RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ALMS1Q8TCU4 4167 aa8.46□□□□□ -1.06
UPF1-207ENST00000599848 VPS13CQ709C8 3753 aa8.45□□□□□ -1.06
UPF1-207ENST00000599848 KRTAP10-5P60370 271 aa8.37□□□□□ -1.07
UPF1-207ENST00000599848 KRTAP19-4Q3LI73 84 aa8.33□□□□□ -1.08
UPF1-207ENST00000599848 MT1HP80294 61 aa8.32□□□□□ -1.08
UPF1-207ENST00000599848 KRTAP10-7P60409 375 aaPredicted RBP8.28□□□□□ -1.08
UPF1-207ENST00000599848 CSMD3Q7Z407 3707 aa8.19□□□□□ -1.1
UPF1-207ENST00000599848 MT2AP02795 61 aa8.19□□□□□ -1.1
UPF1-207ENST00000599848 SPRR2FQ96RM1 72 aa8.16□□□□□ -1.1
UPF1-207ENST00000599848 SPRR2GQ9BYE4 73 aa8.16□□□□□ -1.1
UPF1-207ENST00000599848 ZNF469Q96JG9 3925 aaPredicted RBP8.14□□□□□ -1.11
UPF1-207ENST00000599848 KRTAP4-1Q9BYQ7 146 aa7.99□□□□□ -1.13
UPF1-207ENST00000599848 DNAH9Q9NYC9 4486 aa7.95□□□□□ -1.14
UPF1-207ENST00000599848 DNAH1Q9P2D7 4330 aa7.93□□□□□ -1.14
UPF1-207ENST00000599848 AKAP9Q99996 3911 aa7.91□□□□□ -1.14
UPF1-207ENST00000599848 MT1FP04733 61 aa7.88□□□□□ -1.15
UPF1-207ENST00000599848 DNAH5Q8TE73 4624 aa7.88□□□□□ -1.15
UPF1-207ENST00000599848 DNAH2Q9P225 4427 aa7.86□□□□□ -1.15
UPF1-207ENST00000599848 DNAH10Q8IVF4 4471 aa7.85□□□□□ -1.15
UPF1-207ENST00000599848 DNAH11Q96DT5 4516 aa7.85□□□□□ -1.15
UPF1-207ENST00000599848 PLECQ15149 4684 aaKnown RBP7.81□□□□□ -1.16
UPF1-207ENST00000599848 SPRR2EP22531 72 aa7.79□□□□□ -1.16
UPF1-207ENST00000599848 SPRR2BP35325 72 aa7.79□□□□□ -1.16
UPF1-207ENST00000599848 SPRR2AP35326 72 aa7.79□□□□□ -1.16
UPF1-207ENST00000599848 KRTAP19-5Q3LI72 72 aa7.76□□□□□ -1.17
UPF1-207ENST00000599848 DNHD1Q96M86 4753 aa7.75□□□□□ -1.17
UPF1-207ENST00000599848 LCE3CQ5T5A8 94 aa7.71□□□□□ -1.18
UPF1-207ENST00000599848 KRTAP19-8Q3LI54 63 aa7.6□□□□□ -1.19
UPF1-207ENST00000599848 SPRR2DP22532 72 aa7.6□□□□□ -1.19
UPF1-207ENST00000599848 KRTAP12-4P60329 112 aa7.56□□□□□ -1.2
UPF1-207ENST00000599848 VPS13DQ5THJ4 4388 aa7.54□□□□□ -1.2
UPF1-207ENST00000599848 LCE2BO14633 110 aa7.53□□□□□ -1.2
UPF1-207ENST00000599848 DNAH17Q9UFH2 4485 aa7.51□□□□□ -1.21
UPF1-207ENST00000599848 FAT1Q14517 4588 aa7.51□□□□□ -1.21
UPF1-207ENST00000599848 DYNC1H1Q14204 4646 aaKnown RBP7.5□□□□□ -1.21
UPF1-207ENST00000599848 STARD9Q9P2P6 4700 aa7.47□□□□□ -1.21
UPF1-207ENST00000599848 LRP1BQ9NZR2 4599 aa7.45□□□□□ -1.22
UPF1-207ENST00000599848 HERC1Q15751 4861 aa7.43□□□□□ -1.22
UPF1-207ENST00000599848 RYR1P21817 5038 aa7.39□□□□□ -1.23
UPF1-207ENST00000599848 DNAH8Q96JB1 4490 aa7.35□□□□□ -1.23
UPF1-207ENST00000599848 MT1GP13640 62 aa7.33□□□□□ -1.24
UPF1-207ENST00000599848 LRP1Q07954 4544 aaKnown RBP7.32□□□□□ -1.24
UPF1-207ENST00000599848 PRKDCP78527 4128 aaKnown RBP7.3□□□□□ -1.24
UPF1-207ENST00000599848 SACSQ9NZJ4 4579 aa7.26□□□□□ -1.25
UPF1-207ENST00000599848 KRTAP19-1Q8IUB9 90 aa7.25□□□□□ -1.25
UPF1-207ENST00000599848 FAT2Q9NYQ8 4349 aa7.22□□□□□ -1.25
UPF1-207ENST00000599848 DNAH3Q8TD57 4116 aa7.22□□□□□ -1.25
UPF1-207ENST00000599848 DYNC2H1Q8NCM8 4307 aaKnown RBP7.21□□□□□ -1.26
UPF1-207ENST00000599848 KMT2AQ03164 3969 aa7.21□□□□□ -1.26
UPF1-207ENST00000599848 ANK2Q01484 3957 aa7.19□□□□□ -1.26
UPF1-207ENST00000599848 LYSTQ99698 3801 aa7.15□□□□□ -1.27
UPF1-207ENST00000599848 MT1XP80297 61 aa7.14□□□□□ -1.27
UPF1-207ENST00000599848 LCE3BQ5TA77 95 aa7.13□□□□□ -1.27
UPF1-207ENST00000599848 APOBP04114 4563 aaKnown RBP7.13□□□□□ -1.27
UPF1-207ENST00000599848 MYCBP2O75592 4640 aa7.12□□□□□ -1.27
UPF1-207ENST00000599848 VPS13BQ7Z7G8 4022 aa7.12□□□□□ -1.27
UPF1-207ENST00000599848 MT1BP07438 61 aa7.09□□□□□ -1.27
UPF1-207ENST00000599848 KIAA1109Q2LD37 5005 aa7.06□□□□□ -1.28
UPF1-207ENST00000599848 LCE2CQ5TA81 110 aa7.06□□□□□ -1.28
UPF1-207ENST00000599848 KRTAP9-8Q9BYQ0 159 aa7.06□□□□□ -1.28
UPF1-207ENST00000599848 FAT3Q8TDW7 4589 aa7.03□□□□□ -1.28
UPF1-207ENST00000599848 HSPG2P98160 4391 aa7□□□□□ -1.29
UPF1-207ENST00000599848 KRTAP9-3Q9BYQ3 159 aa7□□□□□ -1.29
UPF1-207ENST00000599848 KRTAP17-1Q9BYP8 105 aa6.99□□□□□ -1.29
UPF1-207ENST00000599848 LCE2DQ5TA82 110 aaPredicted RBP6.97□□□□□ -1.29
UPF1-207ENST00000599848 RYR3Q15413 4870 aa6.97□□□□□ -1.29
UPF1-207ENST00000599848 KRTAP19-3Q7Z4W3 81 aa6.91□□□□□ -1.3
UPF1-207ENST00000599848 LCE3DQ9BYE3 92 aa6.91□□□□□ -1.3
UPF1-207ENST00000599848 FRAS1Q86XX4 4008 aa6.88□□□□□ -1.31
UPF1-207ENST00000599848 DNAH6Q9C0G6 4158 aa6.83□□□□□ -1.32
UPF1-207ENST00000599848 LCE3EQ5T5B0 92 aa6.83□□□□□ -1.32
UPF1-207ENST00000599848 CMYA5Q8N3K9 4069 aa6.82□□□□□ -1.32
UPF1-207ENST00000599848 RYR2Q92736 4967 aa6.82□□□□□ -1.32
UPF1-207ENST00000599848 BIRC6Q9NR09 4857 aa6.77□□□□□ -1.33
UPF1-207ENST00000599848 MT1LQ93083 61 aa6.75□□□□□ -1.33
UPF1-207ENST00000599848 HECTD4Q9Y4D8 3996 aa6.73□□□□□ -1.33
UPF1-207ENST00000599848 KRTAP4-8A0A0G2JLE6 195 aa6.73□□□□□ -1.33
UPF1-207ENST00000599848 KRTAP4-8Q9BYQ9 185 aa6.73□□□□□ -1.33
UPF1-207ENST00000599848 MT3P25713 68 aa6.7□□□□□ -1.34
UPF1-207ENST00000599848 KRTAP9-2Q9BYQ4 174 aa6.69□□□□□ -1.34
UPF1-207ENST00000599848 DNAH7Q8WXX0 4024 aa6.69□□□□□ -1.34
UPF1-207ENST00000599848 HERC2O95714 4834 aa6.67□□□□□ -1.34
UPF1-207ENST00000599848 KRTAP19-6Q3LI70 58 aa6.65□□□□□ -1.34
UPF1-207ENST00000599848 PCLOQ9Y6V0 5065 aa6.64□□□□□ -1.35
UPF1-207ENST00000599848 PKD1P98161 4303 aa6.62□□□□□ -1.35
UPF1-207ENST00000599848 HYDINQ4G0P3 5121 aa6.62□□□□□ -1.35
UPF1-207ENST00000599848 LRP2P98164 4655 aa6.6□□□□□ -1.35
UPF1-207ENST00000599848 MT1EP04732 61 aa6.59□□□□□ -1.35
UPF1-207ENST00000599848 KRTAP9-6A0A140TA67 174 aa6.58□□□□□ -1.36
UPF1-207ENST00000599848 PKHD1L1Q86WI1 4243 aa6.54□□□□□ -1.36
UPF1-207ENST00000599848 SPRR5A0A1B0GTR4 108 aa6.5□□□□□ -1.37
UPF1-207ENST00000599848 PKHD1P08F94 4074 aa6.5□□□□□ -1.37
UPF1-207ENST00000599848 MT4P47944 62 aa6.5□□□□□ -1.37
UPF1-207ENST00000599848 MT1MQ8N339 61 aa6.45□□□□□ -1.38
UPF1-207ENST00000599848 KRTAP20-1Q3LI63 56 aa6.41□□□□□ -1.38
UPF1-207ENST00000599848 EPPK1P58107 5090 aaKnown RBP6.41□□□□□ -1.38
UPF1-207ENST00000599848 LPAP08519 4548 aa6.35□□□□□ -1.39
UPF1-207ENST00000599848 KMT2CQ8NEZ4 4911 aaKnown RBP6.29□□□□□ -1.4
UPF1-207ENST00000599848 KRTAP19-2Q3LHN2 52 aa6.27□□□□□ -1.41
UPF1-207ENST00000599848 LCE1BQ5T7P3 118 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms