RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 IGKV2D-30A0A075B6S6 120 aa5.35□□□□□ -1.55
RTF1-206ENST00000560447 CHKB-CPT1BH3BT56 60 aa5.35□□□□□ -1.55
RTF1-206ENST00000560447 RETNLBQ9BQ08 111 aa5.33□□□□□ -1.56
RTF1-206ENST00000560447 KRTAP23-1A1A580 65 aa5.3□□□□□ -1.56
RTF1-206ENST00000560447 KRTAP10-8P60410 259 aa5.3□□□□□ -1.56
RTF1-206ENST00000560447 FAT3Q8TDW7 4589 aa5.28□□□□□ -1.56
RTF1-206ENST00000560447 KRTAP9-8Q9BYQ0 159 aa5.28□□□□□ -1.56
RTF1-206ENST00000560447 KMT2CQ8NEZ4 4911 aaKnown RBP5.28□□□□□ -1.56
RTF1-206ENST00000560447 A6NED7 52 aa5.27□□□□□ -1.57
RTF1-206ENST00000560447 CDC42SE1Q9NRR8 79 aa5.27□□□□□ -1.57
RTF1-206ENST00000560447 Q5VSD8 79 aa5.26□□□□□ -1.57
RTF1-206ENST00000560447 SPTSSBQ8NFR3 76 aa5.26□□□□□ -1.57
RTF1-206ENST00000560447 TNXBP22105 4242 aa5.24□□□□□ -1.57
RTF1-206ENST00000560447 C9orf92A6NGG3 77 aa5.24□□□□□ -1.57
RTF1-206ENST00000560447 ATP11AUNQ6ZP68 121 aa5.24□□□□□ -1.57
RTF1-206ENST00000560447 RYR1P21817 5038 aa5.24□□□□□ -1.57
RTF1-206ENST00000560447 HSPG2P98160 4391 aa5.23□□□□□ -1.57
RTF1-206ENST00000560447 KRTAP15-1Q3LI76 137 aa5.23□□□□□ -1.57
RTF1-206ENST00000560447 FLG2Q5D862 2391 aaPredicted RBP5.22□□□□□ -1.57
RTF1-206ENST00000560447 A0A1B0GU69 56 aa5.22□□□□□ -1.57
RTF1-206ENST00000560447 LCA10Q71F78 164 aa5.2□□□□□ -1.58
RTF1-206ENST00000560447 SPINK7P58062 85 aa5.18□□□□□ -1.58
RTF1-206ENST00000560447 RPL37P61927 97 aaKnown RBP5.16□□□□□ -1.58
RTF1-206ENST00000560447 RYR3Q15413 4870 aa5.15□□□□□ -1.58
RTF1-206ENST00000560447 UQCR11O14957 56 aa5.15□□□□□ -1.59
RTF1-206ENST00000560447 COX6B2Q6YFQ2 88 aa5.15□□□□□ -1.59
RTF1-206ENST00000560447 SEC61GP60059 68 aa5.14□□□□□ -1.59
RTF1-206ENST00000560447 PMAIP1Q13794 54 aa5.13□□□□□ -1.59
RTF1-206ENST00000560447 SPATA8Q6RVD6 105 aa5.13□□□□□ -1.59
RTF1-206ENST00000560447 LRP1Q07954 4544 aaKnown RBP5.12□□□□□ -1.59
RTF1-206ENST00000560447 A8MU10 97 aa5.1□□□□□ -1.59
RTF1-206ENST00000560447 MT1HL1P0DM35 61 aa5.1□□□□□ -1.59
RTF1-206ENST00000560447 A6NN06 94 aa5.08□□□□□ -1.6
RTF1-206ENST00000560447 MIR22HGQ0VDD5 57 aa5.08□□□□□ -1.6
RTF1-206ENST00000560447 TPRXLQ17RH7 258 aa5.05□□□□□ -1.6
RTF1-206ENST00000560447 KTN1-AS1Q86SY8 53 aa5.05□□□□□ -1.6
RTF1-206ENST00000560447 KIAA1109Q2LD37 5005 aa5.02□□□□□ -1.61
RTF1-206ENST00000560447 MYCBP2O75592 4640 aa5□□□□□ -1.61
RTF1-206ENST00000560447 DMBT1Q9UGM3 2413 aaPredicted RBP4.98□□□□□ -1.61
RTF1-206ENST00000560447 A0A1B0GU33 70 aa4.97□□□□□ -1.61
RTF1-206ENST00000560447 H1FX-AS1Q4G0G2 97 aa4.97□□□□□ -1.61
RTF1-206ENST00000560447 S4R3F8 94 aa4.95□□□□□ -1.62
RTF1-206ENST00000560447 EPPK1P58107 5090 aaKnown RBP4.93□□□□□ -1.62
RTF1-206ENST00000560447 RBM12B-AS1Q9P1G2 102 aa4.92□□□□□ -1.62
RTF1-206ENST00000560447 H0YAA0 97 aa4.91□□□□□ -1.62
RTF1-206ENST00000560447 SEC61BP60468 96 aaKnown RBP4.88□□□□□ -1.63
RTF1-206ENST00000560447 K7ERS5 55 aa4.86□□□□□ -1.63
RTF1-206ENST00000560447 KRTAP10-6P60371 365 aaPredicted RBP4.85□□□□□ -1.63
RTF1-206ENST00000560447 CSAG1Q6PB30 78 aa4.83□□□□□ -1.64
RTF1-206ENST00000560447 LRP2P98164 4655 aa4.81□□□□□ -1.64
RTF1-206ENST00000560447 MUC17Q685J3 4493 aa4.8□□□□□ -1.64
RTF1-206ENST00000560447 HERC2O95714 4834 aa4.8□□□□□ -1.64
RTF1-206ENST00000560447 BIRC6Q9NR09 4857 aa4.78□□□□□ -1.64
RTF1-206ENST00000560447 ABCA13Q86UQ4 5058 aa4.74□□□□□ -1.65
RTF1-206ENST00000560447 M0QZ58 72 aa4.74□□□□□ -1.65
RTF1-206ENST00000560447 ADM2Q7Z4H4 148 aa4.73□□□□□ -1.65
RTF1-206ENST00000560447 P0C880 135 aa4.72□□□□□ -1.65
RTF1-206ENST00000560447 LPAP08519 4548 aa4.72□□□□□ -1.65
RTF1-206ENST00000560447 KRTAP13-4Q3LI77 160 aa4.71□□□□□ -1.66
RTF1-206ENST00000560447 PRAC1Q96KF2 57 aa4.7□□□□□ -1.66
RTF1-206ENST00000560447 ROMO1P60602 79 aa4.67□□□□□ -1.66
RTF1-206ENST00000560447 LCE1AQ5T7P2 110 aa4.66□□□□□ -1.66
RTF1-206ENST00000560447 LINC01554Q52M75 96 aa4.63□□□□□ -1.67
RTF1-206ENST00000560447 A0A0D9SG42 100 aa4.62□□□□□ -1.67
RTF1-206ENST00000560447 KRTAP25-1Q3LHN0 102 aa4.62□□□□□ -1.67
RTF1-206ENST00000560447 KRTAP4-1Q9BYQ7 146 aa4.62□□□□□ -1.67
RTF1-206ENST00000560447 KRTAP19-2Q3LHN2 52 aa4.61□□□□□ -1.67
RTF1-206ENST00000560447 KRTAP12-1P59990 96 aa4.59□□□□□ -1.67
RTF1-206ENST00000560447 R4GN34 69 aa4.57□□□□□ -1.68
RTF1-206ENST00000560447 KRTAP12-2P59991 146 aa4.56□□□□□ -1.68
RTF1-206ENST00000560447 HERC1Q15751 4861 aa4.55□□□□□ -1.68
RTF1-206ENST00000560447 SPINT4Q6UDR6 99 aa4.53□□□□□ -1.68
RTF1-206ENST00000560447 FLGP20930 4061 aaPredicted RBP4.52□□□□□ -1.69
RTF1-206ENST00000560447 CRIPTQ9P021 101 aa4.52□□□□□ -1.69
RTF1-206ENST00000560447 HMCN2Q8NDA2 5059 aa4.51□□□□□ -1.69
RTF1-206ENST00000560447 PCLOQ9Y6V0 5065 aa4.47□□□□□ -1.69
RTF1-206ENST00000560447 KRTAP2-2Q9BYT5 123 aa4.34□□□□□ -1.71
RTF1-206ENST00000560447 C10orf95Q9H7T3 257 aa4.32□□□□□ -1.72
RTF1-206ENST00000560447 CAMK2N1Q7Z7J9 78 aa4.31□□□□□ -1.72
RTF1-206ENST00000560447 PP632Q6XCG6 107 aa4.29□□□□□ -1.72
RTF1-206ENST00000560447 SPRR2GQ9BYE4 73 aa4.29□□□□□ -1.72
RTF1-206ENST00000560447 MT1HP80294 61 aa4.26□□□□□ -1.73
RTF1-206ENST00000560447 KRTAP10-7P60409 375 aaPredicted RBP4.25□□□□□ -1.73
RTF1-206ENST00000560447 RNF213Q63HN8 5207 aa4.24□□□□□ -1.73
RTF1-206ENST00000560447 MUC2Q02817 5179 aa4.23□□□□□ -1.73
RTF1-206ENST00000560447 M0R2T5 61 aa4.23□□□□□ -1.73
RTF1-206ENST00000560447 KRTAP5-11Q6L8G4 156 aa4.23□□□□□ -1.73
RTF1-206ENST00000560447 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
RTF1-206ENST00000560447 PLAC4Q8WY50 150 aa4.2□□□□□ -1.74
RTF1-206ENST00000560447 TNP1P09430 55 aa4.19□□□□□ -1.74
RTF1-206ENST00000560447 MT2AP02795 61 aa4.17□□□□□ -1.74
RTF1-206ENST00000560447 FAT4Q6V0I7 4981 aa4.17□□□□□ -1.74
RTF1-206ENST00000560447 KRTAP10-10P60014 251 aa4.14□□□□□ -1.75
RTF1-206ENST00000560447 KRTAP19-8Q3LI54 63 aa4.14□□□□□ -1.75
RTF1-206ENST00000560447 MT1FP04733 61 aa4.13□□□□□ -1.75
RTF1-206ENST00000560447 UBR4Q5T4S7 5183 aa4.08□□□□□ -1.76
RTF1-206ENST00000560447 LCE1EQ5T753 118 aa4.08□□□□□ -1.76
RTF1-206ENST00000560447 MT1BP07438 61 aa4□□□□□ -1.77
RTF1-206ENST00000560447 MT3P25713 68 aa3.94□□□□□ -1.78
RTF1-206ENST00000560447 KRTAP10-5P60370 271 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms