RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 KRTAP19-4Q3LI73 84 aa3.82□□□□□ -1.8
SYNE3-205ENST00000557275 ANK2Q01484 3957 aa3.81□□□□□ -1.8
SYNE3-205ENST00000557275 LYSTQ99698 3801 aa3.8□□□□□ -1.8
SYNE3-205ENST00000557275 KRTAP10-5P60370 271 aa3.79□□□□□ -1.8
SYNE3-205ENST00000557275 DNAH3Q8TD57 4116 aa3.79□□□□□ -1.8
SYNE3-205ENST00000557275 VPS13DQ5THJ4 4388 aa3.78□□□□□ -1.8
SYNE3-205ENST00000557275 KRTAP3-2Q9BYR7 98 aa3.77□□□□□ -1.81
SYNE3-205ENST00000557275 DNAH11Q96DT5 4516 aa3.76□□□□□ -1.81
SYNE3-205ENST00000557275 DNAH10Q8IVF4 4471 aa3.74□□□□□ -1.81
SYNE3-205ENST00000557275 KRTAP3-3Q9BYR6 98 aa3.73□□□□□ -1.81
SYNE3-205ENST00000557275 LCE3AQ5TA76 89 aa3.72□□□□□ -1.81
SYNE3-205ENST00000557275 DNAH7Q8WXX0 4024 aa3.71□□□□□ -1.82
SYNE3-205ENST00000557275 DNAH6Q9C0G6 4158 aa3.69□□□□□ -1.82
SYNE3-205ENST00000557275 FRAS1Q86XX4 4008 aa3.69□□□□□ -1.82
SYNE3-205ENST00000557275 HECTD4Q9Y4D8 3996 aa3.69□□□□□ -1.82
SYNE3-205ENST00000557275 KRTAP8-1Q8IUC2 63 aa3.67□□□□□ -1.82
SYNE3-205ENST00000557275 VPS13BQ7Z7G8 4022 aa3.62□□□□□ -1.83
SYNE3-205ENST00000557275 DNAH17Q9UFH2 4485 aa3.6□□□□□ -1.83
SYNE3-205ENST00000557275 PLECQ15149 4684 aaKnown RBP3.58□□□□□ -1.84
SYNE3-205ENST00000557275 KMT2AQ03164 3969 aa3.58□□□□□ -1.84
SYNE3-205ENST00000557275 MT1HL1P0DM35 61 aa3.58□□□□□ -1.84
SYNE3-205ENST00000557275 FLGP20930 4061 aaPredicted RBP3.57□□□□□ -1.84
SYNE3-205ENST00000557275 KRTAP10-7P60409 375 aaPredicted RBP3.56□□□□□ -1.84
SYNE3-205ENST00000557275 DNAH9Q9NYC9 4486 aa3.54□□□□□ -1.84
SYNE3-205ENST00000557275 PRKDCP78527 4128 aaKnown RBP3.54□□□□□ -1.84
SYNE3-205ENST00000557275 DNAH8Q96JB1 4490 aa3.52□□□□□ -1.85
SYNE3-205ENST00000557275 MT3P25713 68 aa3.5□□□□□ -1.85
SYNE3-205ENST00000557275 SACSQ9NZJ4 4579 aa3.49□□□□□ -1.85
SYNE3-205ENST00000557275 DYNC2H1Q8NCM8 4307 aaKnown RBP3.45□□□□□ -1.86
SYNE3-205ENST00000557275 LCE3CQ5T5A8 94 aa3.44□□□□□ -1.86
SYNE3-205ENST00000557275 LORP23490 312 aaPredicted RBP3.43□□□□□ -1.86
SYNE3-205ENST00000557275 DYNC1H1Q14204 4646 aaKnown RBP3.42□□□□□ -1.86
SYNE3-205ENST00000557275 SPRR2GQ9BYE4 73 aa3.4□□□□□ -1.87
SYNE3-205ENST00000557275 APOBP04114 4563 aaKnown RBP3.39□□□□□ -1.87
SYNE3-205ENST00000557275 KRTAP4-5Q9BYR2 181 aa3.37□□□□□ -1.87
SYNE3-205ENST00000557275 FAT2Q9NYQ8 4349 aa3.35□□□□□ -1.87
SYNE3-205ENST00000557275 DNAH5Q8TE73 4624 aa3.35□□□□□ -1.87
SYNE3-205ENST00000557275 KRTAP10-4P60372 401 aaPredicted RBP3.35□□□□□ -1.87
SYNE3-205ENST00000557275 PKHD1L1Q86WI1 4243 aa3.34□□□□□ -1.87
SYNE3-205ENST00000557275 SPRR2FQ96RM1 72 aa3.31□□□□□ -1.88
SYNE3-205ENST00000557275 LRP1Q07954 4544 aaKnown RBP3.26□□□□□ -1.89
SYNE3-205ENST00000557275 KRTAP12-4P60329 112 aa3.26□□□□□ -1.89
SYNE3-205ENST00000557275 FAT1Q14517 4588 aa3.26□□□□□ -1.89
SYNE3-205ENST00000557275 KRTAP19-5Q3LI72 72 aa3.26□□□□□ -1.89
SYNE3-205ENST00000557275 PKD1P98161 4303 aa3.24□□□□□ -1.89
SYNE3-205ENST00000557275 FAT3Q8TDW7 4589 aa3.23□□□□□ -1.89
SYNE3-205ENST00000557275 PKHD1P08F94 4074 aa3.23□□□□□ -1.89
SYNE3-205ENST00000557275 MT1HP80294 61 aa3.22□□□□□ -1.89
SYNE3-205ENST00000557275 LRP1BQ9NZR2 4599 aa3.18□□□□□ -1.9
SYNE3-205ENST00000557275 MYCBP2O75592 4640 aa3.17□□□□□ -1.9
SYNE3-205ENST00000557275 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
SYNE3-205ENST00000557275 LCE2BO14633 110 aa3.13□□□□□ -1.91
SYNE3-205ENST00000557275 LCE3BQ5TA77 95 aa3.13□□□□□ -1.91
SYNE3-205ENST00000557275 HSPG2P98160 4391 aa3.12□□□□□ -1.91
SYNE3-205ENST00000557275 SPRR2EP22531 72 aa3.12□□□□□ -1.91
SYNE3-205ENST00000557275 SPRR2BP35325 72 aa3.12□□□□□ -1.91
SYNE3-205ENST00000557275 SPRR2AP35326 72 aa3.12□□□□□ -1.91
SYNE3-205ENST00000557275 TNXBP22105 4242 aa3.12□□□□□ -1.91
SYNE3-205ENST00000557275 MT2AP02795 61 aa3.11□□□□□ -1.91
SYNE3-205ENST00000557275 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
SYNE3-205ENST00000557275 SPRR2DP22532 72 aa3.09□□□□□ -1.92
SYNE3-205ENST00000557275 SPRR5A0A1B0GTR4 108 aa3.06□□□□□ -1.92
SYNE3-205ENST00000557275 STARD9Q9P2P6 4700 aa3.04□□□□□ -1.92
SYNE3-205ENST00000557275 DNHD1Q96M86 4753 aa3.04□□□□□ -1.92
SYNE3-205ENST00000557275 MT1GP13640 62 aa3.03□□□□□ -1.92
SYNE3-205ENST00000557275 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
SYNE3-205ENST00000557275 RYR3Q15413 4870 aa2.98□□□□□ -1.93
SYNE3-205ENST00000557275 MT1FP04733 61 aa2.98□□□□□ -1.93
SYNE3-205ENST00000557275 KRTAP4-1Q9BYQ7 146 aa2.97□□□□□ -1.93
SYNE3-205ENST00000557275 RYR1P21817 5038 aa2.94□□□□□ -1.94
SYNE3-205ENST00000557275 LCE2CQ5TA81 110 aa2.94□□□□□ -1.94
SYNE3-205ENST00000557275 BIRC6Q9NR09 4857 aa2.93□□□□□ -1.94
SYNE3-205ENST00000557275 MT1LQ93083 61 aa2.9□□□□□ -1.95
SYNE3-205ENST00000557275 RYR2Q92736 4967 aa2.88□□□□□ -1.95
SYNE3-205ENST00000557275 MT1XP80297 61 aa2.86□□□□□ -1.95
SYNE3-205ENST00000557275 LCE2DQ5TA82 110 aaPredicted RBP2.83□□□□□ -1.96
SYNE3-205ENST00000557275 KRTAP19-1Q8IUB9 90 aa2.83□□□□□ -1.96
SYNE3-205ENST00000557275 KRTAP19-3Q7Z4W3 81 aa2.8□□□□□ -1.96
SYNE3-205ENST00000557275 PRM1P04553 51 aa2.79□□□□□ -1.96
SYNE3-205ENST00000557275 LRP2P98164 4655 aa2.77□□□□□ -1.97
SYNE3-205ENST00000557275 MT1EP04732 61 aa2.73□□□□□ -1.97
SYNE3-205ENST00000557275 HERC2O95714 4834 aa2.73□□□□□ -1.97
SYNE3-205ENST00000557275 HERC1Q15751 4861 aa2.71□□□□□ -1.98
SYNE3-205ENST00000557275 KRTAP9-8Q9BYQ0 159 aa2.7□□□□□ -1.98
SYNE3-205ENST00000557275 MT1BP07438 61 aa2.67□□□□□ -1.98
SYNE3-205ENST00000557275 PCLOQ9Y6V0 5065 aa2.65□□□□□ -1.99
SYNE3-205ENST00000557275 MUC17Q685J3 4493 aa2.64□□□□□ -1.99
SYNE3-205ENST00000557275 HMCN2Q8NDA2 5059 aa2.64□□□□□ -1.99
SYNE3-205ENST00000557275 MT1MQ8N339 61 aa2.63□□□□□ -1.99
SYNE3-205ENST00000557275 MT4P47944 62 aa2.63□□□□□ -1.99
SYNE3-205ENST00000557275 KRTAP4-8A0A0G2JLE6 195 aa2.63□□□□□ -1.99
SYNE3-205ENST00000557275 KRTAP4-8Q9BYQ9 185 aa2.63□□□□□ -1.99
SYNE3-205ENST00000557275 KRTAP9-3Q9BYQ3 159 aa2.62□□□□□ -1.99
SYNE3-205ENST00000557275 HYDINQ4G0P3 5121 aa2.62□□□□□ -1.99
SYNE3-205ENST00000557275 KMT2CQ8NEZ4 4911 aaKnown RBP2.61□□□□□ -1.99
SYNE3-205ENST00000557275 LCE1DQ5T752 114 aa2.61□□□□□ -1.99
SYNE3-205ENST00000557275 KRTAP9-2Q9BYQ4 174 aa2.61□□□□□ -1.99
SYNE3-205ENST00000557275 LCE1BQ5T7P3 118 aa2.59□□□□□ -1.99
SYNE3-205ENST00000557275 MT1AP04731 61 aa2.58□□□□□ -2
SYNE3-205ENST00000557275 KRTAP20-1Q3LI63 56 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms