RNA–Protein interactions for RNA: ENST00000615216.4

CHD9-221, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 10,603 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-221ENST00000615216 DCAF8L2P0C7V8 631 aa7.63□□□□□ -1.19
CHD9-221ENST00000615216 NISCHQ9Y2I1 1504 aa7.58□□□□□ -1.2
CHD9-221ENST00000615216 PELP1Q8IZL8 1130 aaKnown RBP7.33□□□□□ -1.24
CHD9-221ENST00000615216 SUPT5HO00267 1087 aaKnown RBP7.31□□□□□ -1.24
CHD9-221ENST00000615216 SHROOM4Q9ULL8 1493 aa7.2□□□□□ -1.26
CHD9-221ENST00000615216 APLP2Q06481 763 aa7.14□□□□□ -1.27
CHD9-221ENST00000615216 FAM9AQ8IZU1 332 aaPredicted RBP7.08□□□□□ -1.28
CHD9-221ENST00000615216 ZEB1P37275 1124 aaPredicted RBP7.02□□□□□ -1.29
CHD9-221ENST00000615216 EHMT2Q96KQ7 1210 aa7□□□□□ -1.29
CHD9-221ENST00000615216 CCER1Q8TC90 406 aaPredicted RBP6.97□□□□□ -1.29
CHD9-221ENST00000615216 CENPBP07199 599 aaPredicted RBP6.97□□□□□ -1.29
CHD9-221ENST00000615216 ERICH6Q7L0X2 663 aa6.92□□□□□ -1.3
CHD9-221ENST00000615216 MYT1Q01538 1121 aa6.9□□□□□ -1.3
CHD9-221ENST00000615216 PCGF6Q9BYE7 350 aa6.9□□□□□ -1.3
CHD9-221ENST00000615216 TRIM41Q8WV44 630 aa6.86□□□□□ -1.31
CHD9-221ENST00000615216 NEFLP07196 543 aa6.83□□□□□ -1.32
CHD9-221ENST00000615216 TTBK1Q5TCY1 1321 aaPredicted RBP6.82□□□□□ -1.32
CHD9-221ENST00000615216 UBTFP17480 764 aaKnown RBP6.78□□□□□ -1.32
CHD9-221ENST00000615216 ATP1B4Q9UN42 357 aaPredicted RBP6.75□□□□□ -1.33
CHD9-221ENST00000615216 RANGAP1P46060 587 aaPredicted RBP6.74□□□□□ -1.33
CHD9-221ENST00000615216 TRIM26Q12899 539 aaPredicted RBP6.71□□□□□ -1.34
CHD9-221ENST00000615216 YTHDC1Q96MU7 727 aaKnown RBP6.66□□□□□ -1.34
CHD9-221ENST00000615216 DAXXQ9UER7 740 aaPredicted RBP6.65□□□□□ -1.35
CHD9-221ENST00000615216 HRCP23327 699 aa6.6□□□□□ -1.35
CHD9-221ENST00000615216 PPARGC1BQ86YN6 1023 aaKnown RBP6.52□□□□□ -1.36
CHD9-221ENST00000615216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.52□□□□□ -1.37
CHD9-221ENST00000615216 HNRNPUL2Q1KMD3 747 aaKnown RBP6.52□□□□□ -1.37
CHD9-221ENST00000615216 MYT1LQ9UL68 1186 aa6.52□□□□□ -1.37
CHD9-221ENST00000615216 ITGAEP38570 1179 aa6.5□□□□□ -1.37
CHD9-221ENST00000615216 POLR3GLQ9BT43 218 aa6.5□□□□□ -1.37
CHD9-221ENST00000615216 CHIC1Q5VXU3 224 aa6.5□□□□□ -1.37
CHD9-221ENST00000615216 ZNF316A6NFI3 1004 aaPredicted RBP6.5□□□□□ -1.37
CHD9-221ENST00000615216 RTL5Q5HYW3 569 aaPredicted RBP6.49□□□□□ -1.37
CHD9-221ENST00000615216 CCDC180Q9P1Z9 1646 aa6.48□□□□□ -1.37
CHD9-221ENST00000615216 DIEXFQ68CQ4 756 aaKnown RBP6.46□□□□□ -1.38
CHD9-221ENST00000615216 LOC105371045A0A1W2PR82 267 aa6.44□□□□□ -1.38
CHD9-221ENST00000615216 CLSPNQ9HAW4 1339 aa6.42□□□□□ -1.38
CHD9-221ENST00000615216 FAM50AQ14320 339 aaKnown RBP6.41□□□□□ -1.38
CHD9-221ENST00000615216 SLC4A1APQ9BWU0 796 aaKnown RBP6.41□□□□□ -1.38
CHD9-221ENST00000615216 ANP32CO43423 234 aa6.39□□□□□ -1.39
CHD9-221ENST00000615216 ABCC9O60706 1549 aa6.38□□□□□ -1.39
CHD9-221ENST00000615216 TRIM52Q96A61 297 aa6.37□□□□□ -1.39
CHD9-221ENST00000615216 CDK11AQ9UQ88 783 aaPredicted RBP6.36□□□□□ -1.39
CHD9-221ENST00000615216 SCRIBQ14160 1630 aa6.36□□□□□ -1.39
CHD9-221ENST00000615216 ZBTB47Q9UFB7 747 aaPredicted RBP6.36□□□□□ -1.39
CHD9-221ENST00000615216 CNGB1Q14028 1251 aaPredicted RBP6.34□□□□□ -1.39
CHD9-221ENST00000615216 NEUROD1Q13562 356 aa6.33□□□□□ -1.4
CHD9-221ENST00000615216 DCAF1Q9Y4B6 1507 aa6.32□□□□□ -1.4
CHD9-221ENST00000615216 CANXP27824 592 aaKnown RBP6.31□□□□□ -1.4
CHD9-221ENST00000615216 NEFMP07197 916 aa6.3□□□□□ -1.4
CHD9-221ENST00000615216 ZCCHC6Q5VYS8 1495 aaKnown RBP6.3□□□□□ -1.4
CHD9-221ENST00000615216 GTF3C3Q9Y5Q9 886 aa6.29□□□□□ -1.4
CHD9-221ENST00000615216 ANP32AP39687 249 aaKnown RBP6.29□□□□□ -1.4
CHD9-221ENST00000615216 ZNF326Q5BKZ1 582 aaKnown RBP6.27□□□□□ -1.41
CHD9-221ENST00000615216 PABPN1Q86U42 306 aaKnown RBP eCLIP6.26□□□□□ -1.41
CHD9-221ENST00000615216 BCANQ96GW7 911 aa6.25□□□□□ -1.41
CHD9-221ENST00000615216 ACIN1Q9UKV3 1341 aaKnown RBP6.24□□□□□ -1.41
CHD9-221ENST00000615216 TONSLQ96HA7 1378 aa6.23□□□□□ -1.41
CHD9-221ENST00000615216 RB1CC1Q8TDY2 1594 aa6.23□□□□□ -1.41
CHD9-221ENST00000615216 CSRNP3Q8WYN3 585 aa6.22□□□□□ -1.41
CHD9-221ENST00000615216 ANP32BQ92688 251 aaKnown RBP6.22□□□□□ -1.41
CHD9-221ENST00000615216 FBLN2P98095 1184 aa6.2□□□□□ -1.42
CHD9-221ENST00000615216 UPF2Q9HAU5 1272 aaKnown RBP6.2□□□□□ -1.42
CHD9-221ENST00000615216 SLC24A1O60721 1099 aa6.18□□□□□ -1.42
CHD9-221ENST00000615216 EEA1Q15075 1411 aa6.16□□□□□ -1.42
CHD9-221ENST00000615216 NACADO15069 1562 aa6.16□□□□□ -1.42
CHD9-221ENST00000615216 HSP90AA1P07900 732 aaKnown RBP6.16□□□□□ -1.42
CHD9-221ENST00000615216 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.15□□□□□ -1.42
CHD9-221ENST00000615216 ESF1Q9H501 851 aaKnown RBP6.15□□□□□ -1.43
CHD9-221ENST00000615216 ZNF777Q9ULD5 760 aaPredicted RBP6.15□□□□□ -1.43
CHD9-221ENST00000615216 P3H3Q8IVL6 736 aa6.14□□□□□ -1.43
CHD9-221ENST00000615216 GLIPR1L2Q4G1C9 344 aa6.14□□□□□ -1.43
CHD9-221ENST00000615216 GOLGA3Q08378 1498 aa6.13□□□□□ -1.43
CHD9-221ENST00000615216 NPM2Q86SE8 214 aaKnown RBP6.13□□□□□ -1.43
CHD9-221ENST00000615216 RSF1Q96T23 1441 aaPredicted RBP6.12□□□□□ -1.43
CHD9-221ENST00000615216 FKBP8Q14318 412 aa6.12□□□□□ -1.43
CHD9-221ENST00000615216 CLIP1P30622 1438 aa6.12□□□□□ -1.43
CHD9-221ENST00000615216 HNRNPUQ00839 825 aaKnown RBP eCLIP6.11□□□□□ -1.43
CHD9-221ENST00000615216 STAG3Q9UJ98 1225 aa6.11□□□□□ -1.43
CHD9-221ENST00000615216 MTUS2Q5JR59 1369 aa6.1□□□□□ -1.43
CHD9-221ENST00000615216 WDR43Q15061 677 aaKnown RBP eCLIP6.1□□□□□ -1.43
CHD9-221ENST00000615216 BCL11AQ9H165 835 aa6.1□□□□□ -1.43
CHD9-221ENST00000615216 ARID3CA6NKF2 412 aa6.1□□□□□ -1.43
CHD9-221ENST00000615216 MYH16Q9H6N6 1097 aa6.09□□□□□ -1.43
CHD9-221ENST00000615216 TMC1Q8TDI8 760 aa6.09□□□□□ -1.43
CHD9-221ENST00000615216 CCDC136Q96JN2 1154 aa6.09□□□□□ -1.43
CHD9-221ENST00000615216 EIF5BO60841 1220 aaKnown RBP6.09□□□□□ -1.43
CHD9-221ENST00000615216 DDRGK1Q96HY6 314 aa6.08□□□□□ -1.44
CHD9-221ENST00000615216 NPM1P06748 294 aaKnown RBP eCLIP6.08□□□□□ -1.44
CHD9-221ENST00000615216 FAM9BQ8IZU0 186 aa6.07□□□□□ -1.44
CHD9-221ENST00000615216 CEP164Q9UPV0 1460 aa6.07□□□□□ -1.44
CHD9-221ENST00000615216 ANP32EQ9BTT0 268 aa6.07□□□□□ -1.44
CHD9-221ENST00000615216 BAZ1BQ9UIG0 1483 aaKnown RBP6.07□□□□□ -1.44
CHD9-221ENST00000615216 DDX10Q13206 875 aaKnown RBP6.06□□□□□ -1.44
CHD9-221ENST00000615216 BECN1Q14457 450 aa6.06□□□□□ -1.44
CHD9-221ENST00000615216 CEP162Q5TB80 1403 aa6.06□□□□□ -1.44
CHD9-221ENST00000615216 CHGAP10645 457 aaKnown RBP6.06□□□□□ -1.44
CHD9-221ENST00000615216 BAZ1AQ9NRL2 1556 aaPredicted RBP6.05□□□□□ -1.44
CHD9-221ENST00000615216 TSPY4P0CV99 314 aa6.05□□□□□ -1.44
CHD9-221ENST00000615216 TSPY10P0CW01 314 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms