RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 KRTAP10-4P60372 401 aaPredicted RBP10.61□□□□□ -0.71
SSBP3-216ENST00000610401 KRTAP10-8P60410 259 aa10.59□□□□□ -0.71
SSBP3-216ENST00000610401 KRTAP13-4Q3LI77 160 aa10.58□□□□□ -0.72
SSBP3-216ENST00000610401 LPAP08519 4548 aa10.58□□□□□ -0.72
SSBP3-216ENST00000610401 C10orf95Q9H7T3 257 aa10.51□□□□□ -0.73
SSBP3-216ENST00000610401 A0A1B0GVY2 172 aa10.49□□□□□ -0.73
SSBP3-216ENST00000610401 P0C880 135 aa10.48□□□□□ -0.73
SSBP3-216ENST00000610401 KRTAP3-3Q9BYR6 98 aa10.47□□□□□ -0.73
SSBP3-216ENST00000610401 KRTAP10-6P60371 365 aaPredicted RBP10.46□□□□□ -0.73
SSBP3-216ENST00000610401 ROMO1P60602 79 aa10.45□□□□□ -0.74
SSBP3-216ENST00000610401 RPL37P61927 97 aaKnown RBP10.44□□□□□ -0.74
SSBP3-216ENST00000610401 RYR2Q92736 4967 aa10.42□□□□□ -0.74
SSBP3-216ENST00000610401 S4R3F8 94 aa10.42□□□□□ -0.74
SSBP3-216ENST00000610401 TNXBP22105 4242 aa10.41□□□□□ -0.74
SSBP3-216ENST00000610401 SPINT4Q6UDR6 99 aa10.4□□□□□ -0.74
SSBP3-216ENST00000610401 Q5VSD8 79 aa10.38□□□□□ -0.75
SSBP3-216ENST00000610401 LRP2P98164 4655 aa10.38□□□□□ -0.75
SSBP3-216ENST00000610401 XP32Q5T750 250 aa10.37□□□□□ -0.75
SSBP3-216ENST00000610401 KIAA1109Q2LD37 5005 aa10.34□□□□□ -0.75
SSBP3-216ENST00000610401 KRTAP3-2Q9BYR7 98 aa10.34□□□□□ -0.75
SSBP3-216ENST00000610401 TPRXLQ17RH7 258 aa10.31□□□□□ -0.76
SSBP3-216ENST00000610401 KRTAP12-2P59991 146 aa10.26□□□□□ -0.77
SSBP3-216ENST00000610401 KRTAP17-1Q9BYP8 105 aa10.25□□□□□ -0.77
SSBP3-216ENST00000610401 RYR1P21817 5038 aa10.24□□□□□ -0.77
SSBP3-216ENST00000610401 RYR3Q15413 4870 aa10.24□□□□□ -0.77
SSBP3-216ENST00000610401 ABCA13Q86UQ4 5058 aa10.1□□□□□ -0.79
SSBP3-216ENST00000610401 NDUFAF8A1L188 74 aa10.06□□□□□ -0.8
SSBP3-216ENST00000610401 KRTAP12-1P59990 96 aa10.02□□□□□ -0.8
SSBP3-216ENST00000610401 MT1HL1P0DM35 61 aa9.95□□□□□ -0.82
SSBP3-216ENST00000610401 M0QZ58 72 aa9.93□□□□□ -0.82
SSBP3-216ENST00000610401 EPPK1P58107 5090 aaKnown RBP9.92□□□□□ -0.82
SSBP3-216ENST00000610401 MUC2Q02817 5179 aa9.89□□□□□ -0.83
SSBP3-216ENST00000610401 R4GN34 69 aa9.84□□□□□ -0.83
SSBP3-216ENST00000610401 LORP23490 312 aaPredicted RBP9.77□□□□□ -0.85
SSBP3-216ENST00000610401 KRTAP4-5Q9BYR2 181 aa9.76□□□□□ -0.85
SSBP3-216ENST00000610401 KRTAP21-3Q3LHN1 58 aa9.73□□□□□ -0.85
SSBP3-216ENST00000610401 KRTAP15-1Q3LI76 137 aa9.72□□□□□ -0.85
SSBP3-216ENST00000610401 KRTAP4-1Q9BYQ7 146 aa9.53□□□□□ -0.88
SSBP3-216ENST00000610401 CAMK2N1Q7Z7J9 78 aa9.47□□□□□ -0.89
SSBP3-216ENST00000610401 MUC17Q685J3 4493 aa9.44□□□□□ -0.9
SSBP3-216ENST00000610401 J3QL48 77 aa9.44□□□□□ -0.9
SSBP3-216ENST00000610401 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
SSBP3-216ENST00000610401 HERC2O95714 4834 aa9.38□□□□□ -0.91
SSBP3-216ENST00000610401 PLAC4Q8WY50 150 aa9.36□□□□□ -0.91
SSBP3-216ENST00000610401 FAT4Q6V0I7 4981 aa9.33□□□□□ -0.92
SSBP3-216ENST00000610401 HERC1Q15751 4861 aa9.21□□□□□ -0.93
SSBP3-216ENST00000610401 PCLOQ9Y6V0 5065 aa9.21□□□□□ -0.93
SSBP3-216ENST00000610401 A0A0A0MQY5 61 aa9.12□□□□□ -0.95
SSBP3-216ENST00000610401 RNF213Q63HN8 5207 aa9.09□□□□□ -0.95
SSBP3-216ENST00000610401 LUZP6Q538Z0 58 aa9.07□□□□□ -0.96
SSBP3-216ENST00000610401 KRTAP19-2Q3LHN2 52 aa9.02□□□□□ -0.96
SSBP3-216ENST00000610401 FLGP20930 4061 aaPredicted RBP8.97□□□□□ -0.97
SSBP3-216ENST00000610401 TNP1P09430 55 aa8.88□□□□□ -0.99
SSBP3-216ENST00000610401 M0R2T5 61 aa8.86□□□□□ -0.99
SSBP3-216ENST00000610401 PP632Q6XCG6 107 aa8.84□□□□□ -0.99
SSBP3-216ENST00000610401 HMCN2Q8NDA2 5059 aa8.78□□□□□ -1
SSBP3-216ENST00000610401 BIRC6Q9NR09 4857 aa8.76□□□□□ -1.01
SSBP3-216ENST00000610401 UBR4Q5T4S7 5183 aa8.75□□□□□ -1.01
SSBP3-216ENST00000610401 KRTAP10-10P60014 251 aa8.54□□□□□ -1.04
SSBP3-216ENST00000610401 LCE3AQ5TA76 89 aa8.52□□□□□ -1.05
SSBP3-216ENST00000610401 LCE2CQ5TA81 110 aa8.51□□□□□ -1.05
SSBP3-216ENST00000610401 KRTAP19-1Q8IUB9 90 aa8.51□□□□□ -1.05
SSBP3-216ENST00000610401 MT1FP04733 61 aa8.37□□□□□ -1.07
SSBP3-216ENST00000610401 SPRR2GQ9BYE4 73 aa8.36□□□□□ -1.07
SSBP3-216ENST00000610401 MT1HP80294 61 aa8.34□□□□□ -1.07
SSBP3-216ENST00000610401 USH2AO75445 5202 aa8.29□□□□□ -1.08
SSBP3-216ENST00000610401 MT2AP02795 61 aa8.28□□□□□ -1.08
SSBP3-216ENST00000610401 SPRR5A0A1B0GTR4 108 aa8.25□□□□□ -1.09
SSBP3-216ENST00000610401 KMT2DO14686 5537 aa8.24□□□□□ -1.09
SSBP3-216ENST00000610401 KRTAP23-1A1A580 65 aa8.19□□□□□ -1.1
SSBP3-216ENST00000610401 KRTAP9-8Q9BYQ0 159 aa8.13□□□□□ -1.11
SSBP3-216ENST00000610401 KRTAP10-5P60370 271 aa8.04□□□□□ -1.12
SSBP3-216ENST00000610401 MT1XP80297 61 aa8.03□□□□□ -1.12
SSBP3-216ENST00000610401 KRTAP10-7P60409 375 aaPredicted RBP8.02□□□□□ -1.13
SSBP3-216ENST00000610401 MT1BP07438 61 aa8.01□□□□□ -1.13
SSBP3-216ENST00000610401 KRTAP12-3P60328 96 aa8.01□□□□□ -1.13
SSBP3-216ENST00000610401 KRTAP10-12P60413 245 aa8.01□□□□□ -1.13
SSBP3-216ENST00000610401 KRTAP8-1Q8IUC2 63 aa7.94□□□□□ -1.14
SSBP3-216ENST00000610401 KRTAP19-8Q3LI54 63 aa7.86□□□□□ -1.15
SSBP3-216ENST00000610401 FSIP2Q5CZC0 6907 aa7.8□□□□□ -1.16
SSBP3-216ENST00000610401 KRTAP9-3Q9BYQ3 159 aa7.73□□□□□ -1.17
SSBP3-216ENST00000610401 KRTAP19-5Q3LI72 72 aa7.69□□□□□ -1.18
SSBP3-216ENST00000610401 KRTAP4-8A0A0G2JLE6 195 aa7.67□□□□□ -1.18
SSBP3-216ENST00000610401 KRTAP4-8Q9BYQ9 185 aa7.67□□□□□ -1.18
SSBP3-216ENST00000610401 PRO2289Q9P1D8 64 aa7.61□□□□□ -1.19
SSBP3-216ENST00000610401 LCE2BO14633 110 aa7.57□□□□□ -1.2
SSBP3-216ENST00000610401 KRTAP4-7Q9BYR0 210 aa7.52□□□□□ -1.21
SSBP3-216ENST00000610401 LCE3CQ5T5A8 94 aa7.46□□□□□ -1.22
SSBP3-216ENST00000610401 INE1O15225 51 aa7.43□□□□□ -1.22
SSBP3-216ENST00000610401 KRTAP9-6A8MVA2 160 aa7.39□□□□□ -1.23
SSBP3-216ENST00000610401 DSTQ03001 7570 aaKnown RBP7.3□□□□□ -1.24
SSBP3-216ENST00000610401 MUC12Q9UKN1 5478 aa7.16□□□□□ -1.26
SSBP3-216ENST00000610401 KRTAP19-7Q3SYF9 63 aa7.14□□□□□ -1.27
SSBP3-216ENST00000610401 FCGBPQ9Y6R7 5405 aaPredicted RBP7.1□□□□□ -1.27
SSBP3-216ENST00000610401 SSPOA2VEC9 5147 aa7.09□□□□□ -1.27
SSBP3-216ENST00000610401 CRCT1Q9UGL9 99 aa7.07□□□□□ -1.28
SSBP3-216ENST00000610401 LCE2AQ5TA79 106 aaPredicted RBP6.99□□□□□ -1.29
SSBP3-216ENST00000610401 LOC100996750A0A140TA64 210 aa6.98□□□□□ -1.29
SSBP3-216ENST00000610401 KRTAP4-3Q9BYR4 195 aa6.98□□□□□ -1.29
SSBP3-216ENST00000610401 MT1LQ93083 61 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms