RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 DNAH1Q9P2D7 4330 aa6.05□□□□□ -1.44
LIG1-207ENST00000594759 KRTAP3-3Q9BYR6 98 aa6.01□□□□□ -1.45
LIG1-207ENST00000594759 TNP1P09430 55 aa6.01□□□□□ -1.45
LIG1-207ENST00000594759 LYSTQ99698 3801 aa5.99□□□□□ -1.45
LIG1-207ENST00000594759 DNAH5Q8TE73 4624 aa5.97□□□□□ -1.45
LIG1-207ENST00000594759 KMT2AQ03164 3969 aa5.96□□□□□ -1.45
LIG1-207ENST00000594759 DNAH3Q8TD57 4116 aa5.95□□□□□ -1.46
LIG1-207ENST00000594759 DNAH8Q96JB1 4490 aa5.94□□□□□ -1.46
LIG1-207ENST00000594759 VPS13DQ5THJ4 4388 aa5.94□□□□□ -1.46
LIG1-207ENST00000594759 FAT1Q14517 4588 aa5.93□□□□□ -1.46
LIG1-207ENST00000594759 LRP1BQ9NZR2 4599 aa5.86□□□□□ -1.47
LIG1-207ENST00000594759 KRTAP10-4P60372 401 aaPredicted RBP5.84□□□□□ -1.48
LIG1-207ENST00000594759 DNAH7Q8WXX0 4024 aa5.82□□□□□ -1.48
LIG1-207ENST00000594759 DNAH17Q9UFH2 4485 aa5.81□□□□□ -1.48
LIG1-207ENST00000594759 PRO2289Q9P1D8 64 aa5.8□□□□□ -1.48
LIG1-207ENST00000594759 DNAH2Q9P225 4427 aa5.8□□□□□ -1.48
LIG1-207ENST00000594759 DYNC1H1Q14204 4646 aaKnown RBP5.79□□□□□ -1.48
LIG1-207ENST00000594759 FRAS1Q86XX4 4008 aa5.79□□□□□ -1.48
LIG1-207ENST00000594759 KRTAP4-5Q9BYR2 181 aa5.79□□□□□ -1.48
LIG1-207ENST00000594759 MT1HL1P0DM35 61 aa5.76□□□□□ -1.49
LIG1-207ENST00000594759 KIAA1109Q2LD37 5005 aa5.72□□□□□ -1.49
LIG1-207ENST00000594759 DNAH6Q9C0G6 4158 aa5.71□□□□□ -1.5
LIG1-207ENST00000594759 MYCBP2O75592 4640 aa5.69□□□□□ -1.5
LIG1-207ENST00000594759 DYNC2H1Q8NCM8 4307 aaKnown RBP5.68□□□□□ -1.5
LIG1-207ENST00000594759 INE1O15225 51 aa5.67□□□□□ -1.5
LIG1-207ENST00000594759 RYR1P21817 5038 aa5.67□□□□□ -1.5
LIG1-207ENST00000594759 VPS13BQ7Z7G8 4022 aa5.65□□□□□ -1.51
LIG1-207ENST00000594759 HYDINQ4G0P3 5121 aa5.65□□□□□ -1.51
LIG1-207ENST00000594759 RYR3Q15413 4870 aa5.6□□□□□ -1.51
LIG1-207ENST00000594759 HECTD4Q9Y4D8 3996 aa5.59□□□□□ -1.51
LIG1-207ENST00000594759 PKHD1P08F94 4074 aa5.59□□□□□ -1.51
LIG1-207ENST00000594759 SACSQ9NZJ4 4579 aa5.59□□□□□ -1.51
LIG1-207ENST00000594759 LRP1Q07954 4544 aaKnown RBP5.59□□□□□ -1.52
LIG1-207ENST00000594759 FAT3Q8TDW7 4589 aa5.58□□□□□ -1.52
LIG1-207ENST00000594759 APOBP04114 4563 aaKnown RBP5.56□□□□□ -1.52
LIG1-207ENST00000594759 FAT2Q9NYQ8 4349 aa5.53□□□□□ -1.52
LIG1-207ENST00000594759 KMT2CQ8NEZ4 4911 aaKnown RBP5.52□□□□□ -1.53
LIG1-207ENST00000594759 LORP23490 312 aaPredicted RBP5.49□□□□□ -1.53
LIG1-207ENST00000594759 KRTAP10-10P60014 251 aa5.48□□□□□ -1.53
LIG1-207ENST00000594759 KRTAP17-1Q9BYP8 105 aa5.45□□□□□ -1.54
LIG1-207ENST00000594759 RYR2Q92736 4967 aa5.43□□□□□ -1.54
LIG1-207ENST00000594759 KRTAP23-1A1A580 65 aa5.38□□□□□ -1.55
LIG1-207ENST00000594759 LRP2P98164 4655 aa5.31□□□□□ -1.56
LIG1-207ENST00000594759 PKD1P98161 4303 aa5.3□□□□□ -1.56
LIG1-207ENST00000594759 HERC2O95714 4834 aa5.28□□□□□ -1.56
LIG1-207ENST00000594759 KRTAP4-1Q9BYQ7 146 aa5.27□□□□□ -1.57
LIG1-207ENST00000594759 HSPG2P98160 4391 aa5.23□□□□□ -1.57
LIG1-207ENST00000594759 EPPK1P58107 5090 aaKnown RBP5.18□□□□□ -1.58
LIG1-207ENST00000594759 LCE3AQ5TA76 89 aa5.17□□□□□ -1.58
LIG1-207ENST00000594759 SPRR5A0A1B0GTR4 108 aa5.16□□□□□ -1.58
LIG1-207ENST00000594759 LPAP08519 4548 aa5.1□□□□□ -1.59
LIG1-207ENST00000594759 KRTAP12-3P60328 96 aa5.05□□□□□ -1.6
LIG1-207ENST00000594759 ABCA13Q86UQ4 5058 aa5.03□□□□□ -1.6
LIG1-207ENST00000594759 BIRC6Q9NR09 4857 aa4.98□□□□□ -1.61
LIG1-207ENST00000594759 PKHD1L1Q86WI1 4243 aa4.97□□□□□ -1.61
LIG1-207ENST00000594759 KRTAP10-12P60413 245 aa4.95□□□□□ -1.62
LIG1-207ENST00000594759 PCLOQ9Y6V0 5065 aa4.92□□□□□ -1.62
LIG1-207ENST00000594759 TNXBP22105 4242 aa4.92□□□□□ -1.62
LIG1-207ENST00000594759 MT1HP80294 61 aa4.9□□□□□ -1.63
LIG1-207ENST00000594759 HERC1Q15751 4861 aa4.89□□□□□ -1.63
LIG1-207ENST00000594759 MUC2Q02817 5179 aa4.87□□□□□ -1.63
LIG1-207ENST00000594759 KRTAP8-1Q8IUC2 63 aa4.83□□□□□ -1.64
LIG1-207ENST00000594759 RNF213Q63HN8 5207 aa4.83□□□□□ -1.64
LIG1-207ENST00000594759 MT2AP02795 61 aa4.82□□□□□ -1.64
LIG1-207ENST00000594759 MT1FP04733 61 aa4.79□□□□□ -1.64
LIG1-207ENST00000594759 FAT4Q6V0I7 4981 aa4.72□□□□□ -1.65
LIG1-207ENST00000594759 SPRR2GQ9BYE4 73 aa4.71□□□□□ -1.65
LIG1-207ENST00000594759 UBR4Q5T4S7 5183 aa4.71□□□□□ -1.65
LIG1-207ENST00000594759 LCE2CQ5TA81 110 aa4.67□□□□□ -1.66
LIG1-207ENST00000594759 KRTAP19-1Q8IUB9 90 aa4.65□□□□□ -1.66
LIG1-207ENST00000594759 FSIP2Q5CZC0 6907 aa4.64□□□□□ -1.67
LIG1-207ENST00000594759 MUC17Q685J3 4493 aa4.63□□□□□ -1.67
LIG1-207ENST00000594759 KRTAP19-2Q3LHN2 52 aa4.61□□□□□ -1.67
LIG1-207ENST00000594759 LCE3CQ5T5A8 94 aa4.59□□□□□ -1.67
LIG1-207ENST00000594759 KRTAP9-8Q9BYQ0 159 aa4.56□□□□□ -1.68
LIG1-207ENST00000594759 FLGP20930 4061 aaPredicted RBP4.56□□□□□ -1.68
LIG1-207ENST00000594759 HMCN2Q8NDA2 5059 aa4.55□□□□□ -1.68
LIG1-207ENST00000594759 KRTAP10-5P60370 271 aa4.51□□□□□ -1.69
LIG1-207ENST00000594759 CRCT1Q9UGL9 99 aa4.5□□□□□ -1.69
LIG1-207ENST00000594759 KRTAP19-5Q3LI72 72 aa4.49□□□□□ -1.69
LIG1-207ENST00000594759 KRTAP10-7P60409 375 aaPredicted RBP4.47□□□□□ -1.69
LIG1-207ENST00000594759 MT1BP07438 61 aa4.44□□□□□ -1.7
LIG1-207ENST00000594759 KRTAP19-8Q3LI54 63 aa4.44□□□□□ -1.7
LIG1-207ENST00000594759 MT1XP80297 61 aa4.43□□□□□ -1.7
LIG1-207ENST00000594759 KRTAP9-3Q9BYQ3 159 aa4.39□□□□□ -1.71
LIG1-207ENST00000594759 KRTAP12-4P60329 112 aa4.34□□□□□ -1.71
LIG1-207ENST00000594759 KRTAP4-8A0A0G2JLE6 195 aa4.31□□□□□ -1.72
LIG1-207ENST00000594759 KRTAP4-8Q9BYQ9 185 aa4.31□□□□□ -1.72
LIG1-207ENST00000594759 LCE2BO14633 110 aa4.3□□□□□ -1.72
LIG1-207ENST00000594759 USH2AO75445 5202 aa4.22□□□□□ -1.73
LIG1-207ENST00000594759 KRTAP4-7Q9BYR0 210 aa4.19□□□□□ -1.74
LIG1-207ENST00000594759 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
LIG1-207ENST00000594759 KRTAP19-4Q3LI73 84 aa4.15□□□□□ -1.74
LIG1-207ENST00000594759 OBSCNQ5VST9 7968 aa4.14□□□□□ -1.75
LIG1-207ENST00000594759 KRTAP2-3P0C7H8 128 aa4.14□□□□□ -1.75
LIG1-207ENST00000594759 KRTAP2-4Q9BYR9 128 aa4.14□□□□□ -1.75
LIG1-207ENST00000594759 KRTAP2-1Q9BYU5 128 aa4.14□□□□□ -1.75
LIG1-207ENST00000594759 LCE2AQ5TA79 106 aaPredicted RBP4.12□□□□□ -1.75
LIG1-207ENST00000594759 SYNE1Q8NF91 8797 aaKnown RBP4.08□□□□□ -1.76
LIG1-207ENST00000594759 KRTAP9-6A8MVA2 160 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 134.2 ms