RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 KRTAP3-1Q9BYR8 98 aa7.19□□□□□ -1.26
NEK3-205ENST00000610828 XP32Q5T750 250 aa7.18□□□□□ -1.26
NEK3-205ENST00000610828 RPL37P61927 97 aaKnown RBP7.18□□□□□ -1.26
NEK3-205ENST00000610828 A0A0A0MQY5 61 aa7.16□□□□□ -1.26
NEK3-205ENST00000610828 COX6B2Q6YFQ2 88 aa7.12□□□□□ -1.27
NEK3-205ENST00000610828 KRTAP4-5Q9BYR2 181 aa7.09□□□□□ -1.27
NEK3-205ENST00000610828 LINC01554Q52M75 96 aa7.09□□□□□ -1.28
NEK3-205ENST00000610828 ABCA13Q86UQ4 5058 aa7.06□□□□□ -1.28
NEK3-205ENST00000610828 UQCR11O14957 56 aa7.05□□□□□ -1.28
NEK3-205ENST00000610828 MIR22HGQ0VDD5 57 aa7.02□□□□□ -1.29
NEK3-205ENST00000610828 TPRXLQ17RH7 258 aa7.02□□□□□ -1.29
NEK3-205ENST00000610828 LPAP08519 4548 aa7.02□□□□□ -1.29
NEK3-205ENST00000610828 SPATA8Q6RVD6 105 aa7.02□□□□□ -1.29
NEK3-205ENST00000610828 LRP2P98164 4655 aa7.01□□□□□ -1.29
NEK3-205ENST00000610828 PRAC1Q96KF2 57 aa6.91□□□□□ -1.3
NEK3-205ENST00000610828 S4R3F8 94 aa6.9□□□□□ -1.3
NEK3-205ENST00000610828 A0A1B0GU33 70 aa6.89□□□□□ -1.31
NEK3-205ENST00000610828 J3QL48 77 aa6.89□□□□□ -1.31
NEK3-205ENST00000610828 HERC2O95714 4834 aa6.89□□□□□ -1.31
NEK3-205ENST00000610828 H1FX-AS1Q4G0G2 97 aa6.86□□□□□ -1.31
NEK3-205ENST00000610828 H0YAA0 97 aa6.86□□□□□ -1.31
NEK3-205ENST00000610828 ADM2Q7Z4H4 148 aa6.81□□□□□ -1.32
NEK3-205ENST00000610828 BIRC6Q9NR09 4857 aa6.8□□□□□ -1.32
NEK3-205ENST00000610828 KRTAP10-6P60371 365 aaPredicted RBP6.76□□□□□ -1.33
NEK3-205ENST00000610828 SEC61BP60468 96 aaKnown RBP6.76□□□□□ -1.33
NEK3-205ENST00000610828 MUC17Q685J3 4493 aa6.72□□□□□ -1.33
NEK3-205ENST00000610828 LCE2BO14633 110 aa6.69□□□□□ -1.34
NEK3-205ENST00000610828 CSAG1Q6PB30 78 aa6.69□□□□□ -1.34
NEK3-205ENST00000610828 P0C880 135 aa6.68□□□□□ -1.34
NEK3-205ENST00000610828 KRTAP13-4Q3LI77 160 aa6.66□□□□□ -1.34
NEK3-205ENST00000610828 KRTAP4-1Q9BYQ7 146 aa6.65□□□□□ -1.34
NEK3-205ENST00000610828 PCLOQ9Y6V0 5065 aa6.62□□□□□ -1.35
NEK3-205ENST00000610828 A0A0D9SG42 100 aa6.61□□□□□ -1.35
NEK3-205ENST00000610828 K7ERS5 55 aa6.61□□□□□ -1.35
NEK3-205ENST00000610828 ROMO1P60602 79 aa6.6□□□□□ -1.35
NEK3-205ENST00000610828 MUC2Q02817 5179 aa6.58□□□□□ -1.36
NEK3-205ENST00000610828 HERC1Q15751 4861 aa6.58□□□□□ -1.36
NEK3-205ENST00000610828 HMCN2Q8NDA2 5059 aa6.5□□□□□ -1.37
NEK3-205ENST00000610828 KRTAP19-2Q3LHN2 52 aa6.49□□□□□ -1.37
NEK3-205ENST00000610828 M0QZ58 72 aa6.47□□□□□ -1.37
NEK3-205ENST00000610828 KRTAP12-2P59991 146 aa6.43□□□□□ -1.38
NEK3-205ENST00000610828 KRTAP25-1Q3LHN0 102 aa6.43□□□□□ -1.38
NEK3-205ENST00000610828 CRIPTQ9P021 101 aa6.43□□□□□ -1.38
NEK3-205ENST00000610828 SPINT4Q6UDR6 99 aa6.42□□□□□ -1.38
NEK3-205ENST00000610828 R4GN34 69 aa6.4□□□□□ -1.38
NEK3-205ENST00000610828 KRTAP12-1P59990 96 aa6.4□□□□□ -1.39
NEK3-205ENST00000610828 FLGP20930 4061 aaPredicted RBP6.38□□□□□ -1.39
NEK3-205ENST00000610828 LORP23490 312 aaPredicted RBP6.35□□□□□ -1.39
NEK3-205ENST00000610828 LCE2AQ5TA79 106 aaPredicted RBP6.31□□□□□ -1.4
NEK3-205ENST00000610828 FAT4Q6V0I7 4981 aa6.26□□□□□ -1.41
NEK3-205ENST00000610828 UBR4Q5T4S7 5183 aa6.25□□□□□ -1.41
NEK3-205ENST00000610828 LCE2CQ5TA81 110 aa6.24□□□□□ -1.41
NEK3-205ENST00000610828 RNF213Q63HN8 5207 aa6.22□□□□□ -1.41
NEK3-205ENST00000610828 NDUFAF8A1L188 74 aa6.21□□□□□ -1.42
NEK3-205ENST00000610828 C10orf95Q9H7T3 257 aa6.21□□□□□ -1.42
NEK3-205ENST00000610828 LUZP6Q538Z0 58 aa6.21□□□□□ -1.42
NEK3-205ENST00000610828 M0R2T5 61 aa6.11□□□□□ -1.43
NEK3-205ENST00000610828 MT1HP80294 61 aa6.08□□□□□ -1.44
NEK3-205ENST00000610828 CAMK2N1Q7Z7J9 78 aa6.05□□□□□ -1.44
NEK3-205ENST00000610828 KRTAP15-1Q3LI76 137 aa6□□□□□ -1.45
NEK3-205ENST00000610828 SPRR2GQ9BYE4 73 aa5.94□□□□□ -1.46
NEK3-205ENST00000610828 KRTAP19-1Q8IUB9 90 aa5.92□□□□□ -1.46
NEK3-205ENST00000610828 MT2AP02795 61 aa5.91□□□□□ -1.46
NEK3-205ENST00000610828 KRTAP10-10P60014 251 aa5.91□□□□□ -1.46
NEK3-205ENST00000610828 MT1FP04733 61 aa5.9□□□□□ -1.46
NEK3-205ENST00000610828 KRTAP9-8Q9BYQ0 159 aa5.89□□□□□ -1.47
NEK3-205ENST00000610828 PLAC4Q8WY50 150 aa5.86□□□□□ -1.47
NEK3-205ENST00000610828 TNP1P09430 55 aa5.78□□□□□ -1.48
NEK3-205ENST00000610828 PP632Q6XCG6 107 aa5.75□□□□□ -1.49
NEK3-205ENST00000610828 KRTAP19-8Q3LI54 63 aa5.7□□□□□ -1.5
NEK3-205ENST00000610828 KRTAP9-3Q9BYQ3 159 aa5.65□□□□□ -1.5
NEK3-205ENST00000610828 MT1BP07438 61 aa5.65□□□□□ -1.51
NEK3-205ENST00000610828 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
NEK3-205ENST00000610828 LOC100996750A0A140TA64 210 aa5.6□□□□□ -1.51
NEK3-205ENST00000610828 KRTAP4-6Q9BYQ5 205 aa5.6□□□□□ -1.51
NEK3-205ENST00000610828 KRTAP10-5P60370 271 aa5.55□□□□□ -1.52
NEK3-205ENST00000610828 MT1XP80297 61 aa5.55□□□□□ -1.52
NEK3-205ENST00000610828 LCE3AQ5TA76 89 aa5.5□□□□□ -1.53
NEK3-205ENST00000610828 USH2AO75445 5202 aa5.45□□□□□ -1.54
NEK3-205ENST00000610828 PRO2289Q9P1D8 64 aa5.42□□□□□ -1.54
NEK3-205ENST00000610828 KRTAP10-7P60409 375 aaPredicted RBP5.38□□□□□ -1.55
NEK3-205ENST00000610828 KRTAP10-12P60413 245 aa5.38□□□□□ -1.55
NEK3-205ENST00000610828 KRTAP8-1Q8IUC2 63 aa5.35□□□□□ -1.55
NEK3-205ENST00000610828 SPRR5A0A1B0GTR4 108 aa5.26□□□□□ -1.57
NEK3-205ENST00000610828 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
NEK3-205ENST00000610828 KMT2DO14686 5537 aa5.23□□□□□ -1.57
NEK3-205ENST00000610828 KRTAP4-8Q9BYQ9 185 aa5.18□□□□□ -1.58
NEK3-205ENST00000610828 KRTAP4-8A0A0G2JLE6 195 aa5.11□□□□□ -1.59
NEK3-205ENST00000610828 KRTAP19-5Q3LI72 72 aa5.11□□□□□ -1.59
NEK3-205ENST00000610828 SSPOA2VEC9 5147 aa5.11□□□□□ -1.59
NEK3-205ENST00000610828 KRTAP9-2Q9BYQ4 174 aa5.08□□□□□ -1.6
NEK3-205ENST00000610828 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.07□□□□□ -1.6
NEK3-205ENST00000610828 KRTAP9-6A0A140TA67 174 aa5.06□□□□□ -1.6
NEK3-205ENST00000610828 FSIP2Q5CZC0 6907 aa5.05□□□□□ -1.6
NEK3-205ENST00000610828 KRTAP4-12Q9BQ66 201 aa5.01□□□□□ -1.61
NEK3-205ENST00000610828 KRTAP19-6Q3LI70 58 aa4.99□□□□□ -1.61
NEK3-205ENST00000610828 INE1O15225 51 aa4.96□□□□□ -1.62
NEK3-205ENST00000610828 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
NEK3-205ENST00000610828 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
NEK3-205ENST00000610828 LCE3CQ5T5A8 94 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms