.94
Trim56-201ENSMUST00000054384 Ighv12-3A0A075B5T1 117 aa9.16□□□□□ -0.94
Trim56-201ENSMUST00000054384 1810032O08RikE9PZV8 113 aa9.16□□□□□ -0.94
Retrieved 100 of 22,080 RNA–protein pairs in 67.1 ms