RNA–Protein interactions for RNA: ENST00000539921.5

SNHG1-211, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 1,071 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-211ENST00000539921 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.33□□□□□ -1.241e-323■■■■□ 19.6
SNHG1-211ENST00000539921 DDX21Q9NR30 783 aaKnown RBP eCLIP6.81□□□□□ -1.321e-323■■■□□ 15.6
SNHG1-211ENST00000539921 AATFQ9NY61 560 aaKnown RBP eCLIP6.79□□□□□ -1.321e-323■■■□□ 16.4
SNHG1-211ENST00000539921 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.75□□□□□ -1.332e-85■□□□□ 9.7
SNHG1-211ENST00000539921 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.41□□□□□ -1.384e-59■■■□□ 16.1
SNHG1-211ENST00000539921 TRA2AQ13595 282 aaKnown RBP eCLIP5.6□□□□□ -1.512e-56■■■■□ 20.9
SNHG1-211ENST00000539921 PTBP1P26599 531 aaKnown RBP eCLIP6.1□□□□□ -1.433e-55■■□□□ 14.1
SNHG1-211ENST00000539921 SF3B4Q15427 424 aaKnown RBP eCLIP6.38□□□□□ -1.394e-47■■■■■ 46.5
SNHG1-211ENST00000539921 NIP7Q9Y221 180 aaKnown RBP eCLIP6.01□□□□□ -1.454e-44■■■■■ 26.8
SNHG1-211ENST00000539921 DKC1O60832 514 aaKnown RBP eCLIP6.47□□□□□ -1.371e-36■■□□□ 12.2
SNHG1-211ENST00000539921 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.89□□□□□ -1.157e-33■□□□□ 8.4
SNHG1-211ENST00000539921 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.36□□□□□ -1.236e-32■□□□□ 8.9
SNHG1-211ENST00000539921 GPKOWQ92917 476 aaPredicted RBP eCLIP5.98□□□□□ -1.452e-31■■■□□ 17.2
SNHG1-211ENST00000539921 NIPBLQ6KC79 2804 aaeCLIP3.32□□□□□ -1.889e-27■■■■□ 22.5
SNHG1-211ENST00000539921 UPF1Q92900 1129 aaKnown RBP eCLIP6.66□□□□□ -1.341e-26■□□□□ 8.6
SNHG1-211ENST00000539921 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.01□□□□□ -1.292e-26■□□□□ 8.9
SNHG1-211ENST00000539921 EFTUD2Q15029 972 aaKnown RBP eCLIP6.37□□□□□ -1.395e-23■■■■■ 44.5
SNHG1-211ENST00000539921 AARSP49588 968 aaKnown RBP eCLIP7.09□□□□□ -1.275e-21■□□□□ 9.8
SNHG1-211ENST00000539921 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.71□□□□□ -1.823e-19■■■■■ 82.1
SNHG1-211ENST00000539921 SF3A3Q12874 501 aaKnown RBP eCLIP6.28□□□□□ -1.46e-19■■■□□ 14.9
SNHG1-211ENST00000539921 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.77□□□□□ -1.331e-17■■■□□ 16.6
SNHG1-211ENST00000539921 SMNDC1O75940 238 aaKnown RBP eCLIP6.98□□□□□ -1.293e-14■■■■■ 31.4
SNHG1-211ENST00000539921 AQRO60306 1485 aaKnown RBP eCLIP7.58□□□□□ -1.23e-14■■■■■ 45.6
SNHG1-211ENST00000539921 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.88□□□□□ -1.316e-13■■□□□ 14.1
SNHG1-211ENST00000539921 KHSRPQ92945 711 aaKnown RBP eCLIP6.42□□□□□ -1.382e-12■■■□□ 16.9
SNHG1-211ENST00000539921 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.56□□□□□ -1.364e-12■□□□□ 10.4
SNHG1-211ENST00000539921 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.31□□□□□ -1.42e-11■■■■■ 65.7
SNHG1-211ENST00000539921 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.55□□□□□ -1.363e-11■□□□□ 8.9
SNHG1-211ENST00000539921 CDC40O60508 579 aaKnown RBP eCLIP5.6□□□□□ -1.515e-11■□□□□ 11.3
SNHG1-211ENST00000539921 ZRANB2O95218 330 aaKnown RBP eCLIP7.27□□□□□ -1.252e-9■■■■■ 30
SNHG1-211ENST00000539921 NOLC1Q14978 699 aaKnown RBP eCLIP7.46□□□□□ -1.226e-9■■■■■ 28.9
SNHG1-211ENST00000539921 RBM22Q9NW64 420 aaKnown RBP eCLIP5.82□□□□□ -1.481e-8■■■□□ 18.1
SNHG1-211ENST00000539921 SLBPQ14493 270 aaKnown RBP eCLIP5.66□□□□□ -1.52e-8■□□□□ 9.6
SNHG1-211ENST00000539921 U2AF2P26368 475 aaKnown RBP eCLIP7.43□□□□□ -1.222e-8■■■■□ 21.3
SNHG1-211ENST00000539921 U2AF1Q01081 240 aaKnown RBP eCLIP6.75□□□□□ -1.336e-8■■■□□ 17.5
SNHG1-211ENST00000539921 SF3B1O75533 1304 aaKnown RBP eCLIP6.46□□□□□ -1.382e-7■■■■■ 35.3
SNHG1-211ENST00000539921 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.77□□□□□ -1.333e-7■■■■■ 36.2
SNHG1-211ENST00000539921 ZC3H11AO75152 810 aaKnown RBP eCLIP6.54□□□□□ -1.361e-6■■□□□ 11.7
SNHG1-211ENST00000539921 LSM11P83369 360 aaKnown RBP eCLIP5.97□□□□□ -1.451e-6■□□□□ 9.9
SNHG1-211ENST00000539921 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.91□□□□□ -1.461e-6■■□□□ 14.4
SNHG1-211ENST00000539921 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.22□□□□□ -1.572e-6■■■■■ 41.6
SNHG1-211ENST00000539921 TIA1P31483 386 aaKnown RBP eCLIP5.49□□□□□ -1.534e-6■■■■□ 22.9
SNHG1-211ENST00000539921 DDX42Q86XP3 938 aaKnown RBP eCLIP6.67□□□□□ -1.347e-6■■■□□ 16.5
Retrieved 43 of 43 RNA–protein pairs in 15.6 ms