RNA–Protein interactions for RNA: ENST00000539921.5

SNHG1-211, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 1,071 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-211ENST00000539921 KRTAP12-2P59991 146 aa3.09□□□□□ -1.91
SNHG1-211ENST00000539921 KRTAP10-11P60412 298 aa3.09□□□□□ -1.91
SNHG1-211ENST00000539921 A0A0D9SG42 100 aa3.08□□□□□ -1.92
SNHG1-211ENST00000539921 VPS13DQ5THJ4 4388 aa3.07□□□□□ -1.92
SNHG1-211ENST00000539921 NOTCH1P46531 2555 aa3.07□□□□□ -1.92
SNHG1-211ENST00000539921 SPRR5A0A1B0GTR4 108 aa3.05□□□□□ -1.92
SNHG1-211ENST00000539921 CMYA5Q8N3K9 4069 aa3.04□□□□□ -1.92
SNHG1-211ENST00000539921 KRTAP1-4P0C5Y4 121 aa3.03□□□□□ -1.92
SNHG1-211ENST00000539921 PRKDCP78527 4128 aaKnown RBP3.03□□□□□ -1.92
SNHG1-211ENST00000539921 DNAH3Q8TD57 4116 aa3.03□□□□□ -1.93
SNHG1-211ENST00000539921 TGP01266 2768 aa3.02□□□□□ -1.93
SNHG1-211ENST00000539921 DNAH8Q96JB1 4490 aa3.01□□□□□ -1.93
SNHG1-211ENST00000539921 KRTAP4-9Q9BYQ8 210 aa3□□□□□ -1.93
SNHG1-211ENST00000539921 TENM3Q9P273 2699 aa3□□□□□ -1.93
SNHG1-211ENST00000539921 KRTAP4-7Q9BYR0 210 aa2.99□□□□□ -1.93
SNHG1-211ENST00000539921 STAB2Q8WWQ8 2551 aa2.97□□□□□ -1.93
SNHG1-211ENST00000539921 KRTAP17-1Q9BYP8 105 aa2.96□□□□□ -1.94
SNHG1-211ENST00000539921 COL7A1Q02388 2944 aa2.96□□□□□ -1.94
SNHG1-211ENST00000539921 FRAS1Q86XX4 4008 aa2.95□□□□□ -1.94
SNHG1-211ENST00000539921 DNAH17Q9UFH2 4485 aa2.94□□□□□ -1.94
SNHG1-211ENST00000539921 KRTAP4-11Q9BYQ6 195 aa2.94□□□□□ -1.94
SNHG1-211ENST00000539921 R4GN34 69 aa2.94□□□□□ -1.94
SNHG1-211ENST00000539921 DNAH10Q8IVF4 4471 aa2.92□□□□□ -1.94
SNHG1-211ENST00000539921 DYNC2H1Q8NCM8 4307 aaKnown RBP2.92□□□□□ -1.94
SNHG1-211ENST00000539921 Q5VSD8 79 aa2.91□□□□□ -1.94
SNHG1-211ENST00000539921 DNAH7Q8WXX0 4024 aa2.9□□□□□ -1.94
SNHG1-211ENST00000539921 LYSTQ99698 3801 aa2.88□□□□□ -1.95
SNHG1-211ENST00000539921 CSMD3Q7Z407 3707 aa2.87□□□□□ -1.95
SNHG1-211ENST00000539921 DNAH6Q9C0G6 4158 aa2.86□□□□□ -1.95
SNHG1-211ENST00000539921 KRTAP10-8P60410 259 aa2.86□□□□□ -1.95
SNHG1-211ENST00000539921 KRTAP4-2Q9BYR5 136 aa2.86□□□□□ -1.95
SNHG1-211ENST00000539921 KMT2CQ8NEZ4 4911 aaKnown RBP2.86□□□□□ -1.95
SNHG1-211ENST00000539921 DMBT1Q9UGM3 2413 aaPredicted RBP2.85□□□□□ -1.95
SNHG1-211ENST00000539921 DNAH9Q9NYC9 4486 aa2.85□□□□□ -1.95
SNHG1-211ENST00000539921 C9orf92A6NGG3 77 aa2.84□□□□□ -1.95
SNHG1-211ENST00000539921 KRTAP4-5Q9BYR2 181 aa2.84□□□□□ -1.95
SNHG1-211ENST00000539921 STARD9Q9P2P6 4700 aa2.84□□□□□ -1.96
SNHG1-211ENST00000539921 HUWE1Q7Z6Z7 4374 aaKnown RBP2.83□□□□□ -1.96
SNHG1-211ENST00000539921 KRTAP9-8Q9BYQ0 159 aa2.83□□□□□ -1.96
SNHG1-211ENST00000539921 DNAH2Q9P225 4427 aa2.83□□□□□ -1.96
SNHG1-211ENST00000539921 DNAH11Q96DT5 4516 aa2.81□□□□□ -1.96
SNHG1-211ENST00000539921 RYR2Q92736 4967 aa2.81□□□□□ -1.96
SNHG1-211ENST00000539921 RYR3Q15413 4870 aa2.8□□□□□ -1.96
SNHG1-211ENST00000539921 HECTD4Q9Y4D8 3996 aa2.79□□□□□ -1.96
SNHG1-211ENST00000539921 KRTAP5-3Q6L8H2 238 aa2.78□□□□□ -1.96
SNHG1-211ENST00000539921 SACSQ9NZJ4 4579 aa2.77□□□□□ -1.97
SNHG1-211ENST00000539921 TNP1P09430 55 aa2.76□□□□□ -1.97
SNHG1-211ENST00000539921 KRTAP10-1P60331 282 aa2.74□□□□□ -1.97
SNHG1-211ENST00000539921 KMT2AQ03164 3969 aa2.73□□□□□ -1.97
SNHG1-211ENST00000539921 LCE1AQ5T7P2 110 aa2.73□□□□□ -1.97
SNHG1-211ENST00000539921 HYDINQ4G0P3 5121 aa2.72□□□□□ -1.97
SNHG1-211ENST00000539921 PLECQ15149 4684 aaKnown RBP2.72□□□□□ -1.97
SNHG1-211ENST00000539921 MT3P25713 68 aa2.71□□□□□ -1.98
SNHG1-211ENST00000539921 A0A1B0GVY2 172 aa2.7□□□□□ -1.98
SNHG1-211ENST00000539921 PKHD1L1Q86WI1 4243 aa2.69□□□□□ -1.98
SNHG1-211ENST00000539921 EPPK1P58107 5090 aaKnown RBP2.69□□□□□ -1.98
SNHG1-211ENST00000539921 BIRC6Q9NR09 4857 aa2.69□□□□□ -1.98
SNHG1-211ENST00000539921 MYCBP2O75592 4640 aa2.69□□□□□ -1.98
SNHG1-211ENST00000539921 PKHD1P08F94 4074 aa2.68□□□□□ -1.98
SNHG1-211ENST00000539921 FAT2Q9NYQ8 4349 aa2.65□□□□□ -1.99
SNHG1-211ENST00000539921 LRP1BQ9NZR2 4599 aa2.64□□□□□ -1.99
SNHG1-211ENST00000539921 LRP1Q07954 4544 aaKnown RBP2.62□□□□□ -1.99
SNHG1-211ENST00000539921 KRTAP10-4P60372 401 aaPredicted RBP2.62□□□□□ -1.99
SNHG1-211ENST00000539921 PCLOQ9Y6V0 5065 aa2.61□□□□□ -1.99
SNHG1-211ENST00000539921 PKD1P98161 4303 aa2.61□□□□□ -1.99
SNHG1-211ENST00000539921 APOBP04114 4563 aaKnown RBP2.6□□□□□ -1.99
SNHG1-211ENST00000539921 HERC2O95714 4834 aa2.6□□□□□ -1.99
SNHG1-211ENST00000539921 DNAH5Q8TE73 4624 aa2.6□□□□□ -1.99
SNHG1-211ENST00000539921 KIAA1109Q2LD37 5005 aa2.58□□□□□ -2
SNHG1-211ENST00000539921 VPS13BQ7Z7G8 4022 aa2.57□□□□□ -2
SNHG1-211ENST00000539921 RYR1P21817 5038 aa2.57□□□□□ -2
SNHG1-211ENST00000539921 TNXBP22105 4242 aa2.57□□□□□ -2
SNHG1-211ENST00000539921 DYNC1H1Q14204 4646 aaKnown RBP2.55□□□□□ -2
SNHG1-211ENST00000539921 ABCA13Q86UQ4 5058 aa2.54□□□□□ -2
SNHG1-211ENST00000539921 HSPG2P98160 4391 aa2.54□□□□□ -2
SNHG1-211ENST00000539921 KRTAP8-1Q8IUC2 63 aa2.53□□□□□ -2
SNHG1-211ENST00000539921 KRTAP10-10P60014 251 aa2.52□□□□□ -2.01
SNHG1-211ENST00000539921 KRTAP2-2Q9BYT5 123 aa2.51□□□□□ -2.01
SNHG1-211ENST00000539921 FAT3Q8TDW7 4589 aa2.48□□□□□ -2.01
SNHG1-211ENST00000539921 FLGP20930 4061 aaPredicted RBP2.46□□□□□ -2.02
SNHG1-211ENST00000539921 SMR3BP02814 79 aaPredicted RBP2.44□□□□□ -2.02
SNHG1-211ENST00000539921 FAT1Q14517 4588 aa2.43□□□□□ -2.02
SNHG1-211ENST00000539921 KRTAP10-12P60413 245 aa2.42□□□□□ -2.02
SNHG1-211ENST00000539921 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
SNHG1-211ENST00000539921 LCE3AQ5TA76 89 aa2.41□□□□□ -2.02
SNHG1-211ENST00000539921 HERC1Q15751 4861 aa2.41□□□□□ -2.02
SNHG1-211ENST00000539921 MT1HL1P0DM35 61 aa2.37□□□□□ -2.03
SNHG1-211ENST00000539921 HMCN2Q8NDA2 5059 aa2.35□□□□□ -2.03
SNHG1-211ENST00000539921 KRTAP2-3P0C7H8 128 aa2.35□□□□□ -2.03
SNHG1-211ENST00000539921 KRTAP10-5P60370 271 aa2.35□□□□□ -2.03
SNHG1-211ENST00000539921 SPRR2GQ9BYE4 73 aa2.35□□□□□ -2.03
SNHG1-211ENST00000539921 KRTAP2-4Q9BYR9 128 aa2.35□□□□□ -2.03
SNHG1-211ENST00000539921 KRTAP2-1Q9BYU5 128 aa2.35□□□□□ -2.03
SNHG1-211ENST00000539921 KRTAP12-3P60328 96 aa2.34□□□□□ -2.03
SNHG1-211ENST00000539921 UBR4Q5T4S7 5183 aa2.34□□□□□ -2.04
SNHG1-211ENST00000539921 KRTAP19-2Q3LHN2 52 aa2.32□□□□□ -2.04
SNHG1-211ENST00000539921 LRP2P98164 4655 aa2.25□□□□□ -2.05
SNHG1-211ENST00000539921 LCE3CQ5T5A8 94 aa2.25□□□□□ -2.05
SNHG1-211ENST00000539921 M0R2T5 61 aa2.24□□□□□ -2.05
SNHG1-211ENST00000539921 RNF213Q63HN8 5207 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms