RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 PKHD1P08F94 4074 aa5.21□□□□□ -1.57
SMARCA1-205ENST00000617310 HYDINQ4G0P3 5121 aa5.17□□□□□ -1.58
SMARCA1-205ENST00000617310 P0C880 135 aa5.16□□□□□ -1.58
SMARCA1-205ENST00000617310 DNAH5Q8TE73 4624 aa5.16□□□□□ -1.58
SMARCA1-205ENST00000617310 KRTAP4-5Q9BYR2 181 aa5.15□□□□□ -1.58
SMARCA1-205ENST00000617310 VPS13BQ7Z7G8 4022 aa5.15□□□□□ -1.59
SMARCA1-205ENST00000617310 TNP1P09430 55 aa5.12□□□□□ -1.59
SMARCA1-205ENST00000617310 SACSQ9NZJ4 4579 aa5.12□□□□□ -1.59
SMARCA1-205ENST00000617310 PKHD1L1Q86WI1 4243 aa5.1□□□□□ -1.59
SMARCA1-205ENST00000617310 MT1HL1P0DM35 61 aa5.05□□□□□ -1.6
SMARCA1-205ENST00000617310 C10orf95Q9H7T3 257 aa5.05□□□□□ -1.6
SMARCA1-205ENST00000617310 H0YAA0 97 aa5.05□□□□□ -1.6
SMARCA1-205ENST00000617310 A6NN06 94 aa5.04□□□□□ -1.6
SMARCA1-205ENST00000617310 KRTAP25-1Q3LHN0 102 aa5.01□□□□□ -1.61
SMARCA1-205ENST00000617310 MYCBP2O75592 4640 aa4.99□□□□□ -1.61
SMARCA1-205ENST00000617310 RYR2Q92736 4967 aa4.98□□□□□ -1.61
SMARCA1-205ENST00000617310 LRP1BQ9NZR2 4599 aa4.94□□□□□ -1.62
SMARCA1-205ENST00000617310 KRTAP3-1Q9BYR8 98 aa4.93□□□□□ -1.62
SMARCA1-205ENST00000617310 KRTAP10-4P60372 401 aaPredicted RBP4.92□□□□□ -1.62
SMARCA1-205ENST00000617310 DYNC1H1Q14204 4646 aaKnown RBP4.92□□□□□ -1.62
SMARCA1-205ENST00000617310 H3BS24 57 aa4.92□□□□□ -1.62
SMARCA1-205ENST00000617310 A0A0A0MQY5 61 aa4.91□□□□□ -1.62
SMARCA1-205ENST00000617310 KMT2CQ8NEZ4 4911 aaKnown RBP4.9□□□□□ -1.62
SMARCA1-205ENST00000617310 PRO2289Q9P1D8 64 aa4.9□□□□□ -1.62
SMARCA1-205ENST00000617310 LPAP08519 4548 aa4.9□□□□□ -1.63
SMARCA1-205ENST00000617310 APOBP04114 4563 aaKnown RBP4.89□□□□□ -1.63
SMARCA1-205ENST00000617310 RYR3Q15413 4870 aa4.87□□□□□ -1.63
SMARCA1-205ENST00000617310 FAT3Q8TDW7 4589 aa4.87□□□□□ -1.63
SMARCA1-205ENST00000617310 RYR1P21817 5038 aa4.87□□□□□ -1.63
SMARCA1-205ENST00000617310 FAT1Q14517 4588 aa4.84□□□□□ -1.63
SMARCA1-205ENST00000617310 NDUFAF8A1L188 74 aa4.83□□□□□ -1.64
SMARCA1-205ENST00000617310 KIAA1109Q2LD37 5005 aa4.82□□□□□ -1.64
SMARCA1-205ENST00000617310 KRTAP12-2P59991 146 aa4.82□□□□□ -1.64
SMARCA1-205ENST00000617310 HSPG2P98160 4391 aa4.8□□□□□ -1.64
SMARCA1-205ENST00000617310 PP632Q6XCG6 107 aa4.77□□□□□ -1.65
SMARCA1-205ENST00000617310 KRTAP12-1P59990 96 aa4.73□□□□□ -1.65
SMARCA1-205ENST00000617310 TNXBP22105 4242 aa4.73□□□□□ -1.65
SMARCA1-205ENST00000617310 KRTAP13-4Q3LI77 160 aa4.73□□□□□ -1.65
SMARCA1-205ENST00000617310 KRTAP10-6P60371 365 aaPredicted RBP4.7□□□□□ -1.66
SMARCA1-205ENST00000617310 KRTAP3-3Q9BYR6 98 aa4.62□□□□□ -1.67
SMARCA1-205ENST00000617310 EPPK1P58107 5090 aaKnown RBP4.61□□□□□ -1.67
SMARCA1-205ENST00000617310 KRTAP3-2Q9BYR7 98 aa4.56□□□□□ -1.68
SMARCA1-205ENST00000617310 LRP1Q07954 4544 aaKnown RBP4.53□□□□□ -1.68
SMARCA1-205ENST00000617310 KRTAP4-1Q9BYQ7 146 aa4.53□□□□□ -1.68
SMARCA1-205ENST00000617310 LORP23490 312 aaPredicted RBP4.52□□□□□ -1.69
SMARCA1-205ENST00000617310 KRTAP17-1Q9BYP8 105 aa4.5□□□□□ -1.69
SMARCA1-205ENST00000617310 HERC2O95714 4834 aa4.48□□□□□ -1.69
SMARCA1-205ENST00000617310 ABCA13Q86UQ4 5058 aa4.45□□□□□ -1.7
SMARCA1-205ENST00000617310 KRTAP15-1Q3LI76 137 aa4.45□□□□□ -1.7
SMARCA1-205ENST00000617310 PCLOQ9Y6V0 5065 aa4.43□□□□□ -1.7
SMARCA1-205ENST00000617310 CRCT1Q9UGL9 99 aa4.43□□□□□ -1.7
SMARCA1-205ENST00000617310 KRTAP10-12P60413 245 aa4.41□□□□□ -1.7
SMARCA1-205ENST00000617310 MUC2Q02817 5179 aa4.39□□□□□ -1.71
SMARCA1-205ENST00000617310 MT1HP80294 61 aa4.35□□□□□ -1.71
SMARCA1-205ENST00000617310 BIRC6Q9NR09 4857 aa4.33□□□□□ -1.72
SMARCA1-205ENST00000617310 MUC17Q685J3 4493 aa4.33□□□□□ -1.72
SMARCA1-205ENST00000617310 LRP2P98164 4655 aa4.33□□□□□ -1.72
SMARCA1-205ENST00000617310 MT2AP02795 61 aa4.28□□□□□ -1.72
SMARCA1-205ENST00000617310 KRTAP12-3P60328 96 aa4.25□□□□□ -1.73
SMARCA1-205ENST00000617310 LCE3AQ5TA76 89 aa4.25□□□□□ -1.73
SMARCA1-205ENST00000617310 MT1FP04733 61 aa4.23□□□□□ -1.73
SMARCA1-205ENST00000617310 KRTAP8-1Q8IUC2 63 aa4.21□□□□□ -1.74
SMARCA1-205ENST00000617310 FSIP2Q5CZC0 6907 aa4.19□□□□□ -1.74
SMARCA1-205ENST00000617310 UBR4Q5T4S7 5183 aa4.13□□□□□ -1.75
SMARCA1-205ENST00000617310 FLGP20930 4061 aaPredicted RBP4.11□□□□□ -1.75
SMARCA1-205ENST00000617310 HMCN2Q8NDA2 5059 aa4.11□□□□□ -1.75
SMARCA1-205ENST00000617310 HERC1Q15751 4861 aa4.09□□□□□ -1.75
SMARCA1-205ENST00000617310 SPRR2GQ9BYE4 73 aa4.08□□□□□ -1.76
SMARCA1-205ENST00000617310 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
SMARCA1-205ENST00000617310 SYNE1Q8NF91 8797 aaKnown RBP4.02□□□□□ -1.77
SMARCA1-205ENST00000617310 FAT4Q6V0I7 4981 aa4□□□□□ -1.77
SMARCA1-205ENST00000617310 KRTAP19-1Q8IUB9 90 aa3.97□□□□□ -1.77
SMARCA1-205ENST00000617310 RNF213Q63HN8 5207 aa3.97□□□□□ -1.77
SMARCA1-205ENST00000617310 KRTAP19-2Q3LHN2 52 aa3.97□□□□□ -1.77
SMARCA1-205ENST00000617310 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
SMARCA1-205ENST00000617310 KRTAP10-5P60370 271 aa3.9□□□□□ -1.78
SMARCA1-205ENST00000617310 LCE2CQ5TA81 110 aa3.9□□□□□ -1.78
SMARCA1-205ENST00000617310 KRTAP19-5Q3LI72 72 aa3.9□□□□□ -1.78
SMARCA1-205ENST00000617310 KRTAP9-8Q9BYQ0 159 aa3.89□□□□□ -1.79
SMARCA1-205ENST00000617310 KRTAP10-7P60409 375 aaPredicted RBP3.87□□□□□ -1.79
SMARCA1-205ENST00000617310 KRTAP19-8Q3LI54 63 aa3.82□□□□□ -1.8
SMARCA1-205ENST00000617310 MT1BP07438 61 aa3.82□□□□□ -1.8
SMARCA1-205ENST00000617310 KRTAP4-8A0A0G2JLE6 195 aa3.8□□□□□ -1.8
SMARCA1-205ENST00000617310 KRTAP4-8Q9BYQ9 185 aa3.8□□□□□ -1.8
SMARCA1-205ENST00000617310 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
SMARCA1-205ENST00000617310 MT1XP80297 61 aa3.78□□□□□ -1.8
SMARCA1-205ENST00000617310 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
SMARCA1-205ENST00000617310 SPRR2EP22531 72 aa3.73□□□□□ -1.81
SMARCA1-205ENST00000617310 SPRR2BP35325 72 aa3.73□□□□□ -1.81
SMARCA1-205ENST00000617310 SPRR2AP35326 72 aa3.73□□□□□ -1.81
SMARCA1-205ENST00000617310 LCE2BO14633 110 aa3.72□□□□□ -1.81
SMARCA1-205ENST00000617310 LCE3CQ5T5A8 94 aa3.68□□□□□ -1.82
SMARCA1-205ENST00000617310 KMT2DO14686 5537 aa3.66□□□□□ -1.82
SMARCA1-205ENST00000617310 INE1O15225 51 aa3.66□□□□□ -1.82
SMARCA1-205ENST00000617310 KRTAP9-2Q9BYQ4 174 aa3.61□□□□□ -1.83
SMARCA1-205ENST00000617310 MT1GP13640 62 aa3.59□□□□□ -1.83
SMARCA1-205ENST00000617310 SPRR2DP22532 72 aa3.59□□□□□ -1.84
SMARCA1-205ENST00000617310 USH2AO75445 5202 aa3.58□□□□□ -1.84
SMARCA1-205ENST00000617310 SYNE2Q8WXH0 6885 aaKnown RBP3.54□□□□□ -1.84
SMARCA1-205ENST00000617310 LCE3BQ5TA77 95 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms