RNA–Protein interactions for RNA: ENST00000617930.1

CNOT3-209, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,047 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-209ENST00000617930 SEC61GP60059 68 aa9.44□□□□□ -0.9
CNOT3-209ENST00000617930 LPAP08519 4548 aa9.33□□□□□ -0.92
CNOT3-209ENST00000617930 UQCR11O14957 56 aa9.31□□□□□ -0.92
CNOT3-209ENST00000617930 SPATA8Q6RVD6 105 aa9.3□□□□□ -0.92
CNOT3-209ENST00000617930 MIR22HGQ0VDD5 57 aa9.29□□□□□ -0.92
CNOT3-209ENST00000617930 J3QL48 77 aa9.25□□□□□ -0.93
CNOT3-209ENST00000617930 XP32Q5T750 250 aa9.24□□□□□ -0.93
CNOT3-209ENST00000617930 RBM12B-AS1Q9P1G2 102 aa9.24□□□□□ -0.93
CNOT3-209ENST00000617930 LRP2P98164 4655 aa9.23□□□□□ -0.93
CNOT3-209ENST00000617930 HERC1Q15751 4861 aa9.23□□□□□ -0.93
CNOT3-209ENST00000617930 KRTAP3-1Q9BYR8 98 aa9.22□□□□□ -0.93
CNOT3-209ENST00000617930 RPL37P61927 97 aaKnown RBP9.19□□□□□ -0.94
CNOT3-209ENST00000617930 TPRXLQ17RH7 258 aa9.12□□□□□ -0.95
CNOT3-209ENST00000617930 HMCN2Q8NDA2 5059 aa9.09□□□□□ -0.95
CNOT3-209ENST00000617930 PRAC1Q96KF2 57 aa9.07□□□□□ -0.96
CNOT3-209ENST00000617930 ADM2Q7Z4H4 148 aa9.04□□□□□ -0.96
CNOT3-209ENST00000617930 COX6B2Q6YFQ2 88 aa9.02□□□□□ -0.97
CNOT3-209ENST00000617930 H0YAA0 97 aa8.96□□□□□ -0.98
CNOT3-209ENST00000617930 A0A1B0GU33 70 aa8.95□□□□□ -0.98
CNOT3-209ENST00000617930 H1FX-AS1Q4G0G2 97 aa8.93□□□□□ -0.98
CNOT3-209ENST00000617930 MUC17Q685J3 4493 aa8.92□□□□□ -0.98
CNOT3-209ENST00000617930 KRTAP3-3Q9BYR6 98 aa8.85□□□□□ -0.99
CNOT3-209ENST00000617930 KRTAP4-1Q9BYQ7 146 aa8.85□□□□□ -0.99
CNOT3-209ENST00000617930 CSAG1Q6PB30 78 aa8.82□□□□□ -1
CNOT3-209ENST00000617930 LINC01554Q52M75 96 aa8.79□□□□□ -1
CNOT3-209ENST00000617930 MUC2Q02817 5179 aa8.78□□□□□ -1
CNOT3-209ENST00000617930 UBR4Q5T4S7 5183 aa8.74□□□□□ -1.01
CNOT3-209ENST00000617930 SEC61BP60468 96 aaKnown RBP8.73□□□□□ -1.01
CNOT3-209ENST00000617930 K7ERS5 55 aa8.73□□□□□ -1.01
CNOT3-209ENST00000617930 S4R3F8 94 aa8.7□□□□□ -1.02
CNOT3-209ENST00000617930 RNF213Q63HN8 5207 aa8.66□□□□□ -1.02
CNOT3-209ENST00000617930 KRTAP10-6P60371 365 aaPredicted RBP8.62□□□□□ -1.03
CNOT3-209ENST00000617930 KRTAP3-2Q9BYR7 98 aa8.61□□□□□ -1.03
CNOT3-209ENST00000617930 KRTAP19-2Q3LHN2 52 aa8.59□□□□□ -1.03
CNOT3-209ENST00000617930 KRTAP25-1Q3LHN0 102 aa8.59□□□□□ -1.03
CNOT3-209ENST00000617930 KRTAP13-4Q3LI77 160 aa8.54□□□□□ -1.04
CNOT3-209ENST00000617930 A0A0D9SG42 100 aa8.53□□□□□ -1.04
CNOT3-209ENST00000617930 P0C880 135 aa8.49□□□□□ -1.05
CNOT3-209ENST00000617930 ROMO1P60602 79 aa8.48□□□□□ -1.05
CNOT3-209ENST00000617930 CRIPTQ9P021 101 aa8.45□□□□□ -1.06
CNOT3-209ENST00000617930 FAT4Q6V0I7 4981 aa8.44□□□□□ -1.06
CNOT3-209ENST00000617930 FLGP20930 4061 aaPredicted RBP8.4□□□□□ -1.06
CNOT3-209ENST00000617930 LCE2CQ5TA81 110 aa8.37□□□□□ -1.07
CNOT3-209ENST00000617930 KRTAP12-2P59991 146 aa8.28□□□□□ -1.08
CNOT3-209ENST00000617930 SPINT4Q6UDR6 99 aa8.26□□□□□ -1.09
CNOT3-209ENST00000617930 M0QZ58 72 aa8.23□□□□□ -1.09
CNOT3-209ENST00000617930 KRTAP12-1P59990 96 aa8.22□□□□□ -1.09
CNOT3-209ENST00000617930 H3BS24 57 aa8.2□□□□□ -1.1
CNOT3-209ENST00000617930 LORP23490 312 aaPredicted RBP8.2□□□□□ -1.1
CNOT3-209ENST00000617930 C10orf95Q9H7T3 257 aa8.16□□□□□ -1.1
CNOT3-209ENST00000617930 MT1HP80294 61 aa8.15□□□□□ -1.11
CNOT3-209ENST00000617930 R4GN34 69 aa8.05□□□□□ -1.12
CNOT3-209ENST00000617930 M0R2T5 61 aa7.93□□□□□ -1.14
CNOT3-209ENST00000617930 KRTAP9-8Q9BYQ0 159 aa7.87□□□□□ -1.15
CNOT3-209ENST00000617930 LCE2AQ5TA79 106 aaPredicted RBP7.86□□□□□ -1.15
CNOT3-209ENST00000617930 MT2AP02795 61 aa7.83□□□□□ -1.16
CNOT3-209ENST00000617930 MT1FP04733 61 aa7.81□□□□□ -1.16
CNOT3-209ENST00000617930 KRTAP15-1Q3LI76 137 aa7.8□□□□□ -1.16
CNOT3-209ENST00000617930 KRTAP19-1Q8IUB9 90 aa7.7□□□□□ -1.18
CNOT3-209ENST00000617930 KRTAP10-10P60014 251 aa7.68□□□□□ -1.18
CNOT3-209ENST00000617930 CAMK2N1Q7Z7J9 78 aa7.66□□□□□ -1.18
CNOT3-209ENST00000617930 SPRR2GQ9BYE4 73 aa7.66□□□□□ -1.18
CNOT3-209ENST00000617930 NDUFAF8A1L188 74 aa7.62□□□□□ -1.19
CNOT3-209ENST00000617930 KRTAP9-3Q9BYQ3 159 aa7.58□□□□□ -1.2
CNOT3-209ENST00000617930 PP632Q6XCG6 107 aa7.52□□□□□ -1.21
CNOT3-209ENST00000617930 PLAC4Q8WY50 150 aa7.51□□□□□ -1.21
CNOT3-209ENST00000617930 LCE2BO14633 110 aa7.42□□□□□ -1.22
CNOT3-209ENST00000617930 KRTAP19-8Q3LI54 63 aa7.42□□□□□ -1.22
CNOT3-209ENST00000617930 MT1BP07438 61 aa7.4□□□□□ -1.23
CNOT3-209ENST00000617930 A0A0A0MQY5 61 aa7.37□□□□□ -1.23
CNOT3-209ENST00000617930 TNP1P09430 55 aa7.37□□□□□ -1.23
CNOT3-209ENST00000617930 USH2AO75445 5202 aa7.36□□□□□ -1.23
CNOT3-209ENST00000617930 KRTAP23-1A1A580 65 aa7.23□□□□□ -1.25
CNOT3-209ENST00000617930 KRTAP10-5P60370 271 aa7.2□□□□□ -1.26
CNOT3-209ENST00000617930 MT1XP80297 61 aa7.2□□□□□ -1.26
CNOT3-209ENST00000617930 LUZP6Q538Z0 58 aa7.19□□□□□ -1.26
CNOT3-209ENST00000617930 SSPOA2VEC9 5147 aa7.13□□□□□ -1.27
CNOT3-209ENST00000617930 FSIP2Q5CZC0 6907 aa7.05□□□□□ -1.28
CNOT3-209ENST00000617930 LCE2DQ5TA82 110 aaPredicted RBP7.05□□□□□ -1.28
CNOT3-209ENST00000617930 LCE3AQ5TA76 89 aa6.98□□□□□ -1.29
CNOT3-209ENST00000617930 KRTAP10-7P60409 375 aaPredicted RBP6.96□□□□□ -1.29
CNOT3-209ENST00000617930 SPRR5A0A1B0GTR4 108 aa6.95□□□□□ -1.3
CNOT3-209ENST00000617930 KRTAP19-6Q3LI70 58 aa6.87□□□□□ -1.31
CNOT3-209ENST00000617930 KRTAP9-6A0A140TA67 174 aa6.86□□□□□ -1.31
CNOT3-209ENST00000617930 KRTAP9-2Q9BYQ4 174 aa6.85□□□□□ -1.31
CNOT3-209ENST00000617930 PRO2289Q9P1D8 64 aa6.85□□□□□ -1.31
CNOT3-209ENST00000617930 KRTAP10-12P60413 245 aa6.83□□□□□ -1.32
CNOT3-209ENST00000617930 KMT2DO14686 5537 aa6.81□□□□□ -1.32
CNOT3-209ENST00000617930 KRTAP8-1Q8IUC2 63 aa6.8□□□□□ -1.32
CNOT3-209ENST00000617930 FCGBPQ9Y6R7 5405 aaPredicted RBP6.8□□□□□ -1.32
CNOT3-209ENST00000617930 KRTAP4-8A0A0G2JLE6 195 aa6.66□□□□□ -1.34
CNOT3-209ENST00000617930 KRTAP4-8Q9BYQ9 185 aa6.66□□□□□ -1.34
CNOT3-209ENST00000617930 KRTAP12-3P60328 96 aa6.64□□□□□ -1.35
CNOT3-209ENST00000617930 KRTAP19-5Q3LI72 72 aa6.57□□□□□ -1.36
CNOT3-209ENST00000617930 CRCT1Q9UGL9 99 aa6.57□□□□□ -1.36
CNOT3-209ENST00000617930 KRTAP19-7Q3SYF9 63 aa6.43□□□□□ -1.38
CNOT3-209ENST00000617930 MACF1Q9UPN3 7388 aaKnown RBP6.39□□□□□ -1.39
CNOT3-209ENST00000617930 MUC12Q9UKN1 5478 aa6.27□□□□□ -1.41
CNOT3-209ENST00000617930 MT1EP04732 61 aa6.25□□□□□ -1.41
CNOT3-209ENST00000617930 SYNE2Q8WXH0 6885 aaKnown RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms