RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	PRKDC	P78527	4128 aa	Known RBP	0.8	□□□□□ -2.28
CNOT1-223	ENST00000628857	UTP20	O75691	2785 aa	Known RBP	0.8	□□□□□ -2.28
CNOT1-223	ENST00000628857	MYCBP2	O75592	4640 aa		0.8	□□□□□ -2.28
CNOT1-223	ENST00000628857	FRAS1	Q86XX4	4008 aa		0.8	□□□□□ -2.28
CNOT1-223	ENST00000628857	ACAN	P16112	2415 aa		0.79	□□□□□ -2.28
CNOT1-223	ENST00000628857	SACS	Q9NZJ4	4579 aa		0.79	□□□□□ -2.28
CNOT1-223	ENST00000628857	CFAP46	Q8IYW2	2715 aa		0.79	□□□□□ -2.28
CNOT1-223	ENST00000628857	DNAH8	Q96JB1	4490 aa		0.79	□□□□□ -2.28
CNOT1-223	ENST00000628857	DMD	P11532	3685 aa		0.79	□□□□□ -2.28
CNOT1-223	ENST00000628857	NIPBL	Q6KC79	2804 aa	eCLIP	0.79	□□□□□ -2.28
CNOT1-223	ENST00000628857	TACC2	O95359	2948 aa		0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	CENPE	Q02224	2701 aa		0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	CSMD1	Q96PZ7	3565 aa		0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	ZAN	Q9Y493	2812 aa		0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	SMG1	Q96Q15	3661 aa	Known RBP	0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	SPTBN5	Q9NRC6	3674 aa	Known RBP	0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	KRTAP8-1	Q8IUC2	63 aa		0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857		U3KQA8	63 aa		0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	DYNC2H1	Q8NCM8	4307 aa	Known RBP	0.78	□□□□□ -2.28
CNOT1-223	ENST00000628857	FLG	P20930	4061 aa	Predicted RBP	0.78	□□□□□ -2.29
CNOT1-223	ENST00000628857	TNXB	P22105	4242 aa		0.78	□□□□□ -2.29
CNOT1-223	ENST00000628857	ACACB	O00763	2458 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	TG	P01266	2768 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	NBEAL2	Q6ZNJ1	2754 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	PKD1L1	Q8TDX9	2849 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	LAMA1	P25391	3075 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	LOC400499	M0QZD8	3231 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	MUC3A	Q02505	3323 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	PRM1	P04553	51 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	DOPEY1	Q5JWR5	2465 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	LAMA5	O15230	3695 aa		0.77	□□□□□ -2.29
CNOT1-223	ENST00000628857	PKHD1L1	Q86WI1	4243 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	UTRN	P46939	3433 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	ANKRD11	Q6UB99	2663 aa	Predicted RBP	0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	NOTCH1	P46531	2555 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	MYO18B	Q8IUG5	2567 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	STAB1	Q9NY15	2570 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	HECTD4	Q9Y4D8	3996 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	TEP1	Q99973	2627 aa	Known RBP	0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	FAT2	Q9NYQ8	4349 aa		0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	USP9X	Q93008	2570 aa	Predicted RBP	0.76	□□□□□ -2.29
CNOT1-223	ENST00000628857	NSD1	Q96L73	2696 aa	Predicted RBP	0.75	□□□□□ -2.29
CNOT1-223	ENST00000628857	TLN2	Q9Y4G6	2542 aa		0.75	□□□□□ -2.29
CNOT1-223	ENST00000628857	LAMA3	Q16787	3333 aa		0.75	□□□□□ -2.29
CNOT1-223	ENST00000628857	DEFB4A	O15263	64 aa		0.75	□□□□□ -2.29
CNOT1-223	ENST00000628857	CUBN	O60494	3623 aa		0.75	□□□□□ -2.29
CNOT1-223	ENST00000628857	MXRA5	Q9NR99	2828 aa		0.74	□□□□□ -2.29
CNOT1-223	ENST00000628857	HIVEP1	P15822	2718 aa		0.74	□□□□□ -2.29
CNOT1-223	ENST00000628857	EP400	Q96L91	3159 aa		0.74	□□□□□ -2.29
CNOT1-223	ENST00000628857	ZFYVE26	Q68DK2	2539 aa		0.74	□□□□□ -2.29
CNOT1-223	ENST00000628857	DNAH2	Q9P225	4427 aa		0.73	□□□□□ -2.29
CNOT1-223	ENST00000628857	UNC79	Q9P2D8	2635 aa		0.73	□□□□□ -2.29
CNOT1-223	ENST00000628857	CMYA5	Q8N3K9	4069 aa		0.73	□□□□□ -2.29
CNOT1-223	ENST00000628857	ANK3	Q12955	4377 aa	Known RBP	0.73	□□□□□ -2.29
CNOT1-223	ENST00000628857	TEX15	Q9BXT5	2789 aa		0.73	□□□□□ -2.29
CNOT1-223	ENST00000628857	ITPR2	Q14571	2701 aa		0.73	□□□□□ -2.29
CNOT1-223	ENST00000628857	TRRAP	Q9Y4A5	3859 aa		0.72	□□□□□ -2.29
CNOT1-223	ENST00000628857	CSMD2	Q7Z408	3487 aa		0.72	□□□□□ -2.29
CNOT1-223	ENST00000628857	ASPM	Q8IZT6	3477 aa		0.72	□□□□□ -2.29
CNOT1-223	ENST00000628857	FLNA	P21333	2647 aa	Known RBP	0.72	□□□□□ -2.29
CNOT1-223	ENST00000628857	USP34	Q70CQ2	3546 aa		0.72	□□□□□ -2.29
CNOT1-223	ENST00000628857	TENM3	Q9P273	2699 aa		0.71	□□□□□ -2.29
CNOT1-223	ENST00000628857	DNAH6	Q9C0G6	4158 aa		0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	LAMA2	P24043	3122 aa	Known RBP	0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	ADGRG4	Q8IZF6	3080 aa		0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	TLN1	Q9Y490	2541 aa	Known RBP	0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	SPTAN1	Q13813	2472 aa	Known RBP	0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	CENPF	P49454	3210 aa		0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	SVEP1	Q4LDE5	3571 aa		0.71	□□□□□ -2.3
CNOT1-223	ENST00000628857	PCNT	O95613	3336 aa		0.7	□□□□□ -2.3
CNOT1-223	ENST00000628857	DNAH1	Q9P2D7	4330 aa		0.7	□□□□□ -2.3
CNOT1-223	ENST00000628857	SMR3B	P02814	79 aa	Predicted RBP	0.7	□□□□□ -2.3
CNOT1-223	ENST00000628857	KRTAP5-10	Q6L8G5	202 aa		0.7	□□□□□ -2.3
CNOT1-223	ENST00000628857	HSPG2	P98160	4391 aa		0.7	□□□□□ -2.3
CNOT1-223	ENST00000628857	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.7	□□□□□ -2.3
CNOT1-223	ENST00000628857	NBEAL1	Q6ZS30	2694 aa		0.69	□□□□□ -2.3
CNOT1-223	ENST00000628857	PKD1	P98161	4303 aa		0.69	□□□□□ -2.3
CNOT1-223	ENST00000628857	FLNB	O75369	2602 aa	Known RBP	0.69	□□□□□ -2.3
CNOT1-223	ENST00000628857	VCAN	P13611	3396 aa		0.68	□□□□□ -2.3
CNOT1-223	ENST00000628857	STAB2	Q8WWQ8	2551 aa		0.68	□□□□□ -2.3
CNOT1-223	ENST00000628857	DNAH10	Q8IVF4	4471 aa		0.68	□□□□□ -2.3
CNOT1-223	ENST00000628857	FASN	P49327	2511 aa	Known RBP	0.68	□□□□□ -2.3
CNOT1-223	ENST00000628857	CEP295	Q9C0D2	2601 aa		0.67	□□□□□ -2.3
CNOT1-223	ENST00000628857	FAT3	Q8TDW7	4589 aa		0.67	□□□□□ -2.3
CNOT1-223	ENST00000628857	KRTAP19-3	Q7Z4W3	81 aa		0.66	□□□□□ -2.3
CNOT1-223	ENST00000628857	PKHD1	P08F94	4074 aa		0.66	□□□□□ -2.3
CNOT1-223	ENST00000628857	MUC16	Q8WXI7	14507 aa		0.66	□□□□□ -2.3
CNOT1-223	ENST00000628857	MGAM2	Q2M2H8	2515 aa		0.66	□□□□□ -2.3
CNOT1-223	ENST00000628857	LRP1	Q07954	4544 aa	Known RBP	0.65	□□□□□ -2.31
CNOT1-223	ENST00000628857	MT1A	P04731	61 aa		0.65	□□□□□ -2.31
CNOT1-223	ENST00000628857	KRTAP19-5	Q3LI72	72 aa		0.65	□□□□□ -2.31
CNOT1-223	ENST00000628857	EYS	Q5T1H1	3165 aa		0.65	□□□□□ -2.31
CNOT1-223	ENST00000628857	DNAH9	Q9NYC9	4486 aa		0.64	□□□□□ -2.31
CNOT1-223	ENST00000628857	MYO15A	Q9UKN7	3530 aa		0.64	□□□□□ -2.31
CNOT1-223	ENST00000628857	SPRR2D	P22532	72 aa		0.64	□□□□□ -2.31
CNOT1-223	ENST00000628857	VPS13C	Q709C8	3753 aa		0.63	□□□□□ -2.31
CNOT1-223	ENST00000628857	UNC80	Q8N2C7	3258 aa		0.63	□□□□□ -2.31
CNOT1-223	ENST00000628857	MAST4	O15021	2626 aa		0.63	□□□□□ -2.31
CNOT1-223	ENST00000628857	SPRR2B	P35325	72 aa		0.63	□□□□□ -2.31

Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms