RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 CSAG1Q6PB30 78 aa10.04□□□□□ -0.8
CAPN1-220ENST00000530567 C20orf197Q8N268 126 aa10.04□□□□□ -0.8
CAPN1-220ENST00000530567 DMAC1Q96GE9 116 aa10.04□□□□□ -0.8
CAPN1-220ENST00000530567 COX7CP15954 63 aa9.97□□□□□ -0.81
CAPN1-220ENST00000530567 KRTAP9-3Q9BYQ3 159 aa9.97□□□□□ -0.81
CAPN1-220ENST00000530567 NDUFC1O43677 76 aa9.92□□□□□ -0.82
CAPN1-220ENST00000530567 SPANXA2-OT1Q8N9U9 137 aa9.86□□□□□ -0.83
CAPN1-220ENST00000530567 ANAPC13Q9BS18 74 aa9.84□□□□□ -0.83
CAPN1-220ENST00000530567 LCE2BO14633 110 aa9.82□□□□□ -0.84
CAPN1-220ENST00000530567 ACYP2P14621 99 aa9.82□□□□□ -0.84
CAPN1-220ENST00000530567 CYSTM1Q9H1C7 97 aa9.82□□□□□ -0.84
CAPN1-220ENST00000530567 FSIP2Q5CZC0 6907 aa9.81□□□□□ -0.84
CAPN1-220ENST00000530567 H0YAA0 97 aa9.76□□□□□ -0.85
CAPN1-220ENST00000530567 USH2AO75445 5202 aa9.75□□□□□ -0.85
CAPN1-220ENST00000530567 H7BZZ5 65 aa9.74□□□□□ -0.85
CAPN1-220ENST00000530567 CRCT1Q9UGL9 99 aa9.7□□□□□ -0.86
CAPN1-220ENST00000530567 KRTAP19-1Q8IUB9 90 aa9.69□□□□□ -0.86
CAPN1-220ENST00000530567 CCDC179H3BU77 68 aa9.68□□□□□ -0.86
CAPN1-220ENST00000530567 KRTAP9-6A0A140TA67 174 aa9.67□□□□□ -0.86
CAPN1-220ENST00000530567 ADM2Q7Z4H4 148 aa9.65□□□□□ -0.86
CAPN1-220ENST00000530567 CHKB-CPT1BH3BT56 60 aa9.63□□□□□ -0.87
CAPN1-220ENST00000530567 SPRR2GQ9BYE4 73 aa9.62□□□□□ -0.87
CAPN1-220ENST00000530567 SPTSSBQ8NFR3 76 aa9.58□□□□□ -0.88
CAPN1-220ENST00000530567 CRIPTQ9P021 101 aa9.57□□□□□ -0.88
CAPN1-220ENST00000530567 COA5Q86WW8 74 aa9.56□□□□□ -0.88
CAPN1-220ENST00000530567 KRTAP3-2Q9BYR7 98 aa9.56□□□□□ -0.88
CAPN1-220ENST00000530567 SSPOA2VEC9 5147 aa9.56□□□□□ -0.88
CAPN1-220ENST00000530567 P0C880 135 aa9.54□□□□□ -0.88
CAPN1-220ENST00000530567 KRTAP19-8Q3LI54 63 aa9.49□□□□□ -0.89
CAPN1-220ENST00000530567 MT1BP07438 61 aa9.44□□□□□ -0.9
CAPN1-220ENST00000530567 Q5VV11 94 aa9.39□□□□□ -0.91
CAPN1-220ENST00000530567 KRTAP19-6Q3LI70 58 aa9.39□□□□□ -0.91
CAPN1-220ENST00000530567 ATP5EP56381 51 aaPredicted RBP9.37□□□□□ -0.91
CAPN1-220ENST00000530567 R4GN34 69 aa9.34□□□□□ -0.91
CAPN1-220ENST00000530567 TMEM258P61165 79 aa9.31□□□□□ -0.92
CAPN1-220ENST00000530567 M0QZ58 72 aa9.31□□□□□ -0.92
CAPN1-220ENST00000530567 FCGBPQ9Y6R7 5405 aaPredicted RBP9.3□□□□□ -0.92
CAPN1-220ENST00000530567 SVIPQ8NHG7 77 aa9.24□□□□□ -0.93
CAPN1-220ENST00000530567 LINC01554Q52M75 96 aa9.14□□□□□ -0.95
CAPN1-220ENST00000530567 SEC61GP60059 68 aa9.13□□□□□ -0.95
CAPN1-220ENST00000530567 KRTAP13-4Q3LI77 160 aa9.13□□□□□ -0.95
CAPN1-220ENST00000530567 SERP1Q9Y6X1 66 aa9.12□□□□□ -0.95
CAPN1-220ENST00000530567 KRTAP10-5P60370 271 aa9.1□□□□□ -0.95
CAPN1-220ENST00000530567 A6NN06 94 aa9.08□□□□□ -0.96
CAPN1-220ENST00000530567 PLAC4Q8WY50 150 aa9.05□□□□□ -0.96
CAPN1-220ENST00000530567 PCP4P48539 62 aa9.04□□□□□ -0.96
CAPN1-220ENST00000530567 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.03□□□□□ -0.96
CAPN1-220ENST00000530567 A0A1B0GU69 56 aa9.02□□□□□ -0.97
CAPN1-220ENST00000530567 A0A1B0GU33 70 aa8.98□□□□□ -0.97
CAPN1-220ENST00000530567 MT1XP80297 61 aa8.97□□□□□ -0.97
CAPN1-220ENST00000530567 LINC01558Q9Y6Z2 57 aa8.96□□□□□ -0.98
CAPN1-220ENST00000530567 MACF1Q9UPN3 7388 aaKnown RBP8.94□□□□□ -0.98
CAPN1-220ENST00000530567 SPATA8Q6RVD6 105 aa8.93□□□□□ -0.98
CAPN1-220ENST00000530567 PRO2289Q9P1D8 64 aa8.87□□□□□ -0.99
CAPN1-220ENST00000530567 PRR15LQ9BU68 103 aa8.86□□□□□ -0.99
CAPN1-220ENST00000530567 A0A0D9SG42 100 aa8.83□□□□□ -1
CAPN1-220ENST00000530567 SYNE2Q8WXH0 6885 aaKnown RBP8.75□□□□□ -1.01
CAPN1-220ENST00000530567 KRTAP9-7A8MTY7 169 aa8.75□□□□□ -1.01
CAPN1-220ENST00000530567 KRTAP12-1P59990 96 aa8.71□□□□□ -1.01
CAPN1-220ENST00000530567 SMIM26A0A096LP01 95 aa8.71□□□□□ -1.02
CAPN1-220ENST00000530567 A8MU10 97 aa8.71□□□□□ -1.02
CAPN1-220ENST00000530567 Q1T7F1 81 aa8.68□□□□□ -1.02
CAPN1-220ENST00000530567 V9GYY9 64 aa8.66□□□□□ -1.02
CAPN1-220ENST00000530567 KRTAP12-2P59991 146 aa8.65□□□□□ -1.02
CAPN1-220ENST00000530567 RPS28P62857 69 aaKnown RBP8.65□□□□□ -1.02
CAPN1-220ENST00000530567 SPINT4Q6UDR6 99 aa8.65□□□□□ -1.02
CAPN1-220ENST00000530567 CAMK2N1Q7Z7J9 78 aa8.65□□□□□ -1.02
CAPN1-220ENST00000530567 UQCR11O14957 56 aa8.61□□□□□ -1.03
CAPN1-220ENST00000530567 PSPHP1O15172 72 aa8.59□□□□□ -1.03
CAPN1-220ENST00000530567 KRTAP6-3Q3LI67 103 aa8.58□□□□□ -1.04
CAPN1-220ENST00000530567 KRTAP10-7P60409 375 aaPredicted RBP8.56□□□□□ -1.04
CAPN1-220ENST00000530567 KMT2DO14686 5537 aa8.51□□□□□ -1.05
CAPN1-220ENST00000530567 KRTAP10-12P60413 245 aa8.51□□□□□ -1.05
CAPN1-220ENST00000530567 MIR22HGQ0VDD5 57 aa8.46□□□□□ -1.05
CAPN1-220ENST00000530567 KRTAP4-8A0A0G2JLE6 195 aa8.42□□□□□ -1.06
CAPN1-220ENST00000530567 KRTAP5-9P26371 169 aa8.42□□□□□ -1.06
CAPN1-220ENST00000530567 KRTAP4-8Q9BYQ9 185 aa8.42□□□□□ -1.06
CAPN1-220ENST00000530567 KRTAP8-1Q8IUC2 63 aa8.36□□□□□ -1.07
CAPN1-220ENST00000530567 A6NED7 52 aa8.3□□□□□ -1.08
CAPN1-220ENST00000530567 C10orf95Q9H7T3 257 aa8.29□□□□□ -1.08
CAPN1-220ENST00000530567 MUC12Q9UKN1 5478 aa8.26□□□□□ -1.09
CAPN1-220ENST00000530567 SPRR2FQ96RM1 72 aa8.24□□□□□ -1.09
CAPN1-220ENST00000530567 NEBP20929 6669 aa8.21□□□□□ -1.09
CAPN1-220ENST00000530567 K7ERS5 55 aa8.15□□□□□ -1.1
CAPN1-220ENST00000530567 MDN1Q9NU22 5596 aa8.13□□□□□ -1.11
CAPN1-220ENST00000530567 TNP1P09430 55 aa8.11□□□□□ -1.11
CAPN1-220ENST00000530567 CDC42SE1Q9NRR8 79 aa8.05□□□□□ -1.12
CAPN1-220ENST00000530567 KRTAP19-7Q3SYF9 63 aa8.02□□□□□ -1.13
CAPN1-220ENST00000530567 SPRR2EP22531 72 aa8.01□□□□□ -1.13
CAPN1-220ENST00000530567 SPRR2BP35325 72 aa8.01□□□□□ -1.13
CAPN1-220ENST00000530567 SPRR2AP35326 72 aa8.01□□□□□ -1.13
CAPN1-220ENST00000530567 LCE1AQ5T7P2 110 aa8□□□□□ -1.13
CAPN1-220ENST00000530567 LCE3AQ5TA76 89 aa7.96□□□□□ -1.13
CAPN1-220ENST00000530567 KRTAP19-5Q3LI72 72 aa7.92□□□□□ -1.14
CAPN1-220ENST00000530567 MT1EP04732 61 aa7.91□□□□□ -1.14
CAPN1-220ENST00000530567 KRTAP25-1Q3LHN0 102 aa7.9□□□□□ -1.14
CAPN1-220ENST00000530567 ROMO1P60602 79 aa7.75□□□□□ -1.17
CAPN1-220ENST00000530567 KRTAP19-3Q7Z4W3 81 aa7.73□□□□□ -1.17
CAPN1-220ENST00000530567 SPRR2DP22532 72 aa7.72□□□□□ -1.17
CAPN1-220ENST00000530567 KRTAP20-1Q3LI63 56 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms