RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	ATM	Q13315	3056 aa		0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	PHGR1	C9JFL3	82 aa		0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	UTRN	P46939	3433 aa		0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	NBEAL1	Q6ZS30	2694 aa		0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	GCN1	Q92616	2671 aa	Known RBP	0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	FLNC	Q14315	2725 aa		0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	NBEAL2	Q6ZNJ1	2754 aa		0.54	□□□□□ -2.32
LEMD3-205	ENST00000544506	ATR	Q13535	2644 aa		0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	UNC79	Q9P2D8	2635 aa		0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	FREM2	Q5SZK8	3169 aa		0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	ITPR3	Q14573	2671 aa		0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506		M0R2T5	61 aa		0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	USP9Y	O00507	2555 aa	Predicted RBP	0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	NIPBL	Q6KC79	2804 aa	eCLIP	0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	COL7A1	Q02388	2944 aa		0.53	□□□□□ -2.32
LEMD3-205	ENST00000544506	TENM4	Q6N022	2769 aa		0.52	□□□□□ -2.33
LEMD3-205	ENST00000544506	PDZD2	O15018	2839 aa		0.52	□□□□□ -2.33
LEMD3-205	ENST00000544506	SPEG	Q15772	3267 aa		0.52	□□□□□ -2.33
LEMD3-205	ENST00000544506	DCHS1	Q96JQ0	3298 aa		0.52	□□□□□ -2.33
LEMD3-205	ENST00000544506	ANKRD11	Q6UB99	2663 aa	Predicted RBP	0.52	□□□□□ -2.33
LEMD3-205	ENST00000544506	ITPR2	Q14571	2701 aa		0.52	□□□□□ -2.33
LEMD3-205	ENST00000544506	NSD1	Q96L73	2696 aa	Predicted RBP	0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	MXRA5	Q9NR99	2828 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	UNC80	Q8N2C7	3258 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	HIVEP1	P15822	2718 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	IGSF10	Q6WRI0	2623 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	SMR3A	Q99954	134 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	STAB1	Q9NY15	2570 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	ZAN	Q9Y493	2812 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	STAB2	Q8WWQ8	2551 aa		0.51	□□□□□ -2.33
LEMD3-205	ENST00000544506	CELSR3	Q9NYQ7	3312 aa		0.5	□□□□□ -2.33
LEMD3-205	ENST00000544506	ADGRG4	Q8IZF6	3080 aa		0.5	□□□□□ -2.33
LEMD3-205	ENST00000544506	PKD1L1	Q8TDX9	2849 aa		0.5	□□□□□ -2.33
LEMD3-205	ENST00000544506	TEP1	Q99973	2627 aa	Known RBP	0.5	□□□□□ -2.33
LEMD3-205	ENST00000544506	MGAM2	Q2M2H8	2515 aa		0.49	□□□□□ -2.33
LEMD3-205	ENST00000544506	ZFHX4	Q86UP3	3567 aa		0.49	□□□□□ -2.33
LEMD3-205	ENST00000544506	SZT2	Q5T011	3432 aa		0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	LOC400499	M0QZD8	3231 aa		0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	MAST4	O15021	2626 aa		0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	FLNA	P21333	2647 aa	Known RBP	0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	KRTAP8-1	Q8IUC2	63 aa		0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	DMD	P11532	3685 aa		0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	DNAH14	Q0VDD8	3507 aa		0.48	□□□□□ -2.33
LEMD3-205	ENST00000544506	AKAP9	Q99996	3911 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	AHNAK	Q09666	5890 aa	Known RBP	0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	LAMA3	Q16787	3333 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	CSMD1	Q96PZ7	3565 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	EYS	Q5T1H1	3165 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	XIRP2	A4UGR9	3374 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	VCAN	P13611	3396 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	SPTBN5	Q9NRC6	3674 aa	Known RBP	0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	ASPM	Q8IZT6	3477 aa		0.47	□□□□□ -2.33
LEMD3-205	ENST00000544506	USP34	Q70CQ2	3546 aa		0.46	□□□□□ -2.34
LEMD3-205	ENST00000544506	NBPF19	A0A087WUL8	3843 aa		0.45	□□□□□ -2.34
LEMD3-205	ENST00000544506	FLNB	O75369	2602 aa	Known RBP	0.45	□□□□□ -2.34
LEMD3-205	ENST00000544506	WDFY3	Q8IZQ1	3526 aa		0.45	□□□□□ -2.34
LEMD3-205	ENST00000544506	TRRAP	Q9Y4A5	3859 aa		0.45	□□□□□ -2.34
LEMD3-205	ENST00000544506	LAMA5	O15230	3695 aa		0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	LYST	Q99698	3801 aa		0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	CDH23	Q9H251	3354 aa		0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	SMR3B	P02814	79 aa	Predicted RBP	0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	KRTAP2-3	P0C7H8	128 aa		0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	KRTAP2-4	Q9BYR9	128 aa		0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	KRTAP2-1	Q9BYU5	128 aa		0.44	□□□□□ -2.34
LEMD3-205	ENST00000544506	CMYA5	Q8N3K9	4069 aa		0.43	□□□□□ -2.34
LEMD3-205	ENST00000544506	SMG1	Q96Q15	3661 aa	Known RBP	0.43	□□□□□ -2.34
LEMD3-205	ENST00000544506	DNAH3	Q8TD57	4116 aa		0.43	□□□□□ -2.34
LEMD3-205	ENST00000544506	FRAS1	Q86XX4	4008 aa		0.43	□□□□□ -2.34
LEMD3-205	ENST00000544506	SPEN	Q96T58	3664 aa	Known RBP	0.43	□□□□□ -2.34
LEMD3-205	ENST00000544506	RELN	P78509	3460 aa		0.43	□□□□□ -2.34
LEMD3-205	ENST00000544506	HECTD4	Q9Y4D8	3996 aa		0.42	□□□□□ -2.34
LEMD3-205	ENST00000544506	VPS13D	Q5THJ4	4388 aa		0.42	□□□□□ -2.34
LEMD3-205	ENST00000544506	MUC3A	Q02505	3323 aa		0.42	□□□□□ -2.34
LEMD3-205	ENST00000544506	BSN	Q9UPA5	3926 aa		0.42	□□□□□ -2.34
LEMD3-205	ENST00000544506	BRCA2	P51587	3418 aa		0.42	□□□□□ -2.34
LEMD3-205	ENST00000544506	CSMD3	Q7Z407	3707 aa		0.41	□□□□□ -2.34
LEMD3-205	ENST00000544506	SPRR2G	Q9BYE4	73 aa		0.41	□□□□□ -2.34
LEMD3-205	ENST00000544506	CSMD2	Q7Z408	3487 aa		0.41	□□□□□ -2.34
LEMD3-205	ENST00000544506	FLG	P20930	4061 aa	Predicted RBP	0.4	□□□□□ -2.35
LEMD3-205	ENST00000544506	MT1A	P04731	61 aa		0.4	□□□□□ -2.35
LEMD3-205	ENST00000544506	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.4	□□□□□ -2.35
LEMD3-205	ENST00000544506	SVEP1	Q4LDE5	3571 aa		0.4	□□□□□ -2.35
LEMD3-205	ENST00000544506	MYO15A	Q9UKN7	3530 aa		0.39	□□□□□ -2.35
LEMD3-205	ENST00000544506	CUBN	O60494	3623 aa		0.39	□□□□□ -2.35
LEMD3-205	ENST00000544506	VPS13C	Q709C8	3753 aa		0.39	□□□□□ -2.35
LEMD3-205	ENST00000544506	DNAH6	Q9C0G6	4158 aa		0.39	□□□□□ -2.35
LEMD3-205	ENST00000544506	DNAH1	Q9P2D7	4330 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	ANK2	Q01484	3957 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	DYNC2H1	Q8NCM8	4307 aa	Known RBP	0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	VPS13B	Q7Z7G8	4022 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	PRM1	P04553	51 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	MT1E	P04732	61 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	KMT2A	Q03164	3969 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	PKD1	P98161	4303 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	DNAH7	Q8WXX0	4024 aa		0.38	□□□□□ -2.35
LEMD3-205	ENST00000544506	KRTAP19-8	Q3LI54	63 aa		0.37	□□□□□ -2.35
LEMD3-205	ENST00000544506	KRTAP19-5	Q3LI72	72 aa		0.37	□□□□□ -2.35
LEMD3-205	ENST00000544506	MT1L	Q93083	61 aa		0.37	□□□□□ -2.35
LEMD3-205	ENST00000544506	HSPG2	P98160	4391 aa		0.37	□□□□□ -2.35
LEMD3-205	ENST00000544506	HUWE1	Q7Z6Z7	4374 aa	Known RBP	0.37	□□□□□ -2.35

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