RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 DNAH3Q8TD57 4116 aa8.1□□□□□ -1.11
HDAC4-215ENST00000543185 DNAH7Q8WXX0 4024 aa8.08□□□□□ -1.12
HDAC4-215ENST00000543185 KRTAP10-5P60370 271 aa8.02□□□□□ -1.13
HDAC4-215ENST00000543185 HECTD4Q9Y4D8 3996 aa8.01□□□□□ -1.13
HDAC4-215ENST00000543185 ZNF469Q96JG9 3925 aaPredicted RBP7.96□□□□□ -1.14
HDAC4-215ENST00000543185 ANK2Q01484 3957 aa7.89□□□□□ -1.15
HDAC4-215ENST00000543185 KRTAP10-4P60372 401 aaPredicted RBP7.88□□□□□ -1.15
HDAC4-215ENST00000543185 KRTAP19-4Q3LI73 84 aa7.88□□□□□ -1.15
HDAC4-215ENST00000543185 KRTAP8-1Q8IUC2 63 aa7.83□□□□□ -1.16
HDAC4-215ENST00000543185 DNAH2Q9P225 4427 aa7.8□□□□□ -1.16
HDAC4-215ENST00000543185 VPS13BQ7Z7G8 4022 aa7.69□□□□□ -1.18
HDAC4-215ENST00000543185 DNAH1Q9P2D7 4330 aa7.68□□□□□ -1.18
HDAC4-215ENST00000543185 ANK3Q12955 4377 aaKnown RBP7.68□□□□□ -1.18
HDAC4-215ENST00000543185 DNAH6Q9C0G6 4158 aa7.66□□□□□ -1.18
HDAC4-215ENST00000543185 HUWE1Q7Z6Z7 4374 aaKnown RBP7.65□□□□□ -1.18
HDAC4-215ENST00000543185 LORP23490 312 aaPredicted RBP7.61□□□□□ -1.19
HDAC4-215ENST00000543185 KMT2AQ03164 3969 aa7.6□□□□□ -1.19
HDAC4-215ENST00000543185 SPRR2GQ9BYE4 73 aa7.57□□□□□ -1.2
HDAC4-215ENST00000543185 LCE3CQ5T5A8 94 aa7.52□□□□□ -1.21
HDAC4-215ENST00000543185 KRTAP10-7P60409 375 aaPredicted RBP7.46□□□□□ -1.22
HDAC4-215ENST00000543185 FRAS1Q86XX4 4008 aa7.46□□□□□ -1.22
HDAC4-215ENST00000543185 KRTAP4-5Q9BYR2 181 aa7.3□□□□□ -1.24
HDAC4-215ENST00000543185 KRTAP19-5Q3LI72 72 aa7.28□□□□□ -1.24
HDAC4-215ENST00000543185 MT1HP80294 61 aa7.17□□□□□ -1.26
HDAC4-215ENST00000543185 DNAH10Q8IVF4 4471 aa7.17□□□□□ -1.26
HDAC4-215ENST00000543185 FLGP20930 4061 aaPredicted RBP7.15□□□□□ -1.27
HDAC4-215ENST00000543185 PRKDCP78527 4128 aaKnown RBP7.14□□□□□ -1.27
HDAC4-215ENST00000543185 MT2AP02795 61 aa7.1□□□□□ -1.27
HDAC4-215ENST00000543185 SPRR2FQ96RM1 72 aa7.07□□□□□ -1.28
HDAC4-215ENST00000543185 FAT2Q9NYQ8 4349 aa6.97□□□□□ -1.29
HDAC4-215ENST00000543185 KRTAP4-1Q9BYQ7 146 aa6.95□□□□□ -1.3
HDAC4-215ENST00000543185 KRTAP12-4P60329 112 aa6.93□□□□□ -1.3
HDAC4-215ENST00000543185 SPRR5A0A1B0GTR4 108 aa6.91□□□□□ -1.3
HDAC4-215ENST00000543185 MT1FP04733 61 aa6.89□□□□□ -1.31
HDAC4-215ENST00000543185 DYNC2H1Q8NCM8 4307 aaKnown RBP6.87□□□□□ -1.31
HDAC4-215ENST00000543185 DNAH9Q9NYC9 4486 aa6.86□□□□□ -1.31
HDAC4-215ENST00000543185 DNAH11Q96DT5 4516 aa6.85□□□□□ -1.31
HDAC4-215ENST00000543185 LCE3BQ5TA77 95 aa6.81□□□□□ -1.32
HDAC4-215ENST00000543185 VPS13DQ5THJ4 4388 aa6.78□□□□□ -1.32
HDAC4-215ENST00000543185 KRTAP19-8Q3LI54 63 aa6.78□□□□□ -1.32
HDAC4-215ENST00000543185 DNAH8Q96JB1 4490 aa6.77□□□□□ -1.33
HDAC4-215ENST00000543185 DNAH17Q9UFH2 4485 aa6.7□□□□□ -1.34
HDAC4-215ENST00000543185 LCE3DQ9BYE3 92 aa6.66□□□□□ -1.34
HDAC4-215ENST00000543185 DNAH5Q8TE73 4624 aa6.66□□□□□ -1.34
HDAC4-215ENST00000543185 STARD9Q9P2P6 4700 aa6.65□□□□□ -1.34
HDAC4-215ENST00000543185 PKHD1P08F94 4074 aa6.65□□□□□ -1.34
HDAC4-215ENST00000543185 MT1XP80297 61 aa6.6□□□□□ -1.35
HDAC4-215ENST00000543185 LCE3EQ5T5B0 92 aa6.58□□□□□ -1.36
HDAC4-215ENST00000543185 KRTAP19-1Q8IUB9 90 aa6.58□□□□□ -1.36
HDAC4-215ENST00000543185 PKHD1L1Q86WI1 4243 aa6.55□□□□□ -1.36
HDAC4-215ENST00000543185 SPRR2EP22531 72 aa6.54□□□□□ -1.36
HDAC4-215ENST00000543185 SPRR2BP35325 72 aa6.54□□□□□ -1.36
HDAC4-215ENST00000543185 SPRR2AP35326 72 aa6.54□□□□□ -1.36
HDAC4-215ENST00000543185 MT1GP13640 62 aa6.53□□□□□ -1.36
HDAC4-215ENST00000543185 PLECQ15149 4684 aaKnown RBP6.52□□□□□ -1.37
HDAC4-215ENST00000543185 LCE2BO14633 110 aa6.51□□□□□ -1.37
HDAC4-215ENST00000543185 LRP1Q07954 4544 aaKnown RBP6.51□□□□□ -1.37
HDAC4-215ENST00000543185 MT3P25713 68 aa6.46□□□□□ -1.38
HDAC4-215ENST00000543185 SPRR2DP22532 72 aa6.41□□□□□ -1.38
HDAC4-215ENST00000543185 MT1LQ93083 61 aa6.33□□□□□ -1.4
HDAC4-215ENST00000543185 DYNC1H1Q14204 4646 aaKnown RBP6.27□□□□□ -1.41
HDAC4-215ENST00000543185 MT1BP07438 61 aa6.22□□□□□ -1.41
HDAC4-215ENST00000543185 LRP1BQ9NZR2 4599 aa6.21□□□□□ -1.41
HDAC4-215ENST00000543185 APOBP04114 4563 aaKnown RBP6.2□□□□□ -1.42
HDAC4-215ENST00000543185 PKD1P98161 4303 aa6.2□□□□□ -1.42
HDAC4-215ENST00000543185 KRTAP19-3Q7Z4W3 81 aa6.18□□□□□ -1.42
HDAC4-215ENST00000543185 HSPG2P98160 4391 aa6.13□□□□□ -1.43
HDAC4-215ENST00000543185 KRTAP9-8Q9BYQ0 159 aa6.13□□□□□ -1.43
HDAC4-215ENST00000543185 FAT1Q14517 4588 aa6.07□□□□□ -1.44
HDAC4-215ENST00000543185 PRM1P04553 51 aa6.06□□□□□ -1.44
HDAC4-215ENST00000543185 MT1EP04732 61 aa6.04□□□□□ -1.44
HDAC4-215ENST00000543185 SACSQ9NZJ4 4579 aa6.04□□□□□ -1.44
HDAC4-215ENST00000543185 KRTAP9-3Q9BYQ3 159 aa6.02□□□□□ -1.45
HDAC4-215ENST00000543185 TNXBP22105 4242 aa6.01□□□□□ -1.45
HDAC4-215ENST00000543185 LCE2CQ5TA81 110 aa6□□□□□ -1.45
HDAC4-215ENST00000543185 KRTAP4-8A0A0G2JLE6 195 aa5.98□□□□□ -1.45
HDAC4-215ENST00000543185 KRTAP4-8Q9BYQ9 185 aa5.98□□□□□ -1.45
HDAC4-215ENST00000543185 MYCBP2O75592 4640 aa5.87□□□□□ -1.47
HDAC4-215ENST00000543185 RYR1P21817 5038 aa5.82□□□□□ -1.48
HDAC4-215ENST00000543185 MT1MQ8N339 61 aa5.82□□□□□ -1.48
HDAC4-215ENST00000543185 LCE2DQ5TA82 110 aaPredicted RBP5.81□□□□□ -1.48
HDAC4-215ENST00000543185 KRTAP2-3P0C7H8 128 aa5.69□□□□□ -1.5
HDAC4-215ENST00000543185 KRTAP2-4Q9BYR9 128 aa5.69□□□□□ -1.5
HDAC4-215ENST00000543185 KRTAP2-1Q9BYU5 128 aa5.69□□□□□ -1.5
HDAC4-215ENST00000543185 FAT3Q8TDW7 4589 aa5.68□□□□□ -1.5
HDAC4-215ENST00000543185 KRTAP4-7Q9BYR0 210 aa5.66□□□□□ -1.5
HDAC4-215ENST00000543185 MT1AP04731 61 aa5.64□□□□□ -1.51
HDAC4-215ENST00000543185 LCE1DQ5T752 114 aa5.57□□□□□ -1.52
HDAC4-215ENST00000543185 RYR3Q15413 4870 aa5.56□□□□□ -1.52
HDAC4-215ENST00000543185 LCE1BQ5T7P3 118 aa5.51□□□□□ -1.53
HDAC4-215ENST00000543185 KRTAP19-6Q3LI70 58 aa5.51□□□□□ -1.53
HDAC4-215ENST00000543185 MT4P47944 62 aa5.51□□□□□ -1.53
HDAC4-215ENST00000543185 MUC17Q685J3 4493 aa5.5□□□□□ -1.53
HDAC4-215ENST00000543185 LOC100996750A0A140TA64 210 aa5.46□□□□□ -1.54
HDAC4-215ENST00000543185 DNHD1Q96M86 4753 aa5.46□□□□□ -1.54
HDAC4-215ENST00000543185 LRP2P98164 4655 aa5.42□□□□□ -1.54
HDAC4-215ENST00000543185 KRTAP19-2Q3LHN2 52 aa5.41□□□□□ -1.54
HDAC4-215ENST00000543185 KRTAP17-1Q9BYP8 105 aa5.32□□□□□ -1.56
HDAC4-215ENST00000543185 PCLOQ9Y6V0 5065 aa5.32□□□□□ -1.56
HDAC4-215ENST00000543185 KRTAP19-7Q3SYF9 63 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms