RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ABCC8Q09428 1581 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 HRNRQ86YZ3 2850 aaPredicted RBP0.5□□□□□ -2.33
CD44-239ENST00000639002 LOC730098B7Z3J9 87 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 H0YGX0 51 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 PLNP26678 52 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 CRIP1P50238 77 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 CMC2Q9NRP2 79 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 TMEM167BQ9NRX6 74 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 PKDREJQ9NTG1 2253 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 USF3Q68DE3 2245 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 DMDP11532 3685 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 CDC42BPAQ5VT25 1732 aa0.5□□□□□ -2.33
CD44-239ENST00000639002 LYNX1G3V0Z9 82 aa0.49□□□□□ -2.33
CD44-239ENST00000639002 PRH1P02810 166 aa0.49□□□□□ -2.33
CD44-239ENST00000639002 KRTAP19-6Q3LI70 58 aa0.49□□□□□ -2.33
CD44-239ENST00000639002 MINOS1Q5TGZ0 78 aa0.49□□□□□ -2.33
CD44-239ENST00000639002 DYNC2H1Q8NCM8 4307 aaKnown RBP0.49□□□□□ -2.33
CD44-239ENST00000639002 LRP2P98164 4655 aa0.49□□□□□ -2.33
CD44-239ENST00000639002 DDX60Q8IY21 1712 aaKnown RBP0.48□□□□□ -2.33
CD44-239ENST00000639002 IAPPP10997 89 aa0.48□□□□□ -2.33
CD44-239ENST00000639002 CSMD3Q7Z407 3707 aa0.47□□□□□ -2.33
CD44-239ENST00000639002 IGIPA6NJ69 53 aa0.47□□□□□ -2.33
CD44-239ENST00000639002 C6orf48Q9UBA6 75 aa0.47□□□□□ -2.33
CD44-239ENST00000639002 U3KQA8 63 aa0.47□□□□□ -2.33
CD44-239ENST00000639002 IQGAP2Q13576 1575 aa0.47□□□□□ -2.33
CD44-239ENST00000639002 H0YAA0 97 aa0.46□□□□□ -2.34
CD44-239ENST00000639002 H0YGG7 62 aa0.46□□□□□ -2.34
CD44-239ENST00000639002 H3BUA1 57 aa0.45□□□□□ -2.34
CD44-239ENST00000639002 KRTAP21-1Q3LI58 79 aa0.45□□□□□ -2.34
CD44-239ENST00000639002 ABRACLQ9P1F3 81 aa0.45□□□□□ -2.34
CD44-239ENST00000639002 KNL1Q8NG31 2342 aa0.45□□□□□ -2.34
CD44-239ENST00000639002 STARD9Q9P2P6 4700 aa0.45□□□□□ -2.34
CD44-239ENST00000639002 DNAH7Q8WXX0 4024 aa0.45□□□□□ -2.34
CD44-239ENST00000639002 AGLP35573 1532 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 LMO7Q8WWI1 1683 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 FAM208AQ9UK61 1670 aaKnown RBP0.44□□□□□ -2.34
CD44-239ENST00000639002 DEFB130BP0DP73 79 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 DEFB130AP0DP74 79 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 TOMM5Q8N4H5 51 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 LINC00308Q8TCZ7 52 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 AKAP9Q99996 3911 aa0.44□□□□□ -2.34
CD44-239ENST00000639002 ANK2Q01484 3957 aa0.43□□□□□ -2.34
CD44-239ENST00000639002 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
CD44-239ENST00000639002 DEFB135Q30KP9 77 aa0.43□□□□□ -2.34
CD44-239ENST00000639002 KRTAP19-3Q7Z4W3 81 aa0.43□□□□□ -2.34
CD44-239ENST00000639002 SMR3AQ99954 134 aa0.43□□□□□ -2.34
CD44-239ENST00000639002 TIMM8BQ9Y5J9 83 aaPredicted RBP0.43□□□□□ -2.34
CD44-239ENST00000639002 CMYA5Q8N3K9 4069 aa0.43□□□□□ -2.34
CD44-239ENST00000639002 PKD1P98161 4303 aa0.42□□□□□ -2.34
CD44-239ENST00000639002 SMIM27A0A1W2PRY6 76 aa0.42□□□□□ -2.34
CD44-239ENST00000639002 M0R2T5 61 aa0.42□□□□□ -2.34
CD44-239ENST00000639002 WT1-ASQ06250 92 aa0.42□□□□□ -2.34
CD44-239ENST00000639002 IQGAP1P46940 1657 aa0.42□□□□□ -2.34
CD44-239ENST00000639002 ALMS1Q8TCU4 4167 aa0.42□□□□□ -2.34
CD44-239ENST00000639002 WNK2Q9Y3S1 2297 aa0.41□□□□□ -2.34
CD44-239ENST00000639002 DNAH9Q9NYC9 4486 aa0.41□□□□□ -2.34
CD44-239ENST00000639002 RPS27P42677 84 aaKnown RBP0.4□□□□□ -2.35
CD44-239ENST00000639002 MT4P47944 62 aa0.4□□□□□ -2.35
CD44-239ENST00000639002 RPS27LQ71UM5 84 aaKnown RBP0.4□□□□□ -2.35
CD44-239ENST00000639002 DEFB106AQ8N104 65 aa0.4□□□□□ -2.35
CD44-239ENST00000639002 FAT1Q14517 4588 aa0.4□□□□□ -2.35
CD44-239ENST00000639002 ANK3Q12955 4377 aaKnown RBP0.39□□□□□ -2.35
CD44-239ENST00000639002 LINC01546A6NGU7 62 aa0.39□□□□□ -2.35
CD44-239ENST00000639002 PRLHP81277 87 aa0.39□□□□□ -2.35
CD44-239ENST00000639002 NOP10Q9NPE3 64 aaKnown RBP0.39□□□□□ -2.35
CD44-239ENST00000639002 FAT2Q9NYQ8 4349 aa0.39□□□□□ -2.35
CD44-239ENST00000639002 SPRR2EP22531 72 aa0.38□□□□□ -2.35
CD44-239ENST00000639002 SPRR2BP35325 72 aa0.38□□□□□ -2.35
CD44-239ENST00000639002 SPRR2AP35326 72 aa0.38□□□□□ -2.35
CD44-239ENST00000639002 S4R3F8 94 aa0.38□□□□□ -2.35
CD44-239ENST00000639002 PLECQ15149 4684 aaKnown RBP0.38□□□□□ -2.35
CD44-239ENST00000639002 CLTCL1P53675 1640 aa0.38□□□□□ -2.35
CD44-239ENST00000639002 TRRAPQ9Y4A5 3859 aa0.38□□□□□ -2.35
CD44-239ENST00000639002 SPRR2DP22532 72 aa0.37□□□□□ -2.35
CD44-239ENST00000639002 WFDC10BQ8IUB3 73 aa0.37□□□□□ -2.35
CD44-239ENST00000639002 SMIM2Q9BVW6 85 aa0.37□□□□□ -2.35
CD44-239ENST00000639002 PKHD1L1Q86WI1 4243 aa0.37□□□□□ -2.35
CD44-239ENST00000639002 DNAH5Q8TE73 4624 aa0.36□□□□□ -2.35
CD44-239ENST00000639002 KAAG1Q9UBP8 84 aa0.36□□□□□ -2.35
CD44-239ENST00000639002 TFF3Q07654 80 aa0.35□□□□□ -2.35
CD44-239ENST00000639002 SYNE1Q8NF91 8797 aaKnown RBP0.34□□□□□ -2.35
CD44-239ENST00000639002 TRPM2O94759 1503 aa0.34□□□□□ -2.35
CD44-239ENST00000639002 TOP2AP11388 1531 aaKnown RBP0.34□□□□□ -2.35
CD44-239ENST00000639002 ATP7AQ04656 1500 aa0.34□□□□□ -2.35
CD44-239ENST00000639002 C9orf92A6NGG3 77 aa0.34□□□□□ -2.36
CD44-239ENST00000639002 DEFB131AP59861 70 aa0.34□□□□□ -2.36
CD44-239ENST00000639002 SAMD9LQ8IVG5 1584 aa0.33□□□□□ -2.36
CD44-239ENST00000639002 IGLV5-48A0A075B6I7 105 aa0.33□□□□□ -2.36
CD44-239ENST00000639002 PRM1P04553 51 aa0.33□□□□□ -2.36
CD44-239ENST00000639002 AKAP6Q13023 2319 aa0.33□□□□□ -2.36
CD44-239ENST00000639002 NFAT5O94916 1531 aa0.33□□□□□ -2.36
CD44-239ENST00000639002 HUWE1Q7Z6Z7 4374 aaKnown RBP0.32□□□□□ -2.36
CD44-239ENST00000639002 APOBP04114 4563 aaKnown RBP0.32□□□□□ -2.36
CD44-239ENST00000639002 M0QY20 66 aa0.32□□□□□ -2.36
CD44-239ENST00000639002 NDUFA1O15239 70 aa0.32□□□□□ -2.36
CD44-239ENST00000639002 A8MTW9 85 aa0.31□□□□□ -2.36
CD44-239ENST00000639002 H3BNG1 76 aa0.31□□□□□ -2.36
CD44-239ENST00000639002 LPAP08519 4548 aa0.3□□□□□ -2.36
CD44-239ENST00000639002 MMP24-AS1A0A0U1RRL7 71 aa0.3□□□□□ -2.36
CD44-239ENST00000639002 DNAH10Q8IVF4 4471 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms