RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 DNAH1Q9P2D7 4330 aa6.11□□□□□ -1.43
USP3-204ENST00000540797 DNAH11Q96DT5 4516 aa6.11□□□□□ -1.43
USP3-204ENST00000540797 PLECQ15149 4684 aaKnown RBP6.09□□□□□ -1.43
USP3-204ENST00000540797 LORP23490 312 aaPredicted RBP6.06□□□□□ -1.44
USP3-204ENST00000540797 CSMD3Q7Z407 3707 aa6.06□□□□□ -1.44
USP3-204ENST00000540797 DNAH10Q8IVF4 4471 aa6.05□□□□□ -1.44
USP3-204ENST00000540797 CRCT1Q9UGL9 99 aa6.04□□□□□ -1.44
USP3-204ENST00000540797 KRTAP4-1Q9BYQ7 146 aa6.02□□□□□ -1.45
USP3-204ENST00000540797 KRTAP12-3P60328 96 aa6□□□□□ -1.45
USP3-204ENST00000540797 VPS13DQ5THJ4 4388 aa5.99□□□□□ -1.45
USP3-204ENST00000540797 DYNC1H1Q14204 4646 aaKnown RBP5.96□□□□□ -1.46
USP3-204ENST00000540797 MT1HP80294 61 aa5.95□□□□□ -1.46
USP3-204ENST00000540797 LCE3AQ5TA76 89 aa5.95□□□□□ -1.46
USP3-204ENST00000540797 DNAH17Q9UFH2 4485 aa5.93□□□□□ -1.46
USP3-204ENST00000540797 LRP1BQ9NZR2 4599 aa5.89□□□□□ -1.47
USP3-204ENST00000540797 KRTAP8-1Q8IUC2 63 aa5.88□□□□□ -1.47
USP3-204ENST00000540797 KRTAP23-1A1A580 65 aa5.88□□□□□ -1.47
USP3-204ENST00000540797 STARD9Q9P2P6 4700 aa5.86□□□□□ -1.47
USP3-204ENST00000540797 RYR1P21817 5038 aa5.85□□□□□ -1.47
USP3-204ENST00000540797 DNAH2Q9P225 4427 aa5.85□□□□□ -1.47
USP3-204ENST00000540797 MT2AP02795 61 aa5.83□□□□□ -1.48
USP3-204ENST00000540797 FAT1Q14517 4588 aa5.83□□□□□ -1.48
USP3-204ENST00000540797 FAT2Q9NYQ8 4349 aa5.81□□□□□ -1.48
USP3-204ENST00000540797 DYNC2H1Q8NCM8 4307 aaKnown RBP5.77□□□□□ -1.49
USP3-204ENST00000540797 PRKDCP78527 4128 aaKnown RBP5.76□□□□□ -1.49
USP3-204ENST00000540797 ANK2Q01484 3957 aa5.73□□□□□ -1.49
USP3-204ENST00000540797 SACSQ9NZJ4 4579 aa5.73□□□□□ -1.49
USP3-204ENST00000540797 DNAH3Q8TD57 4116 aa5.72□□□□□ -1.49
USP3-204ENST00000540797 SPRR2GQ9BYE4 73 aa5.71□□□□□ -1.5
USP3-204ENST00000540797 MT1FP04733 61 aa5.71□□□□□ -1.5
USP3-204ENST00000540797 KRTAP17-1Q9BYP8 105 aa5.63□□□□□ -1.51
USP3-204ENST00000540797 INE1O15225 51 aa5.62□□□□□ -1.51
USP3-204ENST00000540797 RYR3Q15413 4870 aa5.61□□□□□ -1.51
USP3-204ENST00000540797 DNAH8Q96JB1 4490 aa5.58□□□□□ -1.52
USP3-204ENST00000540797 KMT2AQ03164 3969 aa5.58□□□□□ -1.52
USP3-204ENST00000540797 APOBP04114 4563 aaKnown RBP5.57□□□□□ -1.52
USP3-204ENST00000540797 KIAA1109Q2LD37 5005 aa5.56□□□□□ -1.52
USP3-204ENST00000540797 VPS13BQ7Z7G8 4022 aa5.54□□□□□ -1.52
USP3-204ENST00000540797 SPRR2FQ96RM1 72 aa5.52□□□□□ -1.53
USP3-204ENST00000540797 KRTAP10-5P60370 271 aa5.49□□□□□ -1.53
USP3-204ENST00000540797 DNAH6Q9C0G6 4158 aa5.48□□□□□ -1.53
USP3-204ENST00000540797 LYSTQ99698 3801 aa5.46□□□□□ -1.53
USP3-204ENST00000540797 RYR2Q92736 4967 aa5.44□□□□□ -1.54
USP3-204ENST00000540797 KRTAP19-5Q3LI72 72 aa5.42□□□□□ -1.54
USP3-204ENST00000540797 FAT3Q8TDW7 4589 aa5.41□□□□□ -1.54
USP3-204ENST00000540797 CMYA5Q8N3K9 4069 aa5.4□□□□□ -1.55
USP3-204ENST00000540797 KRTAP10-7P60409 375 aaPredicted RBP5.38□□□□□ -1.55
USP3-204ENST00000540797 DNAH7Q8WXX0 4024 aa5.36□□□□□ -1.55
USP3-204ENST00000540797 BIRC6Q9NR09 4857 aa5.35□□□□□ -1.55
USP3-204ENST00000540797 MYCBP2O75592 4640 aa5.35□□□□□ -1.55
USP3-204ENST00000540797 KRTAP19-8Q3LI54 63 aa5.34□□□□□ -1.55
USP3-204ENST00000540797 KRTAP19-1Q8IUB9 90 aa5.33□□□□□ -1.56
USP3-204ENST00000540797 LRP1Q07954 4544 aaKnown RBP5.32□□□□□ -1.56
USP3-204ENST00000540797 HERC2O95714 4834 aa5.31□□□□□ -1.56
USP3-204ENST00000540797 LCE3CQ5T5A8 94 aa5.25□□□□□ -1.57
USP3-204ENST00000540797 KRTAP9-8Q9BYQ0 159 aa5.24□□□□□ -1.57
USP3-204ENST00000540797 SPRR2EP22531 72 aa5.21□□□□□ -1.58
USP3-204ENST00000540797 SPRR2BP35325 72 aa5.21□□□□□ -1.58
USP3-204ENST00000540797 SPRR2AP35326 72 aa5.21□□□□□ -1.58
USP3-204ENST00000540797 HSPG2P98160 4391 aa5.2□□□□□ -1.58
USP3-204ENST00000540797 HERC1Q15751 4861 aa5.2□□□□□ -1.58
USP3-204ENST00000540797 HECTD4Q9Y4D8 3996 aa5.2□□□□□ -1.58
USP3-204ENST00000540797 LCE2CQ5TA81 110 aa5.19□□□□□ -1.58
USP3-204ENST00000540797 KRTAP19-4Q3LI73 84 aa5.19□□□□□ -1.58
USP3-204ENST00000540797 MT1BP07438 61 aa5.18□□□□□ -1.58
USP3-204ENST00000540797 MT1XP80297 61 aa5.17□□□□□ -1.58
USP3-204ENST00000540797 FRAS1Q86XX4 4008 aa5.16□□□□□ -1.58
USP3-204ENST00000540797 HYDINQ4G0P3 5121 aa5.15□□□□□ -1.59
USP3-204ENST00000540797 PCLOQ9Y6V0 5065 aa5.13□□□□□ -1.59
USP3-204ENST00000540797 KRTAP9-3Q9BYQ3 159 aa5.13□□□□□ -1.59
USP3-204ENST00000540797 PKD1P98161 4303 aa5.12□□□□□ -1.59
USP3-204ENST00000540797 PKHD1L1Q86WI1 4243 aa5.08□□□□□ -1.6
USP3-204ENST00000540797 LRP2P98164 4655 aa5.06□□□□□ -1.6
USP3-204ENST00000540797 SPRR2DP22532 72 aa5.04□□□□□ -1.6
USP3-204ENST00000540797 PKHD1P08F94 4074 aa5□□□□□ -1.61
USP3-204ENST00000540797 LCE2BO14633 110 aa5□□□□□ -1.61
USP3-204ENST00000540797 KRTAP4-8A0A0G2JLE6 195 aa5□□□□□ -1.61
USP3-204ENST00000540797 KRTAP4-8Q9BYQ9 185 aa5□□□□□ -1.61
USP3-204ENST00000540797 KRTAP19-2Q3LHN2 52 aa4.94□□□□□ -1.62
USP3-204ENST00000540797 LPAP08519 4548 aa4.92□□□□□ -1.62
USP3-204ENST00000540797 MT1GP13640 62 aa4.92□□□□□ -1.62
USP3-204ENST00000540797 KMT2CQ8NEZ4 4911 aaKnown RBP4.87□□□□□ -1.63
USP3-204ENST00000540797 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
USP3-204ENST00000540797 KRTAP12-4P60329 112 aa4.84□□□□□ -1.63
USP3-204ENST00000540797 EPPK1P58107 5090 aaKnown RBP4.79□□□□□ -1.64
USP3-204ENST00000540797 TNXBP22105 4242 aa4.79□□□□□ -1.64
USP3-204ENST00000540797 KRTAP9-2Q9BYQ4 174 aa4.78□□□□□ -1.64
USP3-204ENST00000540797 KRTAP19-3Q7Z4W3 81 aa4.76□□□□□ -1.65
USP3-204ENST00000540797 ABCA13Q86UQ4 5058 aa4.76□□□□□ -1.65
USP3-204ENST00000540797 KRTAP19-6Q3LI70 58 aa4.71□□□□□ -1.66
USP3-204ENST00000540797 MUC17Q685J3 4493 aa4.71□□□□□ -1.66
USP3-204ENST00000540797 FLGP20930 4061 aaPredicted RBP4.69□□□□□ -1.66
USP3-204ENST00000540797 MT1LQ93083 61 aa4.68□□□□□ -1.66
USP3-204ENST00000540797 MT1EP04732 61 aa4.67□□□□□ -1.66
USP3-204ENST00000540797 LCE2AQ5TA79 106 aaPredicted RBP4.66□□□□□ -1.66
USP3-204ENST00000540797 LCE2DQ5TA82 110 aaPredicted RBP4.64□□□□□ -1.67
USP3-204ENST00000540797 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
USP3-204ENST00000540797 SPRR5A0A1B0GTR4 108 aa4.58□□□□□ -1.68
USP3-204ENST00000540797 FAT4Q6V0I7 4981 aa4.56□□□□□ -1.68
USP3-204ENST00000540797 UBR4Q5T4S7 5183 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 169.3 ms