RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 DYNC1H1Q14204 4646 aaKnown RBP6.39□□□□□ -1.39
MSH6-215ENST00000622629 DNAH7Q8WXX0 4024 aa6.38□□□□□ -1.39
MSH6-215ENST00000622629 LRP1BQ9NZR2 4599 aa6.37□□□□□ -1.39
MSH6-215ENST00000622629 DNAH17Q9UFH2 4485 aa6.37□□□□□ -1.39
MSH6-215ENST00000622629 KIAA1109Q2LD37 5005 aa6.36□□□□□ -1.39
MSH6-215ENST00000622629 HYDINQ4G0P3 5121 aa6.36□□□□□ -1.39
MSH6-215ENST00000622629 DNAH8Q96JB1 4490 aa6.35□□□□□ -1.39
MSH6-215ENST00000622629 KRTAP10-6P60371 365 aaPredicted RBP6.34□□□□□ -1.39
MSH6-215ENST00000622629 KRTAP13-4Q3LI77 160 aa6.34□□□□□ -1.39
MSH6-215ENST00000622629 DYNC2H1Q8NCM8 4307 aaKnown RBP6.33□□□□□ -1.4
MSH6-215ENST00000622629 KRTAP12-2P59991 146 aa6.32□□□□□ -1.4
MSH6-215ENST00000622629 SACSQ9NZJ4 4579 aa6.32□□□□□ -1.4
MSH6-215ENST00000622629 KMT2CQ8NEZ4 4911 aaKnown RBP6.31□□□□□ -1.4
MSH6-215ENST00000622629 MT1HL1P0DM35 61 aa6.31□□□□□ -1.4
MSH6-215ENST00000622629 DNAH2Q9P225 4427 aa6.3□□□□□ -1.4
MSH6-215ENST00000622629 RYR3Q15413 4870 aa6.28□□□□□ -1.4
MSH6-215ENST00000622629 PLAC4Q8WY50 150 aa6.28□□□□□ -1.4
MSH6-215ENST00000622629 RYR2Q92736 4967 aa6.26□□□□□ -1.41
MSH6-215ENST00000622629 RYR1P21817 5038 aa6.25□□□□□ -1.41
MSH6-215ENST00000622629 KRTAP3-3Q9BYR6 98 aa6.25□□□□□ -1.41
MSH6-215ENST00000622629 KRTAP12-1P59990 96 aa6.24□□□□□ -1.41
MSH6-215ENST00000622629 FRAS1Q86XX4 4008 aa6.21□□□□□ -1.41
MSH6-215ENST00000622629 DNAH6Q9C0G6 4158 aa6.2□□□□□ -1.42
MSH6-215ENST00000622629 KRTAP3-2Q9BYR7 98 aa6.2□□□□□ -1.42
MSH6-215ENST00000622629 TNP1P09430 55 aa6.17□□□□□ -1.42
MSH6-215ENST00000622629 FAT2Q9NYQ8 4349 aa6.15□□□□□ -1.42
MSH6-215ENST00000622629 PKHD1P08F94 4074 aa6.15□□□□□ -1.42
MSH6-215ENST00000622629 KRTAP17-1Q9BYP8 105 aa6.15□□□□□ -1.43
MSH6-215ENST00000622629 VPS13BQ7Z7G8 4022 aa6.13□□□□□ -1.43
MSH6-215ENST00000622629 APOBP04114 4563 aaKnown RBP6.12□□□□□ -1.43
MSH6-215ENST00000622629 HECTD4Q9Y4D8 3996 aa6.1□□□□□ -1.43
MSH6-215ENST00000622629 MYCBP2O75592 4640 aa6.08□□□□□ -1.44
MSH6-215ENST00000622629 PP632Q6XCG6 107 aa6.05□□□□□ -1.44
MSH6-215ENST00000622629 LRP1Q07954 4544 aaKnown RBP6.05□□□□□ -1.44
MSH6-215ENST00000622629 EPPK1P58107 5090 aaKnown RBP6.01□□□□□ -1.45
MSH6-215ENST00000622629 KRTAP10-10P60014 251 aa5.99□□□□□ -1.45
MSH6-215ENST00000622629 HERC2O95714 4834 aa5.97□□□□□ -1.45
MSH6-215ENST00000622629 KRTAP23-1A1A580 65 aa5.95□□□□□ -1.46
MSH6-215ENST00000622629 FAT3Q8TDW7 4589 aa5.95□□□□□ -1.46
MSH6-215ENST00000622629 PKD1P98161 4303 aa5.93□□□□□ -1.46
MSH6-215ENST00000622629 BIRC6Q9NR09 4857 aa5.93□□□□□ -1.46
MSH6-215ENST00000622629 KRTAP15-1Q3LI76 137 aa5.93□□□□□ -1.46
MSH6-215ENST00000622629 HSPG2P98160 4391 aa5.91□□□□□ -1.46
MSH6-215ENST00000622629 LORP23490 312 aaPredicted RBP5.86□□□□□ -1.47
MSH6-215ENST00000622629 PRO2289Q9P1D8 64 aa5.83□□□□□ -1.48
MSH6-215ENST00000622629 ABCA13Q86UQ4 5058 aa5.76□□□□□ -1.49
MSH6-215ENST00000622629 KRTAP4-1Q9BYQ7 146 aa5.75□□□□□ -1.49
MSH6-215ENST00000622629 LRP2P98164 4655 aa5.7□□□□□ -1.5
MSH6-215ENST00000622629 LPAP08519 4548 aa5.58□□□□□ -1.52
MSH6-215ENST00000622629 INE1O15225 51 aa5.57□□□□□ -1.52
MSH6-215ENST00000622629 PCLOQ9Y6V0 5065 aa5.53□□□□□ -1.52
MSH6-215ENST00000622629 HERC1Q15751 4861 aa5.53□□□□□ -1.52
MSH6-215ENST00000622629 PKHD1L1Q86WI1 4243 aa5.5□□□□□ -1.53
MSH6-215ENST00000622629 TNXBP22105 4242 aa5.47□□□□□ -1.53
MSH6-215ENST00000622629 LCE3AQ5TA76 89 aa5.39□□□□□ -1.55
MSH6-215ENST00000622629 MT1HP80294 61 aa5.38□□□□□ -1.55
MSH6-215ENST00000622629 KRTAP10-12P60413 245 aa5.35□□□□□ -1.55
MSH6-215ENST00000622629 RNF213Q63HN8 5207 aa5.34□□□□□ -1.55
MSH6-215ENST00000622629 UBR4Q5T4S7 5183 aa5.32□□□□□ -1.56
MSH6-215ENST00000622629 MUC2Q02817 5179 aa5.28□□□□□ -1.56
MSH6-215ENST00000622629 KRTAP12-3P60328 96 aa5.28□□□□□ -1.56
MSH6-215ENST00000622629 MT2AP02795 61 aa5.27□□□□□ -1.57
MSH6-215ENST00000622629 SPRR2GQ9BYE4 73 aa5.27□□□□□ -1.57
MSH6-215ENST00000622629 MT1FP04733 61 aa5.24□□□□□ -1.57
MSH6-215ENST00000622629 HMCN2Q8NDA2 5059 aa5.23□□□□□ -1.57
MSH6-215ENST00000622629 KRTAP19-1Q8IUB9 90 aa5.17□□□□□ -1.58
MSH6-215ENST00000622629 LCE2CQ5TA81 110 aa5.16□□□□□ -1.58
MSH6-215ENST00000622629 FAT4Q6V0I7 4981 aa5.13□□□□□ -1.59
MSH6-215ENST00000622629 KRTAP19-2Q3LHN2 52 aa5.11□□□□□ -1.59
MSH6-215ENST00000622629 FSIP2Q5CZC0 6907 aa5.06□□□□□ -1.6
MSH6-215ENST00000622629 MUC17Q685J3 4493 aa5.04□□□□□ -1.6
MSH6-215ENST00000622629 KRTAP9-8Q9BYQ0 159 aa4.99□□□□□ -1.61
MSH6-215ENST00000622629 KRTAP8-1Q8IUC2 63 aa4.99□□□□□ -1.61
MSH6-215ENST00000622629 FLGP20930 4061 aaPredicted RBP4.96□□□□□ -1.62
MSH6-215ENST00000622629 KRTAP19-8Q3LI54 63 aa4.96□□□□□ -1.62
MSH6-215ENST00000622629 KRTAP10-7P60409 375 aaPredicted RBP4.92□□□□□ -1.62
MSH6-215ENST00000622629 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
MSH6-215ENST00000622629 MT1BP07438 61 aa4.91□□□□□ -1.62
MSH6-215ENST00000622629 MT1XP80297 61 aa4.91□□□□□ -1.62
MSH6-215ENST00000622629 KRTAP10-5P60370 271 aa4.88□□□□□ -1.63
MSH6-215ENST00000622629 KRTAP19-5Q3LI72 72 aa4.88□□□□□ -1.63
MSH6-215ENST00000622629 KRTAP9-3Q9BYQ3 159 aa4.82□□□□□ -1.64
MSH6-215ENST00000622629 LCE2AQ5TA79 106 aaPredicted RBP4.8□□□□□ -1.64
MSH6-215ENST00000622629 SPRR5A0A1B0GTR4 108 aa4.78□□□□□ -1.64
MSH6-215ENST00000622629 LCE2BO14633 110 aa4.75□□□□□ -1.65
MSH6-215ENST00000622629 LCE3CQ5T5A8 94 aa4.75□□□□□ -1.65
MSH6-215ENST00000622629 KRTAP4-8A0A0G2JLE6 195 aa4.71□□□□□ -1.66
MSH6-215ENST00000622629 KRTAP4-8Q9BYQ9 185 aa4.71□□□□□ -1.66
MSH6-215ENST00000622629 KRTAP9-2Q9BYQ4 174 aa4.6□□□□□ -1.67
MSH6-215ENST00000622629 USH2AO75445 5202 aa4.58□□□□□ -1.68
MSH6-215ENST00000622629 OBSCNQ5VST9 7968 aa4.55□□□□□ -1.68
MSH6-215ENST00000622629 SPRR2FQ96RM1 72 aa4.54□□□□□ -1.68
MSH6-215ENST00000622629 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
MSH6-215ENST00000622629 SYNE1Q8NF91 8797 aaKnown RBP4.44□□□□□ -1.7
MSH6-215ENST00000622629 LCE2DQ5TA82 110 aaPredicted RBP4.4□□□□□ -1.7
MSH6-215ENST00000622629 KRTAP19-4Q3LI73 84 aa4.38□□□□□ -1.71
MSH6-215ENST00000622629 KRTAP19-6Q3LI70 58 aa4.37□□□□□ -1.71
MSH6-215ENST00000622629 MT1GP13640 62 aa4.37□□□□□ -1.71
MSH6-215ENST00000622629 MT1LQ93083 61 aa4.33□□□□□ -1.72
MSH6-215ENST00000622629 MT1EP04732 61 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms