RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 KRTAP1-4P0C5Y4 121 aa6.21□□□□□ -1.42
CDH4-201ENST00000543233 DYNC1H1Q14204 4646 aaKnown RBP6.18□□□□□ -1.42
CDH4-201ENST00000543233 A0A0D9SG42 100 aa6.18□□□□□ -1.42
CDH4-201ENST00000543233 SEC61BP60468 96 aaKnown RBP6.16□□□□□ -1.42
CDH4-201ENST00000543233 EPPK1P58107 5090 aaKnown RBP6.14□□□□□ -1.43
CDH4-201ENST00000543233 COX6B2Q6YFQ2 88 aa6.12□□□□□ -1.43
CDH4-201ENST00000543233 C9orf92A6NGG3 77 aa6.1□□□□□ -1.43
CDH4-201ENST00000543233 RPL37P61927 97 aaKnown RBP6.1□□□□□ -1.43
CDH4-201ENST00000543233 KIAA1109Q2LD37 5005 aa6.06□□□□□ -1.44
CDH4-201ENST00000543233 APOBP04114 4563 aaKnown RBP6.04□□□□□ -1.44
CDH4-201ENST00000543233 LRP1Q07954 4544 aaKnown RBP6□□□□□ -1.45
CDH4-201ENST00000543233 A0A1B0GVY2 172 aa5.99□□□□□ -1.45
CDH4-201ENST00000543233 MYCBP2O75592 4640 aa5.96□□□□□ -1.45
CDH4-201ENST00000543233 KRTAP10-4P60372 401 aaPredicted RBP5.92□□□□□ -1.46
CDH4-201ENST00000543233 HSPG2P98160 4391 aa5.9□□□□□ -1.47
CDH4-201ENST00000543233 KRTAP13-4Q3LI77 160 aa5.89□□□□□ -1.47
CDH4-201ENST00000543233 KRTAP17-1Q9BYP8 105 aa5.89□□□□□ -1.47
CDH4-201ENST00000543233 RYR1P21817 5038 aa5.89□□□□□ -1.47
CDH4-201ENST00000543233 KRTAP3-1Q9BYR8 98 aa5.88□□□□□ -1.47
CDH4-201ENST00000543233 S4R3F8 94 aa5.86□□□□□ -1.47
CDH4-201ENST00000543233 PKHD1L1Q86WI1 4243 aa5.86□□□□□ -1.47
CDH4-201ENST00000543233 Q5VSD8 79 aa5.85□□□□□ -1.47
CDH4-201ENST00000543233 RPS29P62273 56 aaKnown RBP5.84□□□□□ -1.47
CDH4-201ENST00000543233 KRTAP4-5Q9BYR2 181 aa5.8□□□□□ -1.48
CDH4-201ENST00000543233 BIRC6Q9NR09 4857 aa5.8□□□□□ -1.48
CDH4-201ENST00000543233 KRTAP12-2P59991 146 aa5.79□□□□□ -1.48
CDH4-201ENST00000543233 PLAC4Q8WY50 150 aa5.79□□□□□ -1.48
CDH4-201ENST00000543233 FAT3Q8TDW7 4589 aa5.78□□□□□ -1.48
CDH4-201ENST00000543233 ABCA13Q86UQ4 5058 aa5.77□□□□□ -1.49
CDH4-201ENST00000543233 KRTAP10-6P60371 365 aaPredicted RBP5.76□□□□□ -1.49
CDH4-201ENST00000543233 TNXBP22105 4242 aa5.75□□□□□ -1.49
CDH4-201ENST00000543233 HERC2O95714 4834 aa5.74□□□□□ -1.49
CDH4-201ENST00000543233 KRTAP10-8P60410 259 aa5.71□□□□□ -1.5
CDH4-201ENST00000543233 XP32Q5T750 250 aa5.7□□□□□ -1.5
CDH4-201ENST00000543233 PCLOQ9Y6V0 5065 aa5.67□□□□□ -1.5
CDH4-201ENST00000543233 KRTAP3-2Q9BYR7 98 aa5.65□□□□□ -1.5
CDH4-201ENST00000543233 KRTAP12-1P59990 96 aa5.64□□□□□ -1.51
CDH4-201ENST00000543233 LRP2P98164 4655 aa5.63□□□□□ -1.51
CDH4-201ENST00000543233 LPAP08519 4548 aa5.62□□□□□ -1.51
CDH4-201ENST00000543233 HERC1Q15751 4861 aa5.6□□□□□ -1.51
CDH4-201ENST00000543233 MT1HL1P0DM35 61 aa5.59□□□□□ -1.51
CDH4-201ENST00000543233 CAMK2N1Q7Z7J9 78 aa5.57□□□□□ -1.52
CDH4-201ENST00000543233 KRTAP3-3Q9BYR6 98 aa5.54□□□□□ -1.52
CDH4-201ENST00000543233 MUC2Q02817 5179 aa5.37□□□□□ -1.55
CDH4-201ENST00000543233 M0QZ58 72 aa5.37□□□□□ -1.55
CDH4-201ENST00000543233 PRO2289Q9P1D8 64 aa5.37□□□□□ -1.55
CDH4-201ENST00000543233 UBR4Q5T4S7 5183 aa5.3□□□□□ -1.56
CDH4-201ENST00000543233 R4GN34 69 aa5.28□□□□□ -1.56
CDH4-201ENST00000543233 RNF213Q63HN8 5207 aa5.28□□□□□ -1.56
CDH4-201ENST00000543233 HMCN2Q8NDA2 5059 aa5.27□□□□□ -1.57
CDH4-201ENST00000543233 KRTAP4-1Q9BYQ7 146 aa5.25□□□□□ -1.57
CDH4-201ENST00000543233 PP632Q6XCG6 107 aa5.23□□□□□ -1.57
CDH4-201ENST00000543233 MUC17Q685J3 4493 aa5.17□□□□□ -1.58
CDH4-201ENST00000543233 KRTAP23-1A1A580 65 aa5.17□□□□□ -1.58
CDH4-201ENST00000543233 LORP23490 312 aaPredicted RBP5.14□□□□□ -1.59
CDH4-201ENST00000543233 FAT4Q6V0I7 4981 aa5.11□□□□□ -1.59
CDH4-201ENST00000543233 INE1O15225 51 aa5.08□□□□□ -1.6
CDH4-201ENST00000543233 SPRR5A0A1B0GTR4 108 aa5□□□□□ -1.61
CDH4-201ENST00000543233 KRTAP19-2Q3LHN2 52 aa4.99□□□□□ -1.61
CDH4-201ENST00000543233 FLGP20930 4061 aaPredicted RBP4.97□□□□□ -1.61
CDH4-201ENST00000543233 TNP1P09430 55 aa4.94□□□□□ -1.62
CDH4-201ENST00000543233 M0R2T5 61 aa4.91□□□□□ -1.62
CDH4-201ENST00000543233 LCE2CQ5TA81 110 aa4.79□□□□□ -1.64
CDH4-201ENST00000543233 KRTAP10-10P60014 251 aa4.7□□□□□ -1.66
CDH4-201ENST00000543233 MT1HP80294 61 aa4.7□□□□□ -1.66
CDH4-201ENST00000543233 FSIP2Q5CZC0 6907 aa4.65□□□□□ -1.67
CDH4-201ENST00000543233 KRTAP19-1Q8IUB9 90 aa4.63□□□□□ -1.67
CDH4-201ENST00000543233 MT1FP04733 61 aa4.63□□□□□ -1.67
CDH4-201ENST00000543233 KRTAP9-6A0A140TA67 174 aa4.61□□□□□ -1.67
CDH4-201ENST00000543233 MT2AP02795 61 aa4.61□□□□□ -1.67
CDH4-201ENST00000543233 USH2AO75445 5202 aa4.6□□□□□ -1.67
CDH4-201ENST00000543233 LCE3AQ5TA76 89 aa4.58□□□□□ -1.68
CDH4-201ENST00000543233 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
CDH4-201ENST00000543233 LCE2DQ5TA82 110 aaPredicted RBP4.55□□□□□ -1.68
CDH4-201ENST00000543233 KRTAP9-8Q9BYQ0 159 aa4.55□□□□□ -1.68
CDH4-201ENST00000543233 LCE2AQ5TA79 106 aaPredicted RBP4.51□□□□□ -1.69
CDH4-201ENST00000543233 KMT2DO14686 5537 aa4.5□□□□□ -1.69
CDH4-201ENST00000543233 MT1BP07438 61 aa4.41□□□□□ -1.7
CDH4-201ENST00000543233 KRTAP19-8Q3LI54 63 aa4.36□□□□□ -1.71
CDH4-201ENST00000543233 MT1XP80297 61 aa4.35□□□□□ -1.71
CDH4-201ENST00000543233 KRTAP10-5P60370 271 aa4.35□□□□□ -1.71
CDH4-201ENST00000543233 KRTAP9-3Q9BYQ3 159 aa4.35□□□□□ -1.71
CDH4-201ENST00000543233 KRTAP12-3P60328 96 aa4.3□□□□□ -1.72
CDH4-201ENST00000543233 KRTAP10-7P60409 375 aaPredicted RBP4.3□□□□□ -1.72
CDH4-201ENST00000543233 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
CDH4-201ENST00000543233 KRTAP8-1Q8IUC2 63 aa4.28□□□□□ -1.72
CDH4-201ENST00000543233 KRTAP10-12P60413 245 aa4.28□□□□□ -1.72
CDH4-201ENST00000543233 KRTAP9-2Q9BYQ4 174 aa4.27□□□□□ -1.73
CDH4-201ENST00000543233 LCE2BO14633 110 aa4.26□□□□□ -1.73
CDH4-201ENST00000543233 SSPOA2VEC9 5147 aa4.23□□□□□ -1.73
CDH4-201ENST00000543233 DSTQ03001 7570 aaKnown RBP4.21□□□□□ -1.74
CDH4-201ENST00000543233 KRTAP4-8A0A0G2JLE6 195 aa4.14□□□□□ -1.75
CDH4-201ENST00000543233 KRTAP4-8Q9BYQ9 185 aa4.14□□□□□ -1.75
CDH4-201ENST00000543233 KRTAP19-5Q3LI72 72 aa4.09□□□□□ -1.75
CDH4-201ENST00000543233 FCGBPQ9Y6R7 5405 aaPredicted RBP4.05□□□□□ -1.76
CDH4-201ENST00000543233 CRCT1Q9UGL9 99 aa4.04□□□□□ -1.76
CDH4-201ENST00000543233 LCE3CQ5T5A8 94 aa4.03□□□□□ -1.76
CDH4-201ENST00000543233 SYNE1Q8NF91 8797 aaKnown RBP4.02□□□□□ -1.77
CDH4-201ENST00000543233 MACF1Q9UPN3 7388 aaKnown RBP3.96□□□□□ -1.78
CDH4-201ENST00000543233 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 128.7 ms