RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 AEBP2Q6ZN18 517 aaPredicted RBP28.37■■■□□ 2.13
CD44-239ENST00000639002 CHIC1Q5VXU3 224 aa27.24■■□□□ 1.95
CD44-239ENST00000639002 PHF23Q9BUL5 403 aaPredicted RBP24■■□□□ 1.43
CD44-239ENST00000639002 SENP3Q9H4L4 574 aaPredicted RBP23.99■■□□□ 1.43
CD44-239ENST00000639002 FOXD1Q16676 465 aa22.41■■□□□ 1.18
CD44-239ENST00000639002 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
CD44-239ENST00000639002 PPP6R1Q9UPN7 881 aa21.32■■□□□ 1
CD44-239ENST00000639002 ADRA2BP18089 450 aa21.23■□□□□ 0.99
CD44-239ENST00000639002 PIAS4Q8N2W9 510 aaPredicted RBP20.96■□□□□ 0.95
CD44-239ENST00000639002 MSH5O43196 834 aa20.71■□□□□ 0.91
CD44-239ENST00000639002 POTEDQ86YR6 584 aa19.65■□□□□ 0.74
CD44-239ENST00000639002 MAPK8IP2Q13387 824 aaPredicted RBP19.41■□□□□ 0.7
CD44-239ENST00000639002 SCAF1Q9H7N4 1312 aaKnown RBP19.27■□□□□ 0.68
CD44-239ENST00000639002 PPP4R3CPQ6ZMV5 832 aa19.27■□□□□ 0.68
CD44-239ENST00000639002 DMRT2Q9Y5R5 561 aa19.14■□□□□ 0.65
CD44-239ENST00000639002 CNKSR2Q8WXI2 1034 aa18.8■□□□□ 0.6
CD44-239ENST00000639002 HOXD11P31277 338 aaPredicted RBP18.6■□□□□ 0.57
CD44-239ENST00000639002 NCBP3Q53F19 620 aaKnown RBP18.56■□□□□ 0.56
CD44-239ENST00000639002 RNF216Q9NWF9 866 aaPredicted RBP18.53■□□□□ 0.56
CD44-239ENST00000639002 NPM3O75607 178 aaKnown RBP18.41■□□□□ 0.54
CD44-239ENST00000639002 KCNA4P22459 653 aa18.41■□□□□ 0.54
CD44-239ENST00000639002 DCAF8L1A6NGE4 600 aa18.25■□□□□ 0.51
CD44-239ENST00000639002 DNAJC5BQ9UF47 199 aa17.93■□□□□ 0.46
CD44-239ENST00000639002 RNF39Q9H2S5 420 aa17.78■□□□□ 0.44
CD44-239ENST00000639002 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.65■□□□□ 0.42
CD44-239ENST00000639002 CACNB1Q02641 598 aaPredicted RBP17.55■□□□□ 0.4
CD44-239ENST00000639002 SLC4A2P04920 1241 aa17.52■□□□□ 0.4
CD44-239ENST00000639002 C1QBPQ07021 282 aaKnown RBP17.49■□□□□ 0.39
CD44-239ENST00000639002 U3KPZ7 1027 aaPredicted RBP17.41■□□□□ 0.38
CD44-239ENST00000639002 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
CD44-239ENST00000639002 SPINK5Q9NQ38 1064 aaPredicted RBP17.05■□□□□ 0.32
CD44-239ENST00000639002 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
CD44-239ENST00000639002 ZBTB22O15209 634 aa16.98■□□□□ 0.31
CD44-239ENST00000639002 MYCNP04198 464 aaPredicted RBP16.94■□□□□ 0.3
CD44-239ENST00000639002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.91■□□□□ 0.3
CD44-239ENST00000639002 CAPN15O75808 1086 aa16.91■□□□□ 0.3
CD44-239ENST00000639002 HNRNPUL2Q1KMD3 747 aaKnown RBP16.91■□□□□ 0.3
CD44-239ENST00000639002 SAMD1Q6SPF0 538 aaPredicted RBP16.86■□□□□ 0.29
CD44-239ENST00000639002 DSG3P32926 999 aa16.8■□□□□ 0.28
CD44-239ENST00000639002 APLP2Q06481 763 aa16.78■□□□□ 0.28
CD44-239ENST00000639002 TRHP20396 242 aaPredicted RBP16.75■□□□□ 0.27
CD44-239ENST00000639002 ZNF219Q9P2Y4 722 aaPredicted RBP16.69■□□□□ 0.26
CD44-239ENST00000639002 ATF5Q9Y2D1 282 aaPredicted RBP16.65■□□□□ 0.26
CD44-239ENST00000639002 ABCB7O75027 752 aa16.6■□□□□ 0.25
CD44-239ENST00000639002 CSRNP3Q8WYN3 585 aa16.53■□□□□ 0.24
CD44-239ENST00000639002 EHMT2Q96KQ7 1210 aa16.45■□□□□ 0.22
CD44-239ENST00000639002 ATXN8OSP0DMR3 200 aa16.42■□□□□ 0.22
CD44-239ENST00000639002 POLA2Q14181 598 aa16.42■□□□□ 0.22
CD44-239ENST00000639002 ZBTB12Q9Y330 459 aaPredicted RBP16■□□□□ 0.15
CD44-239ENST00000639002 MKRN4PQ13434 485 aaPredicted RBP15.89■□□□□ 0.13
CD44-239ENST00000639002 RBM42Q9BTD8 480 aaKnown RBP15.89■□□□□ 0.13
CD44-239ENST00000639002 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
CD44-239ENST00000639002 FBLN2P98095 1184 aa15.8■□□□□ 0.12
CD44-239ENST00000639002 AKT1S1Q96B36 256 aa15.67■□□□□ 0.1
CD44-239ENST00000639002 SPDYE2BA6NHP3 402 aa15.61■□□□□ 0.09
CD44-239ENST00000639002 SPDYE6P0CI01 402 aa15.61■□□□□ 0.09
CD44-239ENST00000639002 SPDYE2Q495Y8 402 aa15.61■□□□□ 0.09
CD44-239ENST00000639002 REM2Q8IYK8 340 aaPredicted RBP15.56■□□□□ 0.08
CD44-239ENST00000639002 ZNF692Q9BU19 519 aaPredicted RBP15.5■□□□□ 0.07
CD44-239ENST00000639002 SSUH2Q9Y2M2 353 aa15.5■□□□□ 0.07
CD44-239ENST00000639002 CHRDL2Q6WN34 429 aa15.46■□□□□ 0.07
CD44-239ENST00000639002 POTEHQ6S545 545 aa15.44■□□□□ 0.06
CD44-239ENST00000639002 PITPNM1O00562 1244 aa15.39■□□□□ 0.05
CD44-239ENST00000639002 PABPN1Q86U42 306 aaKnown RBP eCLIP15.3■□□□□ 0.04
CD44-239ENST00000639002 SPDYE4A6NLX3 237 aa15.25■□□□□ 0.03
CD44-239ENST00000639002 PIP4P2Q8N4L2 257 aa15.22■□□□□ 0.03
CD44-239ENST00000639002 SPDYE1Q8NFV5 336 aaPredicted RBP15.22■□□□□ 0.03
CD44-239ENST00000639002 FXR2P51116 673 aaKnown RBP eCLIP15.2■□□□□ 0.02
CD44-239ENST00000639002 CLEC11AQ9Y240 323 aa15.19■□□□□ 0.02
CD44-239ENST00000639002 PROM2Q8N271 834 aa15.01□□□□□ -0.01
CD44-239ENST00000639002 PRR29P0C7W0 189 aa15□□□□□ -0.01
CD44-239ENST00000639002 PRKAR2AP13861 404 aaKnown RBP14.97□□□□□ -0.01
CD44-239ENST00000639002 CHADLQ6NUI6 762 aa14.93□□□□□ -0.02
CD44-239ENST00000639002 FKBP8Q14318 412 aa14.9□□□□□ -0.02
CD44-239ENST00000639002 STAG3Q9UJ98 1225 aa14.89□□□□□ -0.03
CD44-239ENST00000639002 CREBZFQ9NS37 354 aa14.8□□□□□ -0.04
CD44-239ENST00000639002 HAX1O00165 279 aa14.78□□□□□ -0.04
CD44-239ENST00000639002 EVX2Q03828 476 aa14.77□□□□□ -0.05
CD44-239ENST00000639002 FARP1Q9Y4F1 1045 aaPredicted RBP14.72□□□□□ -0.05
CD44-239ENST00000639002 C19orf67A6NJJ6 358 aa14.69□□□□□ -0.06
CD44-239ENST00000639002 SP7Q8TDD2 431 aaPredicted RBP14.65□□□□□ -0.06
CD44-239ENST00000639002 MNX1P50219 401 aaPredicted RBP14.62□□□□□ -0.07
CD44-239ENST00000639002 CD44P16070 742 aaKnown RBP14.51□□□□□ -0.09
CD44-239ENST00000639002 MIER1Q8N108 512 aa14.49□□□□□ -0.09
CD44-239ENST00000639002 NPM1P06748 294 aaKnown RBP eCLIP14.42□□□□□ -0.1
CD44-239ENST00000639002 FBXO3Q9UK99 471 aa14.4□□□□□ -0.1
CD44-239ENST00000639002 GABBR2O75899 941 aa14.38□□□□□ -0.11
CD44-239ENST00000639002 PLCD3Q8N3E9 789 aa14.38□□□□□ -0.11
CD44-239ENST00000639002 ZRANB1Q9UGI0 708 aa14.37□□□□□ -0.11
CD44-239ENST00000639002 PLEKHG5O94827 1062 aa14.32□□□□□ -0.12
CD44-239ENST00000639002 ZNF579Q8NAF0 562 aaKnown RBP14.32□□□□□ -0.12
CD44-239ENST00000639002 VASPP50552 380 aaPredicted RBP14.28□□□□□ -0.12
CD44-239ENST00000639002 RASEFQ8IZ41 740 aa14.25□□□□□ -0.13
CD44-239ENST00000639002 PHF12Q96QT6 1004 aa14.24□□□□□ -0.13
CD44-239ENST00000639002 PAK3O75914 559 aaPredicted RBP14.23□□□□□ -0.13
CD44-239ENST00000639002 NUBP1P53384 320 aa14.23□□□□□ -0.13
CD44-239ENST00000639002 TSPYL2Q9H2G4 693 aaPredicted RBP14.23□□□□□ -0.13
CD44-239ENST00000639002 ZBTB47Q9UFB7 747 aaPredicted RBP14.2□□□□□ -0.14
CD44-239ENST00000639002 CCDC61Q9Y6R9 512 aa14.19□□□□□ -0.14
CD44-239ENST00000639002 CLCN6P51797 869 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms