RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 NDUFC1O43677 76 aa7.36□□□□□ -1.23
ATG4D-211ENST00000589753 SPANXA2-OT1Q8N9U9 137 aa7.35□□□□□ -1.23
ATG4D-211ENST00000589753 KRTAP10-6P60371 365 aaPredicted RBP7.34□□□□□ -1.23
ATG4D-211ENST00000589753 LCA10Q71F78 164 aa7.34□□□□□ -1.23
ATG4D-211ENST00000589753 CYSTM1Q9H1C7 97 aa7.34□□□□□ -1.23
ATG4D-211ENST00000589753 H7BZZ5 65 aa7.31□□□□□ -1.24
ATG4D-211ENST00000589753 ACYP2P14621 99 aa7.3□□□□□ -1.24
ATG4D-211ENST00000589753 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
ATG4D-211ENST00000589753 CSAG1Q6PB30 78 aa7.27□□□□□ -1.25
ATG4D-211ENST00000589753 KRTAP9-8Q9BYQ0 159 aa7.21□□□□□ -1.26
ATG4D-211ENST00000589753 CHKB-CPT1BH3BT56 60 aa7.18□□□□□ -1.26
ATG4D-211ENST00000589753 MT2AP02795 61 aa7.16□□□□□ -1.26
ATG4D-211ENST00000589753 ATP5EP56381 51 aaPredicted RBP7.12□□□□□ -1.27
ATG4D-211ENST00000589753 COA5Q86WW8 74 aa7.12□□□□□ -1.27
ATG4D-211ENST00000589753 SPTSSBQ8NFR3 76 aa7.12□□□□□ -1.27
ATG4D-211ENST00000589753 MT1FP04733 61 aa7.11□□□□□ -1.27
ATG4D-211ENST00000589753 PCP4P48539 62 aa7.11□□□□□ -1.27
ATG4D-211ENST00000589753 TMEM258P61165 79 aa7.11□□□□□ -1.27
ATG4D-211ENST00000589753 KRTAP10-10P60014 251 aa7.1□□□□□ -1.27
ATG4D-211ENST00000589753 H0YAA0 97 aa7.06□□□□□ -1.28
ATG4D-211ENST00000589753 CRCT1Q9UGL9 99 aa7.05□□□□□ -1.28
ATG4D-211ENST00000589753 FSIP2Q5CZC0 6907 aa7.04□□□□□ -1.28
ATG4D-211ENST00000589753 ADM2Q7Z4H4 148 aa7.01□□□□□ -1.29
ATG4D-211ENST00000589753 KRTAP9-3Q9BYQ3 159 aa6.97□□□□□ -1.29
ATG4D-211ENST00000589753 P0C880 135 aa6.9□□□□□ -1.3
ATG4D-211ENST00000589753 CRIPTQ9P021 101 aa6.9□□□□□ -1.3
ATG4D-211ENST00000589753 SERP1Q9Y6X1 66 aa6.89□□□□□ -1.31
ATG4D-211ENST00000589753 LCE2BO14633 110 aa6.84□□□□□ -1.31
ATG4D-211ENST00000589753 SEC61GP60059 68 aa6.84□□□□□ -1.31
ATG4D-211ENST00000589753 KRTAP19-1Q8IUB9 90 aa6.84□□□□□ -1.31
ATG4D-211ENST00000589753 SPRR2GQ9BYE4 73 aa6.83□□□□□ -1.32
ATG4D-211ENST00000589753 R4GN34 69 aa6.8□□□□□ -1.32
ATG4D-211ENST00000589753 A0A1B0GU69 56 aa6.76□□□□□ -1.33
ATG4D-211ENST00000589753 M0QZ58 72 aa6.76□□□□□ -1.33
ATG4D-211ENST00000589753 LINC01558Q9Y6Z2 57 aa6.73□□□□□ -1.33
ATG4D-211ENST00000589753 KRTAP19-8Q3LI54 63 aa6.71□□□□□ -1.34
ATG4D-211ENST00000589753 RPS28P62857 69 aaKnown RBP6.69□□□□□ -1.34
ATG4D-211ENST00000589753 Q5VV11 94 aa6.69□□□□□ -1.34
ATG4D-211ENST00000589753 PRR15LQ9BU68 103 aa6.69□□□□□ -1.34
ATG4D-211ENST00000589753 A0A1B0GU33 70 aa6.67□□□□□ -1.34
ATG4D-211ENST00000589753 USH2AO75445 5202 aa6.67□□□□□ -1.34
ATG4D-211ENST00000589753 SMIM26A0A096LP01 95 aa6.65□□□□□ -1.34
ATG4D-211ENST00000589753 MT1BP07438 61 aa6.64□□□□□ -1.35
ATG4D-211ENST00000589753 KRTAP13-4Q3LI77 160 aa6.64□□□□□ -1.35
ATG4D-211ENST00000589753 LINC01554Q52M75 96 aa6.64□□□□□ -1.35
ATG4D-211ENST00000589753 V9GYY9 64 aa6.64□□□□□ -1.35
ATG4D-211ENST00000589753 KRTAP9-7A8MTY7 169 aa6.61□□□□□ -1.35
ATG4D-211ENST00000589753 Q1T7F1 81 aa6.61□□□□□ -1.35
ATG4D-211ENST00000589753 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.6□□□□□ -1.35
ATG4D-211ENST00000589753 SPATA8Q6RVD6 105 aa6.58□□□□□ -1.36
ATG4D-211ENST00000589753 PLAC4Q8WY50 150 aa6.54□□□□□ -1.36
ATG4D-211ENST00000589753 PSPHP1O15172 72 aa6.52□□□□□ -1.37
ATG4D-211ENST00000589753 KRTAP19-6Q3LI70 58 aa6.52□□□□□ -1.37
ATG4D-211ENST00000589753 A6NN06 94 aa6.51□□□□□ -1.37
ATG4D-211ENST00000589753 SSPOA2VEC9 5147 aa6.5□□□□□ -1.37
ATG4D-211ENST00000589753 A0A0D9SG42 100 aa6.5□□□□□ -1.37
ATG4D-211ENST00000589753 UQCR11O14957 56 aa6.48□□□□□ -1.37
ATG4D-211ENST00000589753 A8MU10 97 aa6.42□□□□□ -1.38
ATG4D-211ENST00000589753 KRTAP10-5P60370 271 aa6.4□□□□□ -1.38
ATG4D-211ENST00000589753 FCGBPQ9Y6R7 5405 aaPredicted RBP6.4□□□□□ -1.39
ATG4D-211ENST00000589753 MIR22HGQ0VDD5 57 aa6.38□□□□□ -1.39
ATG4D-211ENST00000589753 SPINT4Q6UDR6 99 aa6.38□□□□□ -1.39
ATG4D-211ENST00000589753 KRTAP12-1P59990 96 aa6.37□□□□□ -1.39
ATG4D-211ENST00000589753 PRO2289Q9P1D8 64 aa6.36□□□□□ -1.39
ATG4D-211ENST00000589753 MT1XP80297 61 aa6.35□□□□□ -1.39
ATG4D-211ENST00000589753 SVIPQ8NHG7 77 aa6.34□□□□□ -1.39
ATG4D-211ENST00000589753 A6NED7 52 aa6.33□□□□□ -1.4
ATG4D-211ENST00000589753 KRTAP12-2P59991 146 aa6.33□□□□□ -1.4
ATG4D-211ENST00000589753 CAMK2N1Q7Z7J9 78 aa6.32□□□□□ -1.4
ATG4D-211ENST00000589753 H3BS24 57 aa6.25□□□□□ -1.41
ATG4D-211ENST00000589753 SYNE2Q8WXH0 6885 aaKnown RBP6.25□□□□□ -1.41
ATG4D-211ENST00000589753 MACF1Q9UPN3 7388 aaKnown RBP6.24□□□□□ -1.41
ATG4D-211ENST00000589753 K7ERS5 55 aa6.17□□□□□ -1.42
ATG4D-211ENST00000589753 CDC42SE1Q9NRR8 79 aa6.16□□□□□ -1.42
ATG4D-211ENST00000589753 KRTAP10-7P60409 375 aaPredicted RBP6.07□□□□□ -1.44
ATG4D-211ENST00000589753 KRTAP6-3Q3LI67 103 aa6.05□□□□□ -1.44
ATG4D-211ENST00000589753 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
ATG4D-211ENST00000589753 KRTAP10-12P60413 245 aa6.03□□□□□ -1.44
ATG4D-211ENST00000589753 BRK1Q8WUW1 75 aa5.97□□□□□ -1.45
ATG4D-211ENST00000589753 NEBP20929 6669 aa5.97□□□□□ -1.45
ATG4D-211ENST00000589753 TNP1P09430 55 aa5.95□□□□□ -1.46
ATG4D-211ENST00000589753 KRTAP4-8A0A0G2JLE6 195 aa5.93□□□□□ -1.46
ATG4D-211ENST00000589753 KRTAP4-8Q9BYQ9 185 aa5.93□□□□□ -1.46
ATG4D-211ENST00000589753 KRTAP8-1Q8IUC2 63 aa5.9□□□□□ -1.46
ATG4D-211ENST00000589753 KMT2DO14686 5537 aa5.84□□□□□ -1.47
ATG4D-211ENST00000589753 ROMO1P60602 79 aa5.84□□□□□ -1.47
ATG4D-211ENST00000589753 KRTAP25-1Q3LHN0 102 aa5.84□□□□□ -1.47
ATG4D-211ENST00000589753 KRTAP5-9P26371 169 aa5.81□□□□□ -1.48
ATG4D-211ENST00000589753 MUC12Q9UKN1 5478 aa5.78□□□□□ -1.48
ATG4D-211ENST00000589753 LCE3AQ5TA76 89 aa5.76□□□□□ -1.49
ATG4D-211ENST00000589753 SPRR2FQ96RM1 72 aa5.76□□□□□ -1.49
ATG4D-211ENST00000589753 KRTAP20-1Q3LI63 56 aa5.74□□□□□ -1.49
ATG4D-211ENST00000589753 KRTAP19-7Q3SYF9 63 aa5.66□□□□□ -1.5
ATG4D-211ENST00000589753 KRTAP19-5Q3LI72 72 aa5.65□□□□□ -1.5
ATG4D-211ENST00000589753 KRTAP23-1A1A580 65 aa5.64□□□□□ -1.51
ATG4D-211ENST00000589753 PMAIP1Q13794 54 aa5.64□□□□□ -1.51
ATG4D-211ENST00000589753 PRO0628Q9UI54 55 aa5.63□□□□□ -1.51
ATG4D-211ENST00000589753 MDN1Q9NU22 5596 aa5.6□□□□□ -1.51
ATG4D-211ENST00000589753 MT1EP04732 61 aa5.6□□□□□ -1.51
ATG4D-211ENST00000589753 SPRR2EP22531 72 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms