RNA–Protein interactions for RNA: ENST00000615216.4

CHD9-221, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 10,603 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-221ENST00000615216 LCE3AQ5TA76 89 aa1.95□□□□□ -2.1
CHD9-221ENST00000615216 DNAH6Q9C0G6 4158 aa1.94□□□□□ -2.1
CHD9-221ENST00000615216 CRCT1Q9UGL9 99 aa1.92□□□□□ -2.1
CHD9-221ENST00000615216 CUBNO60494 3623 aa1.92□□□□□ -2.1
CHD9-221ENST00000615216 SVEP1Q4LDE5 3571 aa1.9□□□□□ -2.11
CHD9-221ENST00000615216 KRTAP4-5Q9BYR2 181 aa1.89□□□□□ -2.11
CHD9-221ENST00000615216 HECTD4Q9Y4D8 3996 aa1.89□□□□□ -2.11
CHD9-221ENST00000615216 MT3P25713 68 aa1.88□□□□□ -2.11
CHD9-221ENST00000615216 DNHD1Q96M86 4753 aa1.88□□□□□ -2.11
CHD9-221ENST00000615216 PCLOQ9Y6V0 5065 aa1.88□□□□□ -2.11
CHD9-221ENST00000615216 KRTAP8-1Q8IUC2 63 aa1.87□□□□□ -2.11
CHD9-221ENST00000615216 DNAH2Q9P225 4427 aa1.87□□□□□ -2.11
CHD9-221ENST00000615216 RYR1P21817 5038 aa1.86□□□□□ -2.11
CHD9-221ENST00000615216 LORP23490 312 aaPredicted RBP1.86□□□□□ -2.11
CHD9-221ENST00000615216 ANK2Q01484 3957 aa1.85□□□□□ -2.11
CHD9-221ENST00000615216 ZNF469Q96JG9 3925 aaPredicted RBP1.84□□□□□ -2.11
CHD9-221ENST00000615216 CSMD3Q7Z407 3707 aa1.84□□□□□ -2.11
CHD9-221ENST00000615216 MUC3AQ02505 3323 aa1.84□□□□□ -2.12
CHD9-221ENST00000615216 LYSTQ99698 3801 aa1.84□□□□□ -2.12
CHD9-221ENST00000615216 KRTAP10-5P60370 271 aa1.83□□□□□ -2.12
CHD9-221ENST00000615216 SPRR2GQ9BYE4 73 aa1.82□□□□□ -2.12
CHD9-221ENST00000615216 HYDINQ4G0P3 5121 aa1.82□□□□□ -2.12
CHD9-221ENST00000615216 DNAH9Q9NYC9 4486 aa1.81□□□□□ -2.12
CHD9-221ENST00000615216 PRKDCP78527 4128 aaKnown RBP1.81□□□□□ -2.12
CHD9-221ENST00000615216 CSMD2Q7Z408 3487 aa1.81□□□□□ -2.12
CHD9-221ENST00000615216 MT1HP80294 61 aa1.8□□□□□ -2.12
CHD9-221ENST00000615216 DNAH11Q96DT5 4516 aa1.8□□□□□ -2.12
CHD9-221ENST00000615216 VPS13BQ7Z7G8 4022 aa1.8□□□□□ -2.12
CHD9-221ENST00000615216 DNAH10Q8IVF4 4471 aa1.79□□□□□ -2.12
CHD9-221ENST00000615216 DYNC2H1Q8NCM8 4307 aaKnown RBP1.79□□□□□ -2.12
CHD9-221ENST00000615216 FAT2Q9NYQ8 4349 aa1.79□□□□□ -2.12
CHD9-221ENST00000615216 VPS13DQ5THJ4 4388 aa1.77□□□□□ -2.13
CHD9-221ENST00000615216 KMT2AQ03164 3969 aa1.77□□□□□ -2.13
CHD9-221ENST00000615216 ABCA13Q86UQ4 5058 aa1.77□□□□□ -2.13
CHD9-221ENST00000615216 KRTAP4-1Q9BYQ7 146 aa1.77□□□□□ -2.13
CHD9-221ENST00000615216 MT2AP02795 61 aa1.77□□□□□ -2.13
CHD9-221ENST00000615216 LCE3CQ5T5A8 94 aa1.76□□□□□ -2.13
CHD9-221ENST00000615216 RYR3Q15413 4870 aa1.76□□□□□ -2.13
CHD9-221ENST00000615216 FRAS1Q86XX4 4008 aa1.76□□□□□ -2.13
CHD9-221ENST00000615216 KRTAP10-7P60409 375 aaPredicted RBP1.75□□□□□ -2.13
CHD9-221ENST00000615216 EPPK1P58107 5090 aaKnown RBP1.75□□□□□ -2.13
CHD9-221ENST00000615216 KRTAP19-5Q3LI72 72 aa1.75□□□□□ -2.13
CHD9-221ENST00000615216 RYR2Q92736 4967 aa1.74□□□□□ -2.13
CHD9-221ENST00000615216 DNAH17Q9UFH2 4485 aa1.73□□□□□ -2.13
CHD9-221ENST00000615216 DYNC1H1Q14204 4646 aaKnown RBP1.72□□□□□ -2.13
CHD9-221ENST00000615216 MT1FP04733 61 aa1.72□□□□□ -2.13
CHD9-221ENST00000615216 SPRR2FQ96RM1 72 aa1.7□□□□□ -2.14
CHD9-221ENST00000615216 PKHD1P08F94 4074 aa1.7□□□□□ -2.14
CHD9-221ENST00000615216 KIAA1109Q2LD37 5005 aa1.69□□□□□ -2.14
CHD9-221ENST00000615216 DNAH8Q96JB1 4490 aa1.69□□□□□ -2.14
CHD9-221ENST00000615216 STARD9Q9P2P6 4700 aa1.67□□□□□ -2.14
CHD9-221ENST00000615216 PLECQ15149 4684 aaKnown RBP1.67□□□□□ -2.14
CHD9-221ENST00000615216 DNAH5Q8TE73 4624 aa1.67□□□□□ -2.14
CHD9-221ENST00000615216 UBR4Q5T4S7 5183 aa1.67□□□□□ -2.14
CHD9-221ENST00000615216 KRTAP19-8Q3LI54 63 aa1.67□□□□□ -2.14
CHD9-221ENST00000615216 PKHD1L1Q86WI1 4243 aa1.66□□□□□ -2.14
CHD9-221ENST00000615216 HERC2O95714 4834 aa1.64□□□□□ -2.15
CHD9-221ENST00000615216 FLGP20930 4061 aaPredicted RBP1.63□□□□□ -2.15
CHD9-221ENST00000615216 RNF213Q63HN8 5207 aa1.62□□□□□ -2.15
CHD9-221ENST00000615216 BIRC6Q9NR09 4857 aa1.62□□□□□ -2.15
CHD9-221ENST00000615216 SPRR2EP22531 72 aa1.62□□□□□ -2.15
CHD9-221ENST00000615216 SPRR2BP35325 72 aa1.62□□□□□ -2.15
CHD9-221ENST00000615216 SPRR2AP35326 72 aa1.62□□□□□ -2.15
CHD9-221ENST00000615216 MT1XP80297 61 aa1.62□□□□□ -2.15
CHD9-221ENST00000615216 KRTAP19-1Q8IUB9 90 aa1.61□□□□□ -2.15
CHD9-221ENST00000615216 LRP1Q07954 4544 aaKnown RBP1.61□□□□□ -2.15
CHD9-221ENST00000615216 LRP1BQ9NZR2 4599 aa1.6□□□□□ -2.15
CHD9-221ENST00000615216 SPRR5A0A1B0GTR4 108 aa1.6□□□□□ -2.15
CHD9-221ENST00000615216 LCE3BQ5TA77 95 aa1.59□□□□□ -2.15
CHD9-221ENST00000615216 LCE2BO14633 110 aa1.58□□□□□ -2.16
CHD9-221ENST00000615216 SPRR2DP22532 72 aa1.58□□□□□ -2.16
CHD9-221ENST00000615216 SACSQ9NZJ4 4579 aa1.57□□□□□ -2.16
CHD9-221ENST00000615216 KRTAP12-4P60329 112 aa1.57□□□□□ -2.16
CHD9-221ENST00000615216 KMT2CQ8NEZ4 4911 aaKnown RBP1.56□□□□□ -2.16
CHD9-221ENST00000615216 MT1GP13640 62 aa1.56□□□□□ -2.16
CHD9-221ENST00000615216 MT1BP07438 61 aa1.56□□□□□ -2.16
CHD9-221ENST00000615216 APOBP04114 4563 aaKnown RBP1.55□□□□□ -2.16
CHD9-221ENST00000615216 KRTAP9-8Q9BYQ0 159 aa1.55□□□□□ -2.16
CHD9-221ENST00000615216 HMCN2Q8NDA2 5059 aa1.54□□□□□ -2.16
CHD9-221ENST00000615216 FAT1Q14517 4588 aa1.54□□□□□ -2.16
CHD9-221ENST00000615216 TNXBP22105 4242 aa1.53□□□□□ -2.16
CHD9-221ENST00000615216 PKD1P98161 4303 aa1.53□□□□□ -2.16
CHD9-221ENST00000615216 KRTAP9-3Q9BYQ3 159 aa1.53□□□□□ -2.16
CHD9-221ENST00000615216 LCE3DQ9BYE3 92 aa1.52□□□□□ -2.17
CHD9-221ENST00000615216 HSPG2P98160 4391 aa1.52□□□□□ -2.17
CHD9-221ENST00000615216 FAT3Q8TDW7 4589 aa1.51□□□□□ -2.17
CHD9-221ENST00000615216 LCE3EQ5T5B0 92 aa1.51□□□□□ -2.17
CHD9-221ENST00000615216 MT1LQ93083 61 aa1.5□□□□□ -2.17
CHD9-221ENST00000615216 MYCBP2O75592 4640 aa1.5□□□□□ -2.17
CHD9-221ENST00000615216 KRTAP19-3Q7Z4W3 81 aa1.5□□□□□ -2.17
CHD9-221ENST00000615216 LCE2CQ5TA81 110 aa1.49□□□□□ -2.17
CHD9-221ENST00000615216 HERC1Q15751 4861 aa1.47□□□□□ -2.17
CHD9-221ENST00000615216 MT1EP04732 61 aa1.47□□□□□ -2.17
CHD9-221ENST00000615216 KRTAP4-8A0A0G2JLE6 195 aa1.46□□□□□ -2.18
CHD9-221ENST00000615216 KRTAP4-8Q9BYQ9 185 aa1.46□□□□□ -2.18
CHD9-221ENST00000615216 MUC17Q685J3 4493 aa1.45□□□□□ -2.18
CHD9-221ENST00000615216 MT1MQ8N339 61 aa1.42□□□□□ -2.18
CHD9-221ENST00000615216 LCE2DQ5TA82 110 aaPredicted RBP1.42□□□□□ -2.18
CHD9-221ENST00000615216 KRTAP19-2Q3LHN2 52 aa1.41□□□□□ -2.18
CHD9-221ENST00000615216 KRTAP19-6Q3LI70 58 aa1.4□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms