RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FBN1P35555 2871 aaKnown RBP3.56□□□□□ -1.84
VPS13D-211ENST00000543710 KRTAP8-1Q8IUC2 63 aa3.55□□□□□ -1.84
VPS13D-211ENST00000543710 DNAH3Q8TD57 4116 aa3.54□□□□□ -1.84
VPS13D-211ENST00000543710 KRTAP19-4Q3LI73 84 aa3.5□□□□□ -1.85
VPS13D-211ENST00000543710 CMYA5Q8N3K9 4069 aa3.49□□□□□ -1.85
VPS13D-211ENST00000543710 DNAH1Q9P2D7 4330 aa3.49□□□□□ -1.85
VPS13D-211ENST00000543710 KRTAP10-12P60413 245 aa3.48□□□□□ -1.85
VPS13D-211ENST00000543710 DNAH9Q9NYC9 4486 aa3.48□□□□□ -1.85
VPS13D-211ENST00000543710 DYNC2H1Q8NCM8 4307 aaKnown RBP3.48□□□□□ -1.85
VPS13D-211ENST00000543710 DNAH6Q9C0G6 4158 aa3.46□□□□□ -1.86
VPS13D-211ENST00000543710 ANK2Q01484 3957 aa3.45□□□□□ -1.86
VPS13D-211ENST00000543710 TRRAPQ9Y4A5 3859 aa3.44□□□□□ -1.86
VPS13D-211ENST00000543710 KRTAP10-4P60372 401 aaPredicted RBP3.43□□□□□ -1.86
VPS13D-211ENST00000543710 VPS13DQ5THJ4 4388 aa3.4□□□□□ -1.86
VPS13D-211ENST00000543710 DNAH10Q8IVF4 4471 aa3.4□□□□□ -1.87
VPS13D-211ENST00000543710 COL7A1Q02388 2944 aa3.4□□□□□ -1.87
VPS13D-211ENST00000543710 DNAH17Q9UFH2 4485 aa3.38□□□□□ -1.87
VPS13D-211ENST00000543710 CRCT1Q9UGL9 99 aa3.37□□□□□ -1.87
VPS13D-211ENST00000543710 SRRM2Q9UQ35 2752 aaKnown RBP3.37□□□□□ -1.87
VPS13D-211ENST00000543710 KRTAP9-6A0A140TA67 174 aa3.36□□□□□ -1.87
VPS13D-211ENST00000543710 FAT2Q9NYQ8 4349 aa3.36□□□□□ -1.87
VPS13D-211ENST00000543710 KRTAP12-3P60328 96 aa3.35□□□□□ -1.87
VPS13D-211ENST00000543710 SPRR2FQ96RM1 72 aa3.35□□□□□ -1.87
VPS13D-211ENST00000543710 PLECQ15149 4684 aaKnown RBP3.33□□□□□ -1.88
VPS13D-211ENST00000543710 TGP01266 2768 aa3.33□□□□□ -1.88
VPS13D-211ENST00000543710 DNAH8Q96JB1 4490 aa3.32□□□□□ -1.88
VPS13D-211ENST00000543710 SPRR2EP22531 72 aa3.32□□□□□ -1.88
VPS13D-211ENST00000543710 SPRR2BP35325 72 aa3.32□□□□□ -1.88
VPS13D-211ENST00000543710 SPRR2AP35326 72 aa3.32□□□□□ -1.88
VPS13D-211ENST00000543710 MYCBP2O75592 4640 aa3.32□□□□□ -1.88
VPS13D-211ENST00000543710 KRTAP17-1Q9BYP8 105 aa3.3□□□□□ -1.88
VPS13D-211ENST00000543710 DYNC1H1Q14204 4646 aaKnown RBP3.3□□□□□ -1.88
VPS13D-211ENST00000543710 LYSTQ99698 3801 aa3.29□□□□□ -1.88
VPS13D-211ENST00000543710 MT1HP80294 61 aa3.28□□□□□ -1.88
VPS13D-211ENST00000543710 DNAH7Q8WXX0 4024 aa3.28□□□□□ -1.88
VPS13D-211ENST00000543710 LCE3AQ5TA76 89 aa3.28□□□□□ -1.89
VPS13D-211ENST00000543710 SPRR2DP22532 72 aa3.26□□□□□ -1.89
VPS13D-211ENST00000543710 STARD9Q9P2P6 4700 aa3.25□□□□□ -1.89
VPS13D-211ENST00000543710 DNAH11Q96DT5 4516 aa3.25□□□□□ -1.89
VPS13D-211ENST00000543710 KRTAP9-2Q9BYQ4 174 aa3.24□□□□□ -1.89
VPS13D-211ENST00000543710 PRKDCP78527 4128 aaKnown RBP3.22□□□□□ -1.89
VPS13D-211ENST00000543710 HECTD4Q9Y4D8 3996 aa3.2□□□□□ -1.9
VPS13D-211ENST00000543710 HSPG2P98160 4391 aa3.2□□□□□ -1.9
VPS13D-211ENST00000543710 SACSQ9NZJ4 4579 aa3.19□□□□□ -1.9
VPS13D-211ENST00000543710 SPRR2GQ9BYE4 73 aa3.18□□□□□ -1.9
VPS13D-211ENST00000543710 DNAH5Q8TE73 4624 aa3.17□□□□□ -1.9
VPS13D-211ENST00000543710 MEGF8Q7Z7M0 2845 aa3.17□□□□□ -1.9
VPS13D-211ENST00000543710 HERC1Q15751 4861 aa3.15□□□□□ -1.9
VPS13D-211ENST00000543710 MT2AP02795 61 aa3.14□□□□□ -1.91
VPS13D-211ENST00000543710 PKHD1L1Q86WI1 4243 aa3.14□□□□□ -1.91
VPS13D-211ENST00000543710 KRTAP20-1Q3LI63 56 aa3.13□□□□□ -1.91
VPS13D-211ENST00000543710 KRTAP10-5P60370 271 aa3.12□□□□□ -1.91
VPS13D-211ENST00000543710 KMT2AQ03164 3969 aa3.12□□□□□ -1.91
VPS13D-211ENST00000543710 KRTAP12-4P60329 112 aa3.1□□□□□ -1.91
VPS13D-211ENST00000543710 FRAS1Q86XX4 4008 aa3.1□□□□□ -1.91
VPS13D-211ENST00000543710 KRTAP19-1Q8IUB9 90 aa3.1□□□□□ -1.91
VPS13D-211ENST00000543710 KRTAP9-7A8MTY7 169 aa3.08□□□□□ -1.92
VPS13D-211ENST00000543710 LRP1BQ9NZR2 4599 aa3.08□□□□□ -1.92
VPS13D-211ENST00000543710 SPRR5A0A1B0GTR4 108 aa3.06□□□□□ -1.92
VPS13D-211ENST00000543710 PKD1P98161 4303 aa3.05□□□□□ -1.92
VPS13D-211ENST00000543710 BIRC6Q9NR09 4857 aa3.05□□□□□ -1.92
VPS13D-211ENST00000543710 KRTAP9-9Q9BYP9 154 aa3.05□□□□□ -1.92
VPS13D-211ENST00000543710 KRTAP9-4Q9BYQ2 154 aa3.05□□□□□ -1.92
VPS13D-211ENST00000543710 VPS13BQ7Z7G8 4022 aa3.05□□□□□ -1.92
VPS13D-211ENST00000543710 APOBP04114 4563 aaKnown RBP3.03□□□□□ -1.92
VPS13D-211ENST00000543710 LCE3CQ5T5A8 94 aa3.03□□□□□ -1.92
VPS13D-211ENST00000543710 LCE4AQ5TA78 99 aa3.03□□□□□ -1.92
VPS13D-211ENST00000543710 MUC17Q685J3 4493 aa3.01□□□□□ -1.93
VPS13D-211ENST00000543710 KRTAP4-12Q9BQ66 201 aa3□□□□□ -1.93
VPS13D-211ENST00000543710 FAT1Q14517 4588 aa2.98□□□□□ -1.93
VPS13D-211ENST00000543710 MT1FP04733 61 aa2.98□□□□□ -1.93
VPS13D-211ENST00000543710 PCLOQ9Y6V0 5065 aa2.98□□□□□ -1.93
VPS13D-211ENST00000543710 KRTAP19-8Q3LI54 63 aa2.97□□□□□ -1.93
VPS13D-211ENST00000543710 FAT3Q8TDW7 4589 aa2.97□□□□□ -1.93
VPS13D-211ENST00000543710 LOC100996750A0A140TA64 210 aa2.97□□□□□ -1.93
VPS13D-211ENST00000543710 MT3P25713 68 aa2.97□□□□□ -1.93
VPS13D-211ENST00000543710 KRTAP4-6Q9BYQ5 205 aa2.97□□□□□ -1.93
VPS13D-211ENST00000543710 DNHD1Q96M86 4753 aa2.96□□□□□ -1.93
VPS13D-211ENST00000543710 HYDINQ4G0P3 5121 aa2.96□□□□□ -1.94
VPS13D-211ENST00000543710 PKHD1P08F94 4074 aa2.95□□□□□ -1.94
VPS13D-211ENST00000543710 RYR2Q92736 4967 aa2.95□□□□□ -1.94
VPS13D-211ENST00000543710 HERC2O95714 4834 aa2.94□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP4-1Q9BYQ7 146 aa2.94□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP9-3Q9BYQ3 159 aa2.93□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP2-3P0C7H8 128 aa2.93□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP2-4Q9BYR9 128 aa2.93□□□□□ -1.94
VPS13D-211ENST00000543710 LRP1Q07954 4544 aaKnown RBP2.93□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP4-8Q9BYQ9 185 aa2.92□□□□□ -1.94
VPS13D-211ENST00000543710 RYR1P21817 5038 aa2.91□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP19-5Q3LI72 72 aa2.91□□□□□ -1.94
VPS13D-211ENST00000543710 TNXBP22105 4242 aa2.91□□□□□ -1.94
VPS13D-211ENST00000543710 KRTAP6-3Q3LI67 103 aa2.87□□□□□ -1.95
VPS13D-211ENST00000543710 LCE3BQ5TA77 95 aa2.86□□□□□ -1.95
VPS13D-211ENST00000543710 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.86□□□□□ -1.95
VPS13D-211ENST00000543710 LCE5AQ5TCM9 118 aa2.86□□□□□ -1.95
VPS13D-211ENST00000543710 MT1GP13640 62 aa2.82□□□□□ -1.96
VPS13D-211ENST00000543710 KMT2CQ8NEZ4 4911 aaKnown RBP2.8□□□□□ -1.96
VPS13D-211ENST00000543710 KRTAP19-6Q3LI70 58 aa2.78□□□□□ -1.96
VPS13D-211ENST00000543710 KRTAP2-2Q9BYT5 123 aa2.78□□□□□ -1.96
VPS13D-211ENST00000543710 KRTAP2-1Q9BYU5 128 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms