RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 COA5Q86WW8 74 aa4.06□□□□□ -1.76
HERPUD1-209ENST00000564678 BRK1Q8WUW1 75 aa4.06□□□□□ -1.76
HERPUD1-209ENST00000564678 NDUFAF8A1L188 74 aa4.05□□□□□ -1.76
HERPUD1-209ENST00000564678 FAT1Q14517 4588 aa4.03□□□□□ -1.76
HERPUD1-209ENST00000564678 ACYP2P14621 99 aa4.03□□□□□ -1.76
HERPUD1-209ENST00000564678 LINC01554Q52M75 96 aa4.03□□□□□ -1.76
HERPUD1-209ENST00000564678 PKHD1L1Q86WI1 4243 aa4.02□□□□□ -1.77
HERPUD1-209ENST00000564678 HRES1P13985 223 aa4.02□□□□□ -1.77
HERPUD1-209ENST00000564678 DMAC1Q96GE9 116 aa4□□□□□ -1.77
HERPUD1-209ENST00000564678 K7ERS5 55 aa4□□□□□ -1.77
HERPUD1-209ENST00000564678 RETNLBQ9BQ08 111 aa3.99□□□□□ -1.77
HERPUD1-209ENST00000564678 EPPK1P58107 5090 aaKnown RBP3.98□□□□□ -1.77
HERPUD1-209ENST00000564678 C20orf166-AS1Q96NR2 134 aa3.98□□□□□ -1.77
HERPUD1-209ENST00000564678 LINC01558Q9Y6Z2 57 aa3.98□□□□□ -1.77
HERPUD1-209ENST00000564678 A8MUU9 505 aa3.97□□□□□ -1.77
HERPUD1-209ENST00000564678 Q5VV11 94 aa3.97□□□□□ -1.77
HERPUD1-209ENST00000564678 IGKV2D-30A0A075B6S6 120 aa3.96□□□□□ -1.78
HERPUD1-209ENST00000564678 C7orf65Q6ZTY9 151 aa3.96□□□□□ -1.78
HERPUD1-209ENST00000564678 HSPG2P98160 4391 aa3.96□□□□□ -1.78
HERPUD1-209ENST00000564678 KRTAP10-8P60410 259 aa3.95□□□□□ -1.78
HERPUD1-209ENST00000564678 PRR15LQ9BU68 103 aa3.95□□□□□ -1.78
HERPUD1-209ENST00000564678 CHKB-CPT1BH3BT56 60 aa3.95□□□□□ -1.78
HERPUD1-209ENST00000564678 Q5VSD8 79 aa3.94□□□□□ -1.78
HERPUD1-209ENST00000564678 C9orf92A6NGG3 77 aa3.93□□□□□ -1.78
HERPUD1-209ENST00000564678 FLG2Q5D862 2391 aaPredicted RBP3.92□□□□□ -1.78
HERPUD1-209ENST00000564678 BIRC6Q9NR09 4857 aa3.92□□□□□ -1.78
HERPUD1-209ENST00000564678 TNXBP22105 4242 aa3.91□□□□□ -1.78
HERPUD1-209ENST00000564678 RYR1P21817 5038 aa3.9□□□□□ -1.79
HERPUD1-209ENST00000564678 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
HERPUD1-209ENST00000564678 FAT3Q8TDW7 4589 aa3.88□□□□□ -1.79
HERPUD1-209ENST00000564678 KIAA1109Q2LD37 5005 aa3.88□□□□□ -1.79
HERPUD1-209ENST00000564678 LRP1Q07954 4544 aaKnown RBP3.87□□□□□ -1.79
HERPUD1-209ENST00000564678 SPINK7P58062 85 aa3.86□□□□□ -1.79
HERPUD1-209ENST00000564678 LCE5AQ5TCM9 118 aa3.86□□□□□ -1.79
HERPUD1-209ENST00000564678 CDC42SE1Q9NRR8 79 aa3.86□□□□□ -1.79
HERPUD1-209ENST00000564678 SPTSSBQ8NFR3 76 aa3.85□□□□□ -1.79
HERPUD1-209ENST00000564678 A0A1B0GU69 56 aa3.85□□□□□ -1.79
HERPUD1-209ENST00000564678 ATP11AUNQ6ZP68 121 aa3.84□□□□□ -1.79
HERPUD1-209ENST00000564678 DMBT1Q9UGM3 2413 aaPredicted RBP3.83□□□□□ -1.8
HERPUD1-209ENST00000564678 RPL37P61927 97 aaKnown RBP3.82□□□□□ -1.8
HERPUD1-209ENST00000564678 MYCBP2O75592 4640 aa3.82□□□□□ -1.8
HERPUD1-209ENST00000564678 MT1HL1P0DM35 61 aa3.82□□□□□ -1.8
HERPUD1-209ENST00000564678 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
HERPUD1-209ENST00000564678 COX6B2Q6YFQ2 88 aa3.81□□□□□ -1.8
HERPUD1-209ENST00000564678 A8MU10 97 aa3.8□□□□□ -1.8
HERPUD1-209ENST00000564678 KRTAP9-7A8MTY7 169 aa3.79□□□□□ -1.8
HERPUD1-209ENST00000564678 UQCR11O14957 56 aa3.79□□□□□ -1.8
HERPUD1-209ENST00000564678 HERC2O95714 4834 aa3.78□□□□□ -1.8
HERPUD1-209ENST00000564678 SPATA8Q6RVD6 105 aa3.77□□□□□ -1.81
HERPUD1-209ENST00000564678 TPRXLQ17RH7 258 aa3.75□□□□□ -1.81
HERPUD1-209ENST00000564678 MIR22HGQ0VDD5 57 aa3.74□□□□□ -1.81
HERPUD1-209ENST00000564678 ABCA13Q86UQ4 5058 aa3.74□□□□□ -1.81
HERPUD1-209ENST00000564678 A6NN06 94 aa3.72□□□□□ -1.81
HERPUD1-209ENST00000564678 KRTAP5-9P26371 169 aa3.72□□□□□ -1.81
HERPUD1-209ENST00000564678 KRTAP25-1Q3LHN0 102 aa3.71□□□□□ -1.82
HERPUD1-209ENST00000564678 PCLOQ9Y6V0 5065 aa3.7□□□□□ -1.82
HERPUD1-209ENST00000564678 A0A1B0GU33 70 aa3.68□□□□□ -1.82
HERPUD1-209ENST00000564678 ROMO1P60602 79 aa3.68□□□□□ -1.82
HERPUD1-209ENST00000564678 H1FX-AS1Q4G0G2 97 aa3.66□□□□□ -1.82
HERPUD1-209ENST00000564678 S4R3F8 94 aa3.66□□□□□ -1.82
HERPUD1-209ENST00000564678 LRP2P98164 4655 aa3.63□□□□□ -1.83
HERPUD1-209ENST00000564678 H0YAA0 97 aa3.63□□□□□ -1.83
HERPUD1-209ENST00000564678 HERC1Q15751 4861 aa3.6□□□□□ -1.83
HERPUD1-209ENST00000564678 LPAP08519 4548 aa3.6□□□□□ -1.83
HERPUD1-209ENST00000564678 KRTAP10-6P60371 365 aaPredicted RBP3.6□□□□□ -1.83
HERPUD1-209ENST00000564678 R4GN34 69 aa3.6□□□□□ -1.83
HERPUD1-209ENST00000564678 P0C880 135 aa3.58□□□□□ -1.84
HERPUD1-209ENST00000564678 CSAG1Q6PB30 78 aa3.58□□□□□ -1.84
HERPUD1-209ENST00000564678 KRTAP9-3Q9BYQ3 159 aa3.53□□□□□ -1.84
HERPUD1-209ENST00000564678 MUC17Q685J3 4493 aa3.52□□□□□ -1.85
HERPUD1-209ENST00000564678 KRTAP13-4Q3LI77 160 aa3.5□□□□□ -1.85
HERPUD1-209ENST00000564678 SPINT4Q6UDR6 99 aa3.5□□□□□ -1.85
HERPUD1-209ENST00000564678 M0QZ58 72 aa3.49□□□□□ -1.85
HERPUD1-209ENST00000564678 HMCN1Q96RW7 5635 aa3.49□□□□□ -1.85
HERPUD1-209ENST00000564678 HMCN2Q8NDA2 5059 aa3.48□□□□□ -1.85
HERPUD1-209ENST00000564678 KRTAP4-1Q9BYQ7 146 aa3.48□□□□□ -1.85
HERPUD1-209ENST00000564678 A0A0D9SG42 100 aa3.45□□□□□ -1.86
HERPUD1-209ENST00000564678 KRTAP19-2Q3LHN2 52 aa3.44□□□□□ -1.86
HERPUD1-209ENST00000564678 MUC2Q02817 5179 aa3.41□□□□□ -1.86
HERPUD1-209ENST00000564678 KRTAP12-1P59990 96 aa3.4□□□□□ -1.87
HERPUD1-209ENST00000564678 LCE1AQ5T7P2 110 aa3.4□□□□□ -1.87
HERPUD1-209ENST00000564678 PRO2289Q9P1D8 64 aa3.4□□□□□ -1.87
HERPUD1-209ENST00000564678 KRTAP12-2P59991 146 aa3.39□□□□□ -1.87
HERPUD1-209ENST00000564678 UBR4Q5T4S7 5183 aa3.37□□□□□ -1.87
HERPUD1-209ENST00000564678 FLGP20930 4061 aaPredicted RBP3.37□□□□□ -1.87
HERPUD1-209ENST00000564678 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
HERPUD1-209ENST00000564678 KRTAP5-4Q6L8H1 288 aa3.36□□□□□ -1.87
HERPUD1-209ENST00000564678 CRIPTQ9P021 101 aa3.32□□□□□ -1.88
HERPUD1-209ENST00000564678 RNF213Q63HN8 5207 aa3.32□□□□□ -1.88
HERPUD1-209ENST00000564678 FAT4Q6V0I7 4981 aa3.28□□□□□ -1.89
HERPUD1-209ENST00000564678 MT3P25713 68 aa3.24□□□□□ -1.89
HERPUD1-209ENST00000564678 KRTAP2-2Q9BYT5 123 aa3.21□□□□□ -1.9
HERPUD1-209ENST00000564678 C10orf95Q9H7T3 257 aa3.21□□□□□ -1.9
HERPUD1-209ENST00000564678 MT1HP80294 61 aa3.19□□□□□ -1.9
HERPUD1-209ENST00000564678 M0R2T5 61 aa3.19□□□□□ -1.9
HERPUD1-209ENST00000564678 SPRR2GQ9BYE4 73 aa3.18□□□□□ -1.9
HERPUD1-209ENST00000564678 PP632Q6XCG6 107 aa3.14□□□□□ -1.91
HERPUD1-209ENST00000564678 PLAC4Q8WY50 150 aa3.12□□□□□ -1.91
HERPUD1-209ENST00000564678 LCE3CQ5T5A8 94 aa3.11□□□□□ -1.91
HERPUD1-209ENST00000564678 MT2AP02795 61 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 156.5 ms